Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Forward (+)

175021 .. 178247

Gene Structure 3227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000766.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atggcgtcggtgggccaggccgcggaggtgtacgagccgaagccactccaagtctggcgagctatgatgaactggttgggcttcttcttccagatcatcgttcagatcctcagaggcgccccttgcctcgctcatttcctgtcgtacgttcctcttctcgcttcttcttcttcttcttctttcaggcccttgccggtcagtgaaatccctctcaacgacacgtcgtcctccgctcaccccaacctcgaaaacggcgtcgtaaccgacgatcaccgccttcaaaagctcacggtagttcttgacttagatgagacgctagtgtgtgcgtacgaaacatctagcttgcctgctattgttcggacccaagcaacagatgctgggttgaagtggtttgagatagaatgtgtatcttcagacaaggagtctgatggtaaaccgaagatcagttatgtgacagtgtttgaacgtcctggtttgcacgagttcttgaaacggatctgtgaatttgctgatcttgtcctatttactgctggtcttgaaggttatgctaggccacttgttgacagaattgatttggagaacagatttaagcttcgtctttatcggccttctacagtgaccacggaaaaccgggatcatgtgaaagatctgtcttgtatatcgaaagatctctgtcgagttgttattgttgacaacaacccatttagttttctgctgcaaccggtgaatggagttccatgtattccgttttctgctggacatccatatgatgaccagctcttggaggtgctgcttccactcctccagcacctcgcccagcaaaaggatgtgaggcctgtgctttatgagagattccacatgccggaatggtttcaaatgcatggaattactatttctggtggcgacggcgcggcgggacttgccggacggaggccaggggtcgatcttgacattcttcttgctggtggactccccggctatcggtttgcagtcgctacccagaactttgaagtttcaggtgaggtcgctacccagaaccttcgaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

349

Amino Acids

38.81

Weight (kDa)

