Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Forward (+)

4558068 .. 4560005

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0061100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGGTGGAGCAAGTCCTTCACATGAATGGCGCAGATGGGAGAACAAGCTATGCAAACAACTCGCTTCTTCAAAGAGCAGTGATTTCATGGGCGAAGCCCATTGTAGATGCAAGCATAGAGAAGCTGTGTTGCGCCAACCTCCCTGCAGAGTGTTTGAGGATAGCTGACTTGGGATGTTCTTCAGGACCAAACACCCTTTTAGTCGTATCAAATGTCATAGACAAGATCCAGAATATGTGTCAAAATTTGAACCGTCGACCTCCATCGCTCCAAGTATTTTTGAATGATCTTCCCCAAAACGACTTTAACACAGTATTCAAATCATTGCCAGGCTTCTACAAAAAACTCGATGAAAGGAAGTGGCCGGAGCCATGCTTCATTGCAGGAATGCCCGGTTCTTTCTATGGCAGGCTCTTTCCTAAGAATTCTGTCAACTTTTTTCACTCTTCTTACTCTCTGCACTGGATCTCTAAGTTCGTCTTCAAGTTATTCCCAGCTTTGATCATATTGGTGGAATGCCTGCACGTTCCAAAAGGTTTGGTAACAGAAGGACTCAACGAGGGAAACATATGCATAGCCAAGACAAGCCCACCTTCTGTGTTTAATGAATACTTTGAACAATTTAAAAACGACTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTGGAATGGGTTTGATTGAAAAGAAAAACTTGGACTCCTTCAATATTCCATACTACGAACCTACAATGGAGGAACTGATGGAGCTGATCGAGGCCGAAGGATCCTTTAGGTTGCAGGACCTTCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCGATAAGAAAGCAAGGGCGGGTATATTCTCCACTCACATTAGGTCTGTGGTGGAGCCTTTTCTGGTCAGTCACTTTGGAGAGGGAGTCATGGAAGATTTGTTTCGCAGGTTCGAAAAAGATGTTCTTGATTACATGGAAAAGGAGAAGTGCCAGTCTATCGATATGGTTCTCTCCTTGACAAAGGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

349

Amino Acids

39.81

Weight (kDa)

