Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004154

Physical Location & Seq

Genomic Coordinates Reverse (-)

408545 .. 418187

Gene Structure 9643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1006500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3012 bp

ATGATGCATGCAAGGAGACTAAAGTTTAGAAATCAGAGATGGGTGCTTCAAATGTCCAAATATTCAACAACGCCTACCTACACTGTTCATGGTTCTTCTCAATCTTTGGGTCATAAAACAATTTCGGGAAACCACTGTTTTCATGGTAGTTTTATTAGAAGCCGTCTCGTAGATTCATTCTTGTTGCGTAATGTTGCTCCTGGTTATAGCTGTACTGGTTTGCATGTAAGGTCTAATCCATGTTTGAAGGGTAGCCAGTTACGTGCCTACAGTTCTGAAGGTGACGGAAGGAATGCAAGTGAGGATAATCAAACACCAGTGAAAGGTGATGCGGACCTTGATAAAGGGAAGTCTTCTCAAGAAAAAGCAAAGGAAGATGGGAGGAGTTTCGATGCACATGCTCTGCTTGGGGAACAAGATCAAAAGGAATGGCTTACTAGTCAAAAGATTACCATTGAGAGTAAAAAGAAAGAGTCGCCTTTCTCAACTAAACGAGAGAAGTTCAAAAATGAGTTTTTGAGGAGGATTGTTCCGTGGGAGAAAATAACTGTGTCATGGGATACGTTTCCTTACTACATTCATGAACCTACCAAAAACCTTTTGGTGGAATGTGCTGCTTCCCATTTGAAACATAAAAAGTTTACTTCCACGTATGGTTCTCGTTTGACATCTTCAAATGGAAGAATTCTGCTTCAGAGTGCTCCAGGCACTGAACTTTATCGTGAAAGATTAGTTAGAGCACTTGCACAAGATCTCAAAGTTCCCCTCTTGGTGCTAGACAGCAGTGTACTTGCTCCTTATGATTTTGGTGACGATTGCGAATCTGAATCGGATGATGATGATATGGAGGAGAGTACTTCTGATTCAGAGATTGAGGATGAGAATGTTGCGAGTAACGAAGAAGATTGGACTAGTAGTAACGAGGCAAAATCAGATTCTAGTGATAAAGATGAAAGTGATGCACACACAAGGGCTGAAGCAGCCCTCAAGAAGCTTGTTCCTGTTGAAGAATTTGCAAAGATGGTATCTGGGGAAACTGAGAGTTCGTCTGAATCCTCAAAATCAGAAACTGCCGAGTCTTCTGAGCAATGCAAACGACTGCTAAAGAAAGGAGATCGAGTGAAGTACATCGGGCCTTCTATACGTGTTGAAGCTGATAACAGGCCTTTACCAAAGGGTCAACGAGGGGAGGTATATGAGGTGAGTGGAGATCGAGTTGCTGTTCTTTTGGATATTAAACAGAAGACAGGAACTGAAGTGGATGAAGAGGAGAAAGTAGCAGGGCAGCCTGCGGATCCACCAGTTTATTGGATACTTGCTAAGGAAATTGAGCATATTCCTGACCCACGGACTGAGGATTGTTATATTGCAATGGAGGCTCTATGTGAGGTATTGCATGCCAAGCAACCTCTTATTGTCTATTTTCCAGACTCTTCTCAATGGATGTCTAGGGCAGTTCCCAAGTCAGATCGCAAGGAGTTTGTCGCTAAGGTGAAAGAAGTTTTTGACGAGTTGTCAGGTCCTGTTGTTTTGATTTGCGGGCAGAACAAAGTTGAATCCGGGTCAAAGGGGAAAGAGAAATTTACAATGATACTTCCAAATTTTGGGCGTCTTGCAAAGCTGCCTCTCTCTCTTAAGCGTCTTACAGAGGGACTTAAAGGAACAAAGAAATCAGATGACAATGAAATATATAAGCTATTCACAAATGTTTTCTGCGTTTATCCGCCAAAGGAGGAAGAGGATCTTCGAACATTCAATAAACAGGTTGAAGAAGACAGAAGAATCGTGATAGCAAGGAGCAATTTAAATGAATTACATGAGGTTCTTGAGGAAAATGAGCTCTCATGCAATGACTTATTGCTAGTAGATACTGATGGTGTAATCTTGACAAAGCGAAAGGCTGAGAAAGTAGTTGGCTGGGCAAAGAACCATTACTTGTCATCATGCCTTCTTCCTTCTGTTAAAGGTGAAAGATTGCATCTGCCTCGTGAAAGCCTTGAAATAGCAATTTCACGTTTGAAGGAGCAAGAAAGTTTGTCTCGGAAGCCCTCTCAAAATTTGAAGAACCTAGCAAAGGATGAATATGAGAGCAACTTTGTTTCAGCAGTAGTACCTCCTGGTGAAATTGGTGTTAGGTTTGATGATGTTGGTGCTCTGGAGGACGTGAAGAGGGCGCTGAATGAACTTGTCATTCTTCCAATGAGGAGACCGGAGCTTTTCTCTCATGGAAACTTGTTGCGGCCTTGCAAAGGAATATTACTTTTTGGGCCTCCTGGAACTGGGAAGACCCTTCTTGCCAAGGCACTCGCAACAGAAGCTGGGACGAACTTTATCAGCATAACTGGTTCTACTCTAACATCAAAGTGGTTTGGAGATGCTGAAAAGCTGACCAAGGCTCTCTTCTCCTTTGCCAGCAAGCTTGCTCCTGTCATAATATTTGTTGATGAGGTTGATAGTTTGCTTGGTGCTCGTGGTGGGTCTTTTGAGCATGAGGCAACTAGAAGAATGAGAAATGAGTTCATGGCAGCTTGGGACGGATTGAGGTCCAAAGACAGTCAAAGAATCCTTATTCTTGGCGCCACAAATCGACCATTTGACCTTGATGATGCTGTCATTCGTCGGTTACCAAGAAGGATACATGTTGATTTACCTGATGTTGAAAATCGTAAGAAGATATTGAGTATATTTCTTGCTCAAGAGAATCTAGCACCTGGTTTCCAATTTGACAAACTTTCAGAAGCAACCGAGGGATACTCTGGCAGTGATTTGAAGAACCTCTGCATTGCTGCTGCTTATAGACCTGTCCAGGAGCTTTTAGAAGAAGAAAAGAAGGACATAAAAAGTGATGCATCTACGGTGTTAAGGCCACTGACTCTAGATGATCTTATTCAATCAAAAGCCAAGGTTGGGCCGTCAGTTTCCTACGATGCTTCAAGCATGAACGAACTTAGGAAATGGAACGAACAATATGGAGAAGGCGGAAGCAGAAGAAAATCACCATTTGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

