Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Reverse (-)

26530114 .. 26533305

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G250400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCCGAGTTGACTCAGGGTGAGGTGGTCTACTCGCCCAAGACTCTCCAAGTATGGCGAGCCTTGGTGAACTGGTTCGGCTTCTTCTTCCAGATCTTCCTCCAAATCCTCAGAGCCCTCGGTCACCACCCCCTCCTCTCTTCTTCGTCTTCGGCTTCGTCTTCTTCCGCCTCCTTCAAATCCCTGCCGGTCGTTGAGTTGCAGGAGCTCGAGCACGACTCTCCCGCCGCCTCCGCCGTTGAAATCGCCGACACCCCAGATGCCGACTCCGACGACCGCATCCACAAGCTCACGGTAGTTCTTGACCTGGATGAAACTCTAGTGTGTGCATATGAGTCGTCTAGCTTGCCCGCTGTCGTTCGAGATCAAGCTACAGAAGGTGGGTTGAAGTGGTTTGAGCTTGAATGCGTATCTTCAGACAAGGAATGTGATGGGAAACCAAAGGTCAATTATGTTACTGTCTTTGAGCGTCCCGGGTTGCAAGACTTCTTAAGACAAGTCAGTCAGTTTGCAGAGCTGGTGTTGTTTACTGCTGGTCTTGAAGGTTATGCTAGACCACTTGTTGACAGAATAGATGTTGATAATCTATTCAGTTGTCGACTTTATCGGCCTTCAACAACCAGCACGGAATACCGGGAGCATGTGAAGGATCTCTCTGGCCTAGCAAAGGATATGCGCCGAATTGTTATTGTTGACAACAACCCTTTCAGTTTCTTGTTGCAACCTTTGAATGGAATTCCATGCATTGCATTTTCTGCTGGGCAAACACACGACACACAGCTTTTGGATGTTCTTCTTCCACTCCTCAAGCACCTCTCCCTGCAGAAAGATGTAAGGCCAGTGCTTTATGAAAGGTTTCACATGCTTGAATGGTTTCAAAAGCAGGGGATTCCTTCAACAAGTTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

304

Amino Acids

34.11

Weight (kDa)