5.41

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	39 - 232	1.4e-71	SAM dependent carboxyl methyltransferase
Methyltransf_7	PF03492	230 - 347	1.9e-28	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
Acc36I	ACCTGC	1 cut(s)	954
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	1 cut(s)	875
AclWI	GGATC	4 cut(s)	223, 476, 777, 790
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	247, 427
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	683
AgsI	TTSAA	9 cut(s)	74, 253, 286, 322, 487, 620, 701, 724, 806
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	6 cut(s)	51, 127, 167, 500, 766, 845
AluI	AGCT	6 cut(s)	51, 127, 167, 500, 766, 845
Alw26I	GTCTC	2 cut(s)	660, 860
AlwI	GGATC	4 cut(s)	223, 476, 777, 790
AoxI	GGCC	2 cut(s)	365, 774
ApoI	RAATTY	2 cut(s)	247, 427
AspLEI	GCGC	2 cut(s)	35, 137
AspS9I	GGNCC	3 cut(s)	188, 673, 799
AsuC2I	CCSGG	1 cut(s)	396
AsuII	TTCGAA	1 cut(s)	969
AvaII	GGWCC	3 cut(s)	188, 673, 799
AxyI	CCTNAGG	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	782
BauI	CACGAG	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	475
BccI	CCATC	3 cut(s)	32, 274, 754
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	660, 860
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	954
Bme1390I	CCNGG	2 cut(s)	333, 396
Bme18I	GGWCC	3 cut(s)	188, 673, 799
BmgT120I	GGNCC	3 cut(s)	188, 673, 799
BmiI	GGNNCC	4 cut(s)	372, 675, 784, 912
BmrFI	CCNGG	2 cut(s)	333, 396
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	475
Bpu14I	TTCGAA	1 cut(s)	969
BpuMI	CCSGG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	1017
BsaI	GGTCTC	2 cut(s)	660, 860
BsaXI	ACNNNNNCTCC	4 cut(s)	701, 731, 927, 957
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse1I	ACTGG	2 cut(s)	470, 1009
Bse21I	CCTNAGG	1 cut(s)	678
Bse3DI	GCAATG	2 cut(s)	326, 381
BseBI	CCWGG	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	1017
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMI	GCAATG	2 cut(s)	326, 381
BseMII	CTCAG	1 cut(s)	692
BseNI	ACTGG	2 cut(s)	470, 1009
BseYI	CCCAGC	1 cut(s)	496
BsgI	GTGCAG	3 cut(s)	446, 509, 681
BshFI	GGCC	2 cut(s)	367, 776
BshVI	ATCGAT	1 cut(s)	1017
BsiSI	CCGG	2 cut(s)	368, 396
BslFI	GGGAC	2 cut(s)	659, 839
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	2 cut(s)	660, 860
BsmFI	GGGAC	2 cut(s)	659, 839
BsmI	GAATGC	2 cut(s)	396, 524
BsnI	GGCC	2 cut(s)	367, 776
Bso31I	GGTCTC	2 cut(s)	660, 860
Bsp119I	TTCGAA	1 cut(s)	969
Bsp143I	GATC	6 cut(s)	228, 289, 468, 504, 768, 782
BspACI	CCGC	1 cut(s)	875
BspANI	GGCC	2 cut(s)	367, 776
BspCNI	CTCAG	1 cut(s)	691
BspDI	ATCGAT	1 cut(s)	1017
BspLI	GGNNCC	4 cut(s)	372, 675, 784, 912
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	954
BspPI	GGATC	4 cut(s)	223, 476, 777, 790
BspT104I	TTCGAA	1 cut(s)	969
BspTNI	GGTCTC	2 cut(s)	660, 860
BsrDI	GCAATG	2 cut(s)	326, 381
BsrI	ACTGG	2 cut(s)	470, 1009
BssMI	GATC	6 cut(s)	228, 289, 468, 504, 768, 782
BssSI	CACGAG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	257, 316, 643
Bst6I	CTCTTC	2 cut(s)	454, 660
BstBI	TTCGAA	1 cut(s)	969
BstC8I	GCNNGC	3 cut(s)	115, 413, 524
BstDEI	CTNAG	4 cut(s)	423, 474, 650, 678
BstF5I	GGATG	1 cut(s)	182
BstHHI	GCGC	2 cut(s)	35, 137
BstKTI	GATC	6 cut(s)	231, 292, 471, 507, 771, 785
BstMAI	GTCTC	2 cut(s)	660, 860
BstMBI	GATC	6 cut(s)	228, 289, 468, 504, 768, 782
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	331, 394
BstSFI	CTRYAG	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	475
BstX2I	RGATCY	3 cut(s)	228, 468, 782
BstYI	RGATCY	3 cut(s)	228, 468, 782
Bsu15I	ATCGAT	1 cut(s)	1017
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	2 cut(s)	367, 776
BsuTUI	ATCGAT	1 cut(s)	1017
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	3 cut(s)	87, 463, 648
BveI	ACCTGC	1 cut(s)	954
Cac8I	GCNNGC	3 cut(s)	115, 413, 524
CfoI	GCGC	2 cut(s)	35, 137
Cfr13I	GGNCC	3 cut(s)	188, 673, 799
ClaI	ATCGAT	1 cut(s)	1017
CviAII	CATG	6 cut(s)	25, 90, 375, 818, 946, 991
DdeI	CTNAG	4 cut(s)	423, 474, 650, 678
DpnI	GATC	6 cut(s)	230, 291, 470, 506, 770, 784
DpnII	GATC	6 cut(s)	228, 289, 468, 504, 768, 782