1004

Amino Acids

112.46

Weight (kDa)

6.02

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	614 - 671	4.9e-06	Domain of unknown function (DUF7751)
AAA	PF00004	752 - 882	2.2e-36	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	906 - 946	1.2e-10	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT3G19740
fragaria_vesca	FvH4_4g36860 FvH4_4g36860 FvH4_4g36860
malus_domestica	MD13G1006500.v1.1 MD16G1001500.v1.1
prunus_persica	Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1
pyrus_communis	pycom13g00540 pycom16g00410
rosa_chinensis	RchiOBHm_Chr4g0446611
rosa_laevigata	RLG00000005645
rosa_multiflora	Rmu_sc0036387.1_g000001 Rmu_ssc0000144.1_g000003
rosa_roxburghii	Rroxscaffold_5G00387010
rosa_rugosa	Rorug04G0372800 Rorug04G0372900 Rorug04G0373000 Rorug04G0373100
rosa_samantha	Rh4AG434400 Rh4BG443600 Rh4CG460900 Rh4DG442400
rosa_wichuraiana	Rw4G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2576
AccB7I	CCANNNNNTGG	1 cut(s)	1604
AciI	CCGC	6 cut(s)	332, 1292, 1539, 1724, 2239, 2979
AclWI	GGATC	3 cut(s)	1289, 1302, 1749
AcsI	RAATTY	5 cut(s)	684, 1010, 1580, 1600, 2056
AcuI	CTGAAG	4 cut(s)	297, 677, 996, 1275
AcyI	GRCGYC	2 cut(s)	1609, 2577
AfaI	GTAC	5 cut(s)	214, 789, 856, 1127, 2112
AfiI	CCNNNNNNNGG	7 cut(s)	323, 604, 1604, 2074, 2249, 2279, 2907
AflII	CTTAAG	1 cut(s)	1634
AflIII	ACRYGT	2 cut(s)	1144, 2638
AhdI	GACNNNNNGTC	1 cut(s)	1513
AhlI	ACTAGT	2 cut(s)	437, 911
AjiI	CACGTC	1 cut(s)	2164
AjnI	CCWGG	6 cut(s)	199, 703, 2116, 2272, 2710, 2805
AjuI	GAANNNNNNNTTGG	2 cut(s)	2384, 2416
Alw21I	GWGCWC	5 cut(s)	703, 742, 1842, 2155, 2470
Alw26I	GTCTC	4 cut(s)	10, 170, 2043, 2200
AlwI	GGATC	3 cut(s)	1289, 1302, 1749
AlwNI	CAGNNNCTG	5 cut(s)	710, 1070, 1253, 1523, 2318
AoxI	GGCC	6 cut(s)	1133, 1163, 2240, 2267, 2864, 2909
ApeKI	GCWGC	7 cut(s)	614, 980, 1285, 1621, 2525, 2786, 2789
ApoI	RAATTY	5 cut(s)	684, 1010, 1580, 1600, 2056
AspLEI	GCGC	2 cut(s)	2176, 2579
AspS9I	GGNCC	6 cut(s)	334, 1133, 1520, 2267, 2544, 2909
AsuC2I	CCSGG	1 cut(s)	1561
AsuHPI	GGTGA	8 cut(s)	293, 338, 821, 1213, 1504, 1979, 2132, 2988
AsuII	TTCGAA	1 cut(s)	1747
AvaII	GGWCC	3 cut(s)	334, 1520, 2544
BamHI	GGATCC	1 cut(s)	1294
BanI	GGYRCC	1 cut(s)	2576
BanII	GRGCYC	1 cut(s)	1842
BauI	CACGAG	2 cut(s)	1986, 2469
BbsI	GAAGAC	5 cut(s)	345, 1071, 1250, 1779, 2291
Bbv12I	GWGCWC	5 cut(s)	703, 742, 1842, 2155, 2470
BbvI	GCAGC	7 cut(s)	601, 992, 1297, 1608, 2537, 2773, 2776
BccI	CCATC	4 cut(s)	33, 371, 1015, 1868
BceAI	ACGGC	2 cut(s)	147, 2896
BcgI	CGANNNNNNTGC	4 cut(s)	380, 414, 1967, 2001
BciT130I	CCWGG	6 cut(s)	201, 705, 2118, 2274, 2712, 2807
BciVI	GTATCC	4 cut(s)	553, 1305, 2628, 2744