5.12

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	501
AccI	GTMKAC	2 cut(s)	30, 598
AciI	CCGC	6 cut(s)	168, 225, 228, 234, 277, 351
AclWI	GGATC	1 cut(s)	657
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	735
AcuI	CTGAAG	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	667, 731
AflII	CTTAAG	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	7 cut(s)	208, 289, 345, 371, 400, 517, 781
AluI	AGCT	7 cut(s)	208, 289, 345, 371, 400, 517, 781
Alw21I	GWGCWC	2 cut(s)	210, 216
AlwI	GGATC	1 cut(s)	657
Ama87I	CYCGRG	2 cut(s)	209, 473
AoxI	GGCC	4 cut(s)	3, 608, 658, 836
ApoI	RAATTY	1 cut(s)	735
Asp700I	GAANNNNTTC	3 cut(s)	74, 855, 873
AspLEI	GCGC	1 cut(s)	678
AsuC2I	CCSGG	3 cut(s)	474, 475, 635
AsuHPI	GGTGA	3 cut(s)	32, 79, 116
AvaI	CYCGRG	2 cut(s)	209, 473
BanII	GRGCYC	2 cut(s)	118, 210
BbsI	GAAGAC	2 cut(s)	141, 153
Bbv12I	GWGCWC	2 cut(s)	210, 216
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	3 cut(s)	474, 475, 635
BfaI	CTAG	4 cut(s)	320, 342, 552, 662
BfmI	CTRYAG	2 cut(s)	372, 821
BfrI	CTTAAG	1 cut(s)	490
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	4 cut(s)	308, 474, 475, 635
BmeT110I	CYCGRG	2 cut(s)	209, 473
BmrFI	CCNGG	4 cut(s)	308, 474, 475, 635
BmsI	GCATC	2 cut(s)	250, 288
BpiI	GAAGAC	2 cut(s)	141, 153
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	3 cut(s)	474, 475, 635
BsaJI	CCNNGG	3 cut(s)	63, 118, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 731
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	77, 839
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	63, 118, 473
BseGI	GGATG	3 cut(s)	279, 316, 793
BseLI	CCNNNNNNNGG	2 cut(s)	667, 731
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	2 cut(s)	29, 124
BseNI	ACTGG	2 cut(s)	77, 839
BseRI	GAGGAG	2 cut(s)	125, 794
BseYI	CCCAGC	1 cut(s)	758
Bsh1285I	CGRYCG	2 cut(s)	192, 277
BshFI	GGCC	4 cut(s)	5, 610, 660, 838
BsiEI	CGRYCG	2 cut(s)	192, 277
BsiHKAI	GWGCWC	2 cut(s)	210, 216
BsiHKCI	CYCGRG	2 cut(s)	209, 473
BsiSI	CCGG	3 cut(s)	188, 474, 634
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	667, 731
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	4 cut(s)	5, 610, 660, 838
BsoBI	CYCGRG	2 cut(s)	209, 473
Bsp1286I	GDGCHC	3 cut(s)	118, 210, 216
Bsp143I	GATC	3 cut(s)	93, 364, 649
BspACI	CCGC	6 cut(s)	168, 225, 228, 234, 277, 351
BspANI	GGCC	4 cut(s)	5, 610, 660, 838
BspCNI	CTCAG	2 cut(s)	28, 123
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	1 cut(s)	657
BspTI	CTTAAG	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	77, 839
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	63, 118, 473
BssMI	GATC	3 cut(s)	93, 364, 649
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	295, 460
Bst6I	CTCTTC	1 cut(s)	145
BstAFI	CTTAAG	1 cut(s)	490
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	3 cut(s)	60, 347, 351
BstDEI	CTNAG	2 cut(s)	15, 110
BstEII	GGTNACC	1 cut(s)	122
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	3 cut(s)	279, 316, 793
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	3 cut(s)	96, 367, 652
BstMBI	GATC	3 cut(s)	93, 364, 649
BstMCI	CGRYCG	2 cut(s)	192, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 755
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	644, 865
BstPI	GGTNACC	1 cut(s)	122
BstSCI	CCNGG	4 cut(s)	306, 472, 473, 633
BstSFI	CTRYAG	2 cut(s)	372, 821
BstV2I	GAAGAC	2 cut(s)	141, 153
BstX2I	RGATCY	2 cut(s)	93, 649
BstYI	RGATCY	2 cut(s)	93, 649
BsuRI	GGCC	4 cut(s)	5, 610, 660, 838
BtsCI	GGATG	3 cut(s)	279, 316, 793
BtsIMutI	CAGTG	1 cut(s)	846
Cac8I	GCNNGC	3 cut(s)	60, 347, 351
CfoI	GCGC	1 cut(s)	678
Cfr10I	RCCGGY	1 cut(s)	187
Cfr9I	CCCGGG	1 cut(s)	473
CseI	GACGC	1 cut(s)	458
CviAII	CATG	3 cut(s)	641, 741, 862
DdeI	CTNAG	2 cut(s)	15, 110
DpnI	GATC	3 cut(s)	95, 366, 651
DpnII	GATC	3 cut(s)	93, 364, 649
DrdI	GACNNNNNNGTC	1 cut(s)	501
DseDI	GACNNNNNNGTC	1 cut(s)	501
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EciI	GGCGGA	2 cut(s)	157, 223
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	118, 210
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	2 cut(s)	209, 473
Eco91I	GGTNACC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	746
EcoT38I	GRGCYC	2 cut(s)	118, 210
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	644, 744, 865