DraI	TTTAAA	2 cut(s)	628, 814
EaeI	YGGCCR	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	454, 660
EarI	CTCTTC	2 cut(s)	454, 660
Eco31I	GGTCTC	2 cut(s)	660, 860
Eco47I	GGWCC	3 cut(s)	188, 673, 799
Eco57I	CTGAAG	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	799
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	578
FaeI	CATG	6 cut(s)	28, 93, 378, 821, 949, 994
FalI	AAGNNNNNCTT	8 cut(s)	467, 499, 580, 612, 695, 727, 966, 998
FaqI	GGGAC	2 cut(s)	659, 839
FatI	CATG	6 cut(s)	24, 89, 374, 817, 945, 990
FauI	CCCGC	1 cut(s)	868
FauNDI	CATATG	1 cut(s)	572
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	259
FokI	GGATG	1 cut(s)	189
GlaI	GCGC	2 cut(s)	34, 136
GsaI	CCCAGC	1 cut(s)	500
HaeIII	GGCC	2 cut(s)	367, 776
HapII	CCGG	2 cut(s)	368, 396
HhaI	GCGC	2 cut(s)	35, 137
Hin1II	CATG	6 cut(s)	28, 93, 378, 821, 949, 994
Hin6I	GCGC	2 cut(s)	33, 135
HinP1I	GCGC	2 cut(s)	33, 135
HincII	GTYRAC	2 cut(s)	260, 436
HindII	GTYRAC	2 cut(s)	260, 436
HinfI	GANTC	4 cut(s)	555, 716, 827, 942
HpaII	CCGG	2 cut(s)	368, 396
Hpy166II	GTNNAC	2 cut(s)	260, 436
Hpy188III	TCNNGA	4 cut(s)	186, 232, 857, 983
Hpy8I	GTNNAC	2 cut(s)	260, 436
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	6 cut(s)	29, 545, 606, 730, 773, 812
HpyCH4III	ACNGT	3 cut(s)	257, 316, 643
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	9 cut(s)	56, 113, 149, 386, 463, 526, 576, 662, 796
HpyF3I	CTNAG	4 cut(s)	423, 474, 650, 678
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	6 cut(s)	28, 93, 378, 821, 949, 994
HspAI	GCGC	2 cut(s)	33, 135
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	6 cut(s)	228, 289, 468, 504, 768, 782
LmnI	GCTCC	5 cut(s)	10, 276, 370, 763, 910
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	544, 926
MalI	GATC	6 cut(s)	230, 291, 470, 506, 770, 784
MboI	GATC	6 cut(s)	228, 289, 468, 504, 768, 782
MboII	GAAGA	7 cut(s)	62, 174, 284, 441, 475, 677, 962
MflI	RGATCY	3 cut(s)	228, 468, 782
MluCI	AATT	3 cut(s)	247, 427, 623
MlyI	GAGTC	4 cut(s)	549, 710, 821, 951
MnlI	CCTC	8 cut(s)	152, 153, 273, 556, 687, 745, 766, 931
Mph1103I	ATGCAT	1 cut(s)	578
MseI	TTAA	4 cut(s)	309, 606, 627, 813
MslI	CAYNNNNRTG	2 cut(s)	27, 512
MspI	CCGG	2 cut(s)	368, 396
MspR9I	CCNGG	2 cut(s)	333, 396
Mva1269I	GAATGC	2 cut(s)	396, 524
MvaI	CCWGG	1 cut(s)	333
NciI	CCSGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	572
NdeII	GATC	6 cut(s)	228, 289, 468, 504, 768, 782
NlaIII	CATG	6 cut(s)	28, 93, 378, 821, 949, 994
NlaIV	GGNNCC	4 cut(s)	372, 675, 784, 912
NmuCI	GTSAC	1 cut(s)	926
NsiI	ATGCAT	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	969
PctI	GAATGC	2 cut(s)	396, 524
PleI	GAGTC	4 cut(s)	549, 710, 821, 950
PpsI	GAGTC	4 cut(s)	549, 710, 821, 950
PpuMI	RGGWCCY	1 cut(s)	799
PsiI	TTATAA	1 cut(s)	836
Psp5II	RGGWCCY	1 cut(s)	799
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	4 cut(s)	372, 675, 784, 912
PspPI	GGNCC	3 cut(s)	188, 673, 799
PspPPI	RGGWCCY	1 cut(s)	799
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	3 cut(s)	228, 468, 782
RseI	CAYNNNNRTG	2 cut(s)	27, 512
SalI	GTCGAC	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	309, 606, 627, 813
Sau3AI	GATC	6 cut(s)	228, 289, 468, 504, 768, 782
Sau96I	GGNCC	3 cut(s)	188, 673, 799
SchI	GAGTC	4 cut(s)	549, 710, 821, 951
ScrFI	CCNGG	2 cut(s)	333, 396
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	969
SinI	GGWCC	3 cut(s)	188, 673, 799
SmiMI	CAYNNNNRTG	2 cut(s)	27, 512
Sse9I	AATT	3 cut(s)	247, 427, 623
SsiI	CCGC	1 cut(s)	875
SspI	AATATT	1 cut(s)	727
StyD4I	CCNGG	2 cut(s)	331, 394
TaaI	ACNGT	3 cut(s)	257, 316, 643
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	6 cut(s)	259, 351, 771, 858, 969, 1017
TasI	AATT	3 cut(s)	247, 427, 623
Tru1I	TTAA	4 cut(s)	309, 606, 627, 813
Tru9I	TTAA	4 cut(s)	309, 606, 627, 813
TscAI	CASTG	3 cut(s)	87, 470, 648
TseFI	GTSAC	1 cut(s)	926
Tsp45I	GTSAC	1 cut(s)	926
TspDTI	ATGAA	5 cut(s)	41, 78, 369, 370, 624
TspRI	CASTG	3 cut(s)	87, 470, 648
VpaK11BI	GGWCC	3 cut(s)	188, 673, 799
XapI	RAATTY	2 cut(s)	247, 427
XmiI	GTMKAC	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.