BcnI	CCSGG	1 cut(s)	1561
BcoDI	GTCTC	4 cut(s)	10, 170, 2043, 2200
BcuI	ACTAGT	2 cut(s)	437, 911
BfmI	CTRYAG	1 cut(s)	268
BfoI	RGCGCY	2 cut(s)	2177, 2580
BfrI	CTTAAG	1 cut(s)	1634
BfuI	GTATCC	4 cut(s)	553, 1305, 2628, 2744
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	8 cut(s)	615, 981, 1286, 1622, 2240, 2526, 2787, 2790
BlsI	GCNGC	8 cut(s)	616, 982, 1287, 1623, 2241, 2527, 2788, 2791
BmcAI	AGTACT	1 cut(s)	856
Bme1390I	CCNGG	7 cut(s)	201, 705, 1561, 2118, 2274, 2712, 2807
Bme18I	GGWCC	3 cut(s)	334, 1520, 2544
BmeRI	GACNNNNNGTC	1 cut(s)	1513
BmgBI	CACGTC	1 cut(s)	2164
BmgT120I	GGNCC	6 cut(s)	334, 1133, 1520, 2267, 2544, 2909
BmiI	GGNNCC	2 cut(s)	1296, 2578
BmrFI	CCNGG	7 cut(s)	201, 705, 1561, 2118, 2274, 2712, 2807
BmrI	ACTGGG	1 cut(s)	2289
BmsI	GCATC	9 cut(s)	319, 382, 949, 1987, 2365, 2596, 2836, 2858, 2917
BmuI	ACTGGG	1 cut(s)	2289
BpiI	GAAGAC	5 cut(s)	345, 1071, 1250, 1779, 2291
BplI	GAGNNNNNCTC	4 cut(s)	2204, 2236, 2738, 2770
BpmI	CTGGAG	2 cut(s)	687, 2177
Bpu10I	CCTNAGC	2 cut(s)	1320, 1488
Bpu14I	TTCGAA	1 cut(s)	1747
BpuEI	CTTGAG	4 cut(s)	342, 971, 1847, 2679
BpuMI	CCSGG	1 cut(s)	1561
BsaAI	YACGTR	3 cut(s)	263, 651, 1145
BsaHI	GRCGYC	2 cut(s)	1609, 2577
BsaI	GGTCTC	1 cut(s)	2200
BsaJI	CCNNGG	6 cut(s)	533, 1346, 2298, 2391, 2745, 2901
BsaWI	WCCGGW	1 cut(s)	2209
BsaXI	ACNNNNNCTCC	4 cut(s)	1104, 1134, 1200, 1230
Bsc4I	CCNNNNNNNGG	7 cut(s)	323, 604, 1604, 2074, 2249, 2279, 2907
Bse1I	ACTGG	6 cut(s)	220, 256, 317, 1301, 2284, 2347
Bse3DI	GCAATG	4 cut(s)	1094, 1377, 1855, 2781
BseBI	CCWGG	6 cut(s)	201, 705, 2118, 2274, 2712, 2807
BseDI	CCNNGG	6 cut(s)	533, 1346, 2298, 2391, 2745, 2901
BseGI	GGATG	5 cut(s)	838, 883, 1267, 1449, 2083
BseLI	CCNNNNNNNGG	7 cut(s)	323, 604, 1604, 2074, 2249, 2279, 2907
BseMI	GCAATG	4 cut(s)	1094, 1377, 1855, 2781
BseMII	CTCAG	4 cut(s)	1029, 1074, 1344, 1893
BseNI	ACTGG	6 cut(s)	220, 256, 317, 1301, 2284, 2347
BseRI	GAGGAG	5 cut(s)	397, 535, 863, 1283, 2218
BseXI	GCAGC	7 cut(s)	601, 992, 1297, 1608, 2537, 2773, 2776
BseYI	CCCAGC	2 cut(s)	1917, 2318
BshFI	GGCC	6 cut(s)	1135, 1165, 2242, 2269, 2866, 2911
BshNI	GGYRCC	1 cut(s)	2576
BsiHKAI	GWGCWC	5 cut(s)	703, 742, 1842, 2155, 2470
BsiSI	CCGG	2 cut(s)	1560, 2210
BslFI	GGGAC	3 cut(s)	1665, 2335, 2546
BslI	CCNNNNNNNGG	7 cut(s)	323, 604, 1604, 2074, 2249, 2279, 2907
BsmAI	GTCTC	4 cut(s)	10, 170, 2043, 2200
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	3 cut(s)	1665, 2335, 2546
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	6 cut(s)	1135, 1165, 2242, 2269, 2866, 2911
Bso31I	GGTCTC	1 cut(s)	2200
Bsp119I	TTCGAA	1 cut(s)	1747
Bsp1286I	GDGCHC	5 cut(s)	703, 742, 1842, 2155, 2470