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	3 cut(s)	640, 740, 861
FauI	CCCGC	2 cut(s)	232, 358
FauNDI	CATATG	1 cut(s)	331
FblI	GTMKAC	2 cut(s)	30, 598
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	3 cut(s)	266, 323, 800
FriOI	GRGCYC	2 cut(s)	118, 210
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	4 cut(s)	320, 342, 552, 662
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	1 cut(s)	762
HaeIII	GGCC	4 cut(s)	5, 610, 660, 838
HapII	CCGG	3 cut(s)	188, 474, 634
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	678
Hin1II	CATG	3 cut(s)	644, 744, 865
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HincII	GTYRAC	4 cut(s)	12, 565, 599, 694
HindII	GTYRAC	4 cut(s)	12, 565, 599, 694
HinfI	GANTC	6 cut(s)	13, 43, 218, 266, 335, 889
HpaII	CCGG	3 cut(s)	188, 474, 634
HphI	GGTGA	3 cut(s)	32, 79, 116
Hpy166II	GTNNAC	7 cut(s)	12, 31, 70, 528, 565, 599, 694
Hpy188I	TCNGA	3 cut(s)	113, 271, 418
Hpy188III	TCNNGA	4 cut(s)	91, 302, 362, 539
Hpy8I	GTNNAC	7 cut(s)	12, 31, 70, 528, 565, 599, 694
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	6 cut(s)	184, 371, 536, 621, 640, 903
HpyCH4III	ACNGT	2 cut(s)	295, 460
HpyCH4V	TGCA	8 cut(s)	202, 329, 481, 512, 721, 744, 749, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 755
HpyF3I	CTNAG	2 cut(s)	15, 110
Hsp92II	CATG	3 cut(s)	644, 744, 865
HspAI	GCGC	1 cut(s)	676
Kzo9I	GATC	3 cut(s)	93, 364, 649
LmnI	GCTCC	2 cut(s)	205, 637
LweI	GCATC	2 cut(s)	250, 288
MaeI	CTAG	4 cut(s)	320, 342, 552, 662
MaeIII	GTNAC	2 cut(s)	122, 454
MalI	GATC	3 cut(s)	95, 366, 651
MboI	GATC	3 cut(s)	93, 364, 649
MflI	RGATCY	2 cut(s)	93, 649
MhlI	GDGCHC	3 cut(s)	118, 210, 216
MluCI	AATT	3 cut(s)	448, 681, 735
MlyI	GAGTC	5 cut(s)	7, 37, 212, 260, 344
MmeI	TCCRAC	2 cut(s)	294, 884
Mph1103I	ATGCAT	1 cut(s)	746
MroXI	GAANNNNTTC	3 cut(s)	74, 855, 873
MseI	TTAA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	490
MspI	CCGG	3 cut(s)	188, 474, 634
MspR9I	CCNGG	4 cut(s)	308, 474, 475, 635
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	233, 755
NciI	CCSGG	3 cut(s)	474, 475, 635
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	3 cut(s)	93, 364, 649
NlaIII	CATG	3 cut(s)	644, 744, 865
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	122
NsiI	ATGCAT	1 cut(s)	746
NspI	RCATGY	2 cut(s)	644, 865
PaeR7I	CTCGAG	1 cut(s)	209
PctI	GAATGC	1 cut(s)	410
PdmI	GAANNNNTTC	3 cut(s)	74, 855, 873
PfeI	GAWTC	1 cut(s)	889
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	5 cut(s)	7, 37, 212, 260, 343
PpsI	GAGTC	5 cut(s)	7, 37, 212, 260, 343
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	306
PspEI	GGTNACC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	306
PspXI	VCTCGAGB	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	2 cut(s)	93, 649
SacI	GAGCTC	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	597
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	93, 364, 649
SchI	GAGTC	5 cut(s)	7, 37, 212, 260, 344
ScrFI	CCNGG	4 cut(s)	308, 474, 475, 635
SduI	GDGCHC	3 cut(s)	118, 210, 216
SfaNI	GCATC	2 cut(s)	250, 288
SfcI	CTRYAG	2 cut(s)	372, 821
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmaI	CCCGGG	1 cut(s)	475
SmlI	CTYRAG	3 cut(s)	209, 490, 806
SmoI	CTYRAG	3 cut(s)	209, 490, 806
Sse9I	AATT	3 cut(s)	448, 681, 735
SsiI	CCGC	6 cut(s)	168, 225, 228, 234, 277, 351
SspMI	CTAG	4 cut(s)	320, 342, 552, 662
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	4 cut(s)	306, 472, 473, 633
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	295, 460
TaqI	TCGA	3 cut(s)	210, 361, 598
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	448, 681, 735
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	889
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	1 cut(s)	846
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	327, 864
TspGWI	ACGGA	1 cut(s)	641
TspMI	CCCGGG	1 cut(s)	473
TspRI	CASTG	1 cut(s)	846
Vha464I	CTTAAG	1 cut(s)	490
XagI	CCTNNNNNAGG	1 cut(s)	665
XapI	RAATTY	1 cut(s)	735
XceI	RCATGY	2 cut(s)	644, 865
XhoI	CTCGAG	1 cut(s)	209
XmaI	CCCGGG	1 cut(s)	473
XmiI	GTMKAC	2 cut(s)	30, 598
XmnI	GAANNNNTTC	3 cut(s)	74, 855, 873
XspI	CTAG	4 cut(s)	320, 342, 552, 662
Zsp2I	ATGCAT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.