5.4

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	781
AccBSI	CCGCTC	1 cut(s)	233
AccII	CGCG	2 cut(s)	23, 911
AciI	CCGC	6 cut(s)	21, 23, 231, 274, 911, 914
AclWI	GGATC	3 cut(s)	100, 503, 642
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	3 cut(s)	5, 117, 255
AfaI	GTAC	3 cut(s)	32, 146, 329
AfiI	CCNNNNNNNGG	7 cut(s)	22, 728, 781, 823, 862, 930, 981
AflIII	ACRYGT	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	721
AgsI	TTSAA	7 cut(s)	281, 385, 464, 490, 539, 875, 1010
AhdI	GACNNNNNGTC	2 cut(s)	223, 421
AjiI	CACGTC	1 cut(s)	222
AjnI	CCWGG	3 cut(s)	15, 469, 934
AluBI	AGCT	5 cut(s)	62, 286, 342, 592, 778
AluI	AGCT	5 cut(s)	62, 286, 342, 592, 778
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	3 cut(s)	100, 503, 642
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	7 cut(s)	13, 18, 185, 551, 605, 833, 932
ApeKI	GCWGC	2 cut(s)	715, 790
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
AsiGI	ACCGGT	1 cut(s)	721
Asp700I	GAANNNNTTC	1 cut(s)	870
AspLEI	GCGC	2 cut(s)	119, 911
AspS9I	GGNCC	3 cut(s)	13, 186, 360
AsuC2I	CCSGG	2 cut(s)	632, 975
AsuHPI	GGTGA	4 cut(s)	227, 263, 736, 1031
AvaII	GGWCC	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	116
BauI	CACGAG	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	702, 777
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	2 cut(s)	268, 922
BciT130I	CCWGG	3 cut(s)	17, 471, 936
BcnI	CCSGG	2 cut(s)	632, 975
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	3 cut(s)	317, 339, 549
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	120
BglII	AGATCT	2 cut(s)	646, 667
BisI	GCNGC	4 cut(s)	21, 716, 791, 912
BlsI	GCNGC	4 cut(s)	22, 717, 792, 913
Bme1390I	CCNGG	5 cut(s)	17, 471, 632, 936, 975
Bme18I	GGWCC	1 cut(s)	360
BmeRI	GACNNNNNGTC	2 cut(s)	223, 421
BmgBI	CACGTC	1 cut(s)	222
BmgT120I	GGNCC	3 cut(s)	13, 186, 360
BmiI	GGNNCC	2 cut(s)	118, 362
BmrFI	CCNGG	5 cut(s)	17, 471, 632, 936, 975
BmsI	GCATC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	788
BpuMI	CCSGG	2 cut(s)	632, 975
BsaHI	GRCGYC	3 cut(s)	5, 117, 255
BsaJI	CCNNGG	4 cut(s)	21, 621, 935, 973
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	7 cut(s)	22, 728, 781, 823, 862, 930, 981
Bse118I	RCCGGY	2 cut(s)	193, 721
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	3 cut(s)	17, 471, 936
BseDI	CCNNGG	4 cut(s)	21, 621, 935, 973
BseGI	GGATG	2 cut(s)	760, 832
BseLI	CCNNNNNNNGG	7 cut(s)	22, 728, 781, 823, 862, 930, 981
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	791
BseXI	GCAGC	2 cut(s)	702, 777
BseYI	CCCAGC	2 cut(s)	377, 816
Bsh1236I	CGCG	2 cut(s)	23, 911
BshFI	GGCC	7 cut(s)	15, 20, 187, 553, 607, 835, 934
BshNI	GGYRCC	1 cut(s)	116
BshTI	ACCGGT	1 cut(s)	721
BsiSI	CCGG	6 cut(s)	194, 631, 722, 863, 924, 975
BsiWI	CGTACG	2 cut(s)	144, 327
BslFI	GGGAC	1 cut(s)	930
BslI	CCNNNNNNNGG	7 cut(s)	22, 728, 781, 823, 862, 930, 981
BsmAI	GTCTC	1 cut(s)	305
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	930
BsnI	GGCC	7 cut(s)	15, 20, 187, 553, 607, 835, 934
BspACI	CCGC	6 cut(s)	21, 23, 231, 274, 911, 914
BspANI	GGCC	7 cut(s)	15, 20, 187, 553, 607, 835, 934
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	23, 911
BspLI	GGNNCC	2 cut(s)	118, 362
BspPI	GGATC	3 cut(s)	100, 503, 642
BspT107I	GGYRCC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	233