Bsp143I	GATC	8 cut(s)	418, 751, 1114, 1210, 1294, 1468, 1741, 2881
BspACI	CCGC	6 cut(s)	332, 1292, 1539, 1724, 2239, 2979
BspANI	GGCC	6 cut(s)	1135, 1165, 2242, 2269, 2866, 2911
BspCNI	CTCAG	4 cut(s)	1030, 1075, 1345, 1894
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	1296, 2578
BspPI	GGATC	3 cut(s)	1289, 1302, 1749
BspT104I	TTCGAA	1 cut(s)	1747
BspT107I	GGYRCC	1 cut(s)	2576
BspTI	CTTAAG	1 cut(s)	1634
BspTNI	GGTCTC	1 cut(s)	2200
BsrDI	GCAATG	4 cut(s)	1094, 1377, 1855, 2781
BsrI	ACTGG	6 cut(s)	220, 256, 317, 1301, 2284, 2347
BssECI	CCNNGG	6 cut(s)	533, 1346, 2298, 2391, 2745, 2901
BssMI	GATC	8 cut(s)	418, 751, 1114, 1210, 1294, 1468, 1741, 2881
BssNI	GRCGYC	2 cut(s)	1609, 2577
BssSI	CACGAG	2 cut(s)	1986, 2469
BssT1I	CCWWGG	3 cut(s)	2298, 2391, 2901
Bst2BI	CACGAG	2 cut(s)	1986, 2469
Bst2UI	CCWGG	6 cut(s)	201, 705, 2118, 2274, 2712, 2807
Bst4CI	ACNGT	6 cut(s)	85, 137, 272, 550, 2555, 2857
Bst6I	CTCTTC	5 cut(s)	1260, 1438, 1731, 2162, 2405
BstACI	GRCGYC	2 cut(s)	1609, 2577
BstAFI	CTTAAG	1 cut(s)	1634
BstBAI	YACGTR	3 cut(s)	263, 651, 1145
BstBI	TTCGAA	1 cut(s)	1747
BstC8I	GCNNGC	7 cut(s)	9, 1290, 1398, 1541, 2413, 2417, 2421
BstDEI	CTNAG	7 cut(s)	1038, 1083, 1320, 1353, 1488, 1902, 2948
BstDSI	CCRYGG	2 cut(s)	533, 1346
BstEII	GGTNACC	1 cut(s)	2622
BstENI	CCTNNNNNAGG	2 cut(s)	2072, 2247
BstF5I	GGATG	5 cut(s)	838, 883, 1267, 1449, 2083
BstH2I	RGCGCY	2 cut(s)	2177, 2580
BstHHI	GCGC	2 cut(s)	2176, 2579
BstKTI	GATC	8 cut(s)	421, 754, 1117, 1213, 1297, 1471, 1744, 2884
BstMAI	GTCTC	4 cut(s)	10, 170, 2043, 2200
BstMBI	GATC	8 cut(s)	418, 751, 1114, 1210, 1294, 1468, 1741, 2881
BstMWI	GCNNNNNNNGC	4 cut(s)	980, 1376, 1402, 2315
BstNI	CCWGG	6 cut(s)	201, 705, 2118, 2274, 2712, 2807
BstNSI	RCATGY	5 cut(s)	11, 227, 401, 1400, 2642
BstPI	GGTNACC	1 cut(s)	2622
BstSCI	CCNGG	7 cut(s)	199, 703, 1559, 2116, 2272, 2710, 2805
BstSFI	CTRYAG	1 cut(s)	268
BstV1I	GCAGC	7 cut(s)	601, 992, 1297, 1608, 2537, 2773, 2776
BstV2I	GAAGAC	5 cut(s)	345, 1071, 1250, 1779, 2291
BstX2I	RGATCY	3 cut(s)	751, 1294, 1741
BstXI	CCANNNNNNTGG	1 cut(s)	1308
BstYI	RGATCY	3 cut(s)	751, 1294, 1741
BsuI	GTATCC	4 cut(s)	553, 1305, 2628, 2744
BsuRI	GGCC	6 cut(s)	1135, 1165, 2242, 2269, 2866, 2911
BtgI	CCRYGG	2 cut(s)	533, 1346
BtrI	CACGTC	1 cut(s)	2164
BtsCI	GGATG	5 cut(s)	838, 883, 1267, 1449, 2083
BtsI	GCAGTG	2 cut(s)	790, 2767
BtsIMutI	CAGTG	7 cut(s)	81, 133, 324, 708, 790, 2767, 2867
Cac8I	GCNNGC	7 cut(s)	9, 1290, 1398, 1541, 2413, 2417, 2421
CaiI	CAGNNNCTG	5 cut(s)	710, 1070, 1253, 1523, 2318
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	2 cut(s)	2176, 2579
Cfr13I	GGNCC	6 cut(s)	334, 1133, 1520, 2267, 2544, 2909
CseI	GACGC	2 cut(s)	1598, 1628
CsiI	ACCWGGT	1 cut(s)	2710
Csp6I	GTAC	5 cut(s)	213, 788, 855, 1126, 2111
CviQI	GTAC	5 cut(s)	213, 788, 855, 1126, 2111
DdeI	CTNAG	7 cut(s)	1038, 1083, 1320, 1353, 1488, 1902, 2948
DinI	GGCGCC	1 cut(s)	2578
DpnI	GATC	8 cut(s)	420, 753, 1116, 1212, 1296, 1470, 1743, 2883
DpnII	GATC	8 cut(s)	418, 751, 1114, 1210, 1294, 1468, 1741, 2881
DraI	TTTAAA	1 cut(s)	1806
DriI	GACNNNNNGTC	1 cut(s)	1513
Eam1104I	CTCTTC	5 cut(s)	1260, 1438, 1731, 2162, 2405
Eam1105I	GACNNNNNGTC	1 cut(s)	1513
EarI	CTCTTC	5 cut(s)	1260, 1438, 1731, 2162, 2405
EciI	GGCGGA	2 cut(s)	1713, 2994
Ecl136II	GAGCTC	1 cut(s)	1840
Eco130I	CCWWGG	3 cut(s)	2298, 2391, 2901
Eco147I	AGGCCT	1 cut(s)	1165
Eco24I	GRGCYC	1 cut(s)	1842
Eco31I	GGTCTC	1 cut(s)	2200
Eco47I	GGWCC	3 cut(s)	334, 1520, 2544
Eco53kI	GAGCTC	1 cut(s)	1840
Eco57I	CTGAAG	4 cut(s)	297, 677, 996, 1275
Eco91I	GGTNACC	1 cut(s)	2622
EcoICRI	GAGCTC	1 cut(s)	1840
EcoNI	CCTNNNNNAGG	2 cut(s)	2072, 2247
EcoO109I	RGGNCCY	1 cut(s)	1520
EcoO65I	GGTNACC	1 cut(s)	2622
EcoRI	GAATTC	1 cut(s)	684
EcoRII	CCWGG	6 cut(s)	199, 703, 2116, 2272, 2710, 2805
EcoT14I	CCWWGG	3 cut(s)	2298, 2391, 2901
EcoT22I	ATGCAT	2 cut(s)	9, 2851
EcoT38I	GRGCYC	1 cut(s)	1842
EgeI	GGCGCC	1 cut(s)	2578
EheI	GGCGCC	1 cut(s)	2578
ErhI	CCWWGG	3 cut(s)	2298, 2391, 2901
Esp3I	CGTCTC	1 cut(s)	170
FalI	AAGNNNNNCTT	4 cut(s)	1728, 1760, 2384, 2416
FaqI	GGGAC	3 cut(s)	1665, 2335, 2546
FauI	CCCGC	1 cut(s)	1532
Fnu4HI	GCNGC	8 cut(s)	615, 981, 1286, 1622, 2240, 2526, 2787, 2790
FokI	GGATG	5 cut(s)	845, 890, 1274, 1456, 2090
FriOI	GRGCYC	1 cut(s)	1842
Fsp4HI	GCNGC	8 cut(s)	615, 981, 1286, 1622, 2240, 2526, 2787, 2790
GlaI	GCGC	2 cut(s)	2175, 2578
GluI	GCNGC	8 cut(s)	615, 981, 1286, 1622, 2240, 2526, 2787, 2790
GsaI	CCCAGC	2 cut(s)	1921, 2322
GsuI	CTGGAG	2 cut(s)	687, 2177
HaeII	RGCGCY	2 cut(s)	2177, 2580
HaeIII	GGCC	6 cut(s)	1135, 1165, 2242, 2269, 2866, 2911
HapII	CCGG	2 cut(s)	1560, 2210
HgaI	GACGC	2 cut(s)	1598, 1628
HhaI	GCGC	2 cut(s)	2176, 2579
Hin1I	GRCGYC	2 cut(s)	1609, 2577
Hin6I	GCGC	2 cut(s)	2174, 2577
HinP1I	GCGC	2 cut(s)	2174, 2577
HincII	GTYRAC	1 cut(s)	1181
HindII	GTYRAC	1 cut(s)	1181
HindIII	AAGCTT	2 cut(s)	992, 2417
HpaII	CCGG	2 cut(s)	1560, 2210
HphI	GGTGA	8 cut(s)	293, 338, 821, 1213, 1504, 1979, 2132, 2988
Hpy166II	GTNNAC	3 cut(s)	642, 788, 1181
Hpy8I	GTNNAC	3 cut(s)	642, 788, 1181
Hpy99I	CGWCG	1 cut(s)	2622
HpyCH4III	ACNGT	6 cut(s)	85, 137, 272, 550, 2555, 2857
HpyCH4IV	ACGT	6 cut(s)	262, 563, 650, 1144, 2014, 2163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	980, 1376, 1402, 2315
HpyF3I	CTNAG	7 cut(s)	1038, 1083, 1320, 1353, 1488, 1902, 2948
HpySE526I	ACGT	6