BsrFI	RCCGGY	2 cut(s)	193, 721
BsrI	ACTGG	1 cut(s)	77
BssAI	RCCGGY	2 cut(s)	193, 721
BssECI	CCNNGG	4 cut(s)	21, 621, 935, 973
BssNI	GRCGYC	3 cut(s)	5, 117, 255
BssSI	CACGAG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	3 cut(s)	17, 471, 936
Bst4CI	ACNGT	3 cut(s)	292, 457, 616
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	3 cut(s)	5, 117, 255
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	60, 344, 348
BstDEI	CTNAG	2 cut(s)	110, 304
BstDSI	CCRYGG	2 cut(s)	21, 621
BstF5I	GGATG	2 cut(s)	760, 832
BstFNI	CGCG	2 cut(s)	23, 911
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	119, 911
BstMAI	GTCTC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 374, 920
BstNI	CCWGG	3 cut(s)	17, 471, 936
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	5 cut(s)	15, 469, 630, 934, 973
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	2 cut(s)	23, 911
BstV1I	GCAGC	2 cut(s)	702, 777
BstX2I	RGATCY	4 cut(s)	105, 495, 646, 667
BstYI	RGATCY	4 cut(s)	105, 495, 646, 667
BsuRI	GGCC	7 cut(s)	15, 20, 187, 553, 607, 835, 934
BtgI	CCRYGG	2 cut(s)	21, 621
BtrI	CACGTC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	760, 832
BtsIMutI	CAGTG	3 cut(s)	205, 462, 621
Cac8I	GCNNGC	3 cut(s)	60, 344, 348
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	2 cut(s)	119, 911
Cfr10I	RCCGGY	2 cut(s)	193, 721
Cfr13I	GGNCC	3 cut(s)	13, 186, 360
Cfr42I	CCGCGG	1 cut(s)	24
CseI	GACGC	2 cut(s)	244, 322
Csp6I	GTAC	3 cut(s)	31, 145, 328
CspAI	ACCGGT	1 cut(s)	721
CviAII	CATG	4 cut(s)	638, 738, 859, 881
CviQI	GTAC	3 cut(s)	31, 145, 328
DdeI	CTNAG	2 cut(s)	110, 304
DinI	GGCGCC	1 cut(s)	118
DriI	GACNNNNNGTC	2 cut(s)	223, 421
Eam1104I	CTCTTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	2 cut(s)	223, 421
EarI	CTCTTC	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	186
EcoRII	CCWGG	3 cut(s)	15, 469, 934
EcoT22I	ATGCAT	1 cut(s)	882
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	4 cut(s)	641, 741, 862, 884
FaqI	GGGAC	1 cut(s)	930
FatI	CATG	4 cut(s)	637, 737, 858, 880
FauI	CCCGC	1 cut(s)	907
FauNDI	CATATG	1 cut(s)	766
Fnu4HI	GCNGC	4 cut(s)	21, 716, 791, 912
FokI	GGATG	2 cut(s)	747, 839
Fsp4HI	GCNGC	4 cut(s)	21, 716, 791, 912
FspBI	CTAG	3 cut(s)	317, 339, 549
GlaI	GCGC	2 cut(s)	118, 910
GluI	GCNGC	4 cut(s)	21, 716, 791, 912
GsaI	CCCAGC	2 cut(s)	381, 820
GsuI	CTGGAG	1 cut(s)	788
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	7 cut(s)	15, 20, 187, 553, 607, 835, 934
HapII	CCGG	6 cut(s)	194, 631, 722, 863, 924, 975
HgaI	GACGC	2 cut(s)	244, 322
HhaI	GCGC	2 cut(s)	119, 911
Hin1I	GRCGYC	3 cut(s)	5, 117, 255
Hin1II	CATG	4 cut(s)	641, 741, 862, 884
Hin6I	GCGC	2 cut(s)	117, 909
HinP1I	GCGC	2 cut(s)	117, 909
HincII	GTYRAC	2 cut(s)	562, 691
HindII	GTYRAC	2 cut(s)	562, 691
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	3 cut(s)	422, 852, 969
HpaII	CCGG	6 cut(s)	194, 631, 722, 863, 924, 975
HphI	GGTGA	4 cut(s)	227, 263, 736, 1031
Hpy166II	GTNNAC	5 cut(s)	31, 434, 562, 691, 968
Hpy188I	TCNGA	5 cut(s)	105, 113, 360, 415, 427
Hpy188III	TCNNGA	5 cut(s)	91, 299, 487, 536, 947
Hpy8I	GTNNAC	5 cut(s)	31, 434, 562, 691, 968
Hpy99I	CGWCG	5 cut(s)	10, 226, 260, 269, 908
HpyAV	CCTTC	4 cut(s)	287, 533, 618, 1049
HpyCH4III	ACNGT	3 cut(s)	292, 457, 616
HpyCH4IV	ACGT	3 cut(s)	147, 221, 466
HpyCH4V	TGCA	4 cut(s)	478, 718, 880, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 374, 920
HpyF3I	CTNAG	2 cut(s)	110, 304
HpySE526I	ACGT	3 cut(s)	147, 221, 466
Hsp92I	GRCGYC	3 cut(s)	5, 117, 255
Hsp92II	CATG	4 cut(s)	641, 741, 862, 884
HspAI	GCGC	2 cut(s)	117, 909
KasI	GGCGCC	1 cut(s)	116
KspI	CCGCGG	1 cut(s)	24
Lsp1109I	GCAGC	2 cut(s)	702, 777
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	317, 339, 549
MaeII	ACGT	3 cut(s)	147, 221, 466
MaeIII	GTNAC	3 cut(s)	259, 451, 616
MbiI	CCGCTC	1 cut(s)	233
MflI	RGATCY	4 cut(s)	105, 495, 646, 667
MluCI	AATT	3 cut(s)	503, 567, 885
Mly113I	GGCGCC	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	431, 963
Mph1103I	ATGCAT	1 cut(s)	882
MroXI	GAANNNNTTC	1 cut(s)	870
MseI	TTAA	2 cut(s)	588, 1048
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	6 cut(s)	194, 631, 722, 863, 924, 975
MspR9I	CCNGG	5 cut(s)	17, 471, 632, 936, 975
MvaI	CCWGG	3 cut(s)	17, 471, 936
MvnI	CGCG	2 cut(s)	23, 911
MwoI	GCNNNNNNNGC	3 cut(s)	123, 374, 920
NarI	GGCGCC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	632, 975
NdeI	CATATG	1 cut(s)	766
NlaIII	CATG	4 cut(s)	641, 741, 862, 884
NlaIV	GGNNCC	2 cut(s)	118, 362
NmuCI	GTSAC	2 cut(s)	451, 616
NsiI	ATGCAT	1 cut(s)	882
NspI	RCATGY	1 cut(s)	862
PceI	AGGCCT	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 264
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	1 cut(s)	852
Pfl23II	CGTACG	2 cut(s)	144, 327
PflMI	CCANNNNNTGG	1 cut(s)	781
PinAI	ACCGGT	1 cut(s)	721
PkrI	GCNGC	4 cut(s)	22, 717, 792, 913
PleI	GAGTC	2 cut(s)	430, 963
PluTI	GGCGCC	1 cut(s)	120
PpsI	GAGTC	2 cut(s)	430, 963
Psp6I	CCWGG	3 cut(s)	15, 469, 934
PspFI	CCCAGC	2 cut(s)	377, 816
PspGI	CCWGG	3 cut(s)	15, 469, 934
PspLI	CGTACG	2 cut(s)	144, 327
PspN4I	GGNNCC	2 cut(s)	118, 362
PspPI	GGNCC	3 cut(s)	13, 186, 360
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	4 cut(s)	105, 495, 646, 667
RsaI	GTAC	3 cut(s)	32, 146, 329
RsaNI	GTAC	3 cut(s)	31, 145, 328
RseI	CAYNNNNRTG	1 cut(s)	765
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	588, 1048
SatI	GCNGC	4 cut(s)	21, 716, 791, 912
Sau96I	GGNCC	3 cut(s)	13, 186, 360
SchI	GAGTC	2 cut(s)	431, 963
ScrFI	CCNGG	5 cut(s)	17, 471, 632, 936, 975
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	612
SfoI	GGCGCC	1 cut(s)	118
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	765
Sse9I	AATT	3 cut(s)	503, 567, 885
SseBI	AGGCCT	1 cut(s)	835
SsiI	CCGC	6 cut(s)	21, 23, 231, 274, 911, 914
SspDI	GGCGCC	1 cut(s)	116
SspMI	CTAG	3 cut(s)	317, 339, 549
StuI	AGGCCT	1 cut(s)	835
StyD4I	CCNGG	5 cut(s)	15, 469, 630, 934, 973
TaaI	ACNGT	3 cut(s)	292, 457, 616
TaiI	ACGT	3 cut(s)	150, 224, 469
TaqI	TCGA	5 cut(s)	246, 662, 676, 942, 1042
TasI	AATT	3 cut(s)	503, 567, 885
TauI	GCSGC	2 cut(s)	23, 914
TfiI	GAWTC	1 cut(s)	852
Tru1I	TTAA	2 cut(s)	588, 1048
Tru9I	TTAA	2 cut(s)	588, 1048
TscAI	CASTG	3 cut(s)	205, 462, 621
TseFI	GTSAC	2 cut(s)	451, 616
TseI	GCWGC	2 cut(s)	715, 790
Tsp45I	GTSAC	2 cut(s)	451, 616
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	4 cut(s)	508, 638, 735, 943
TspRI	CASTG	3 cut(s)	205, 462, 621
Van91I	CCANNNNNTGG	1 cut(s)	781
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	3 cut(s)	317, 339, 549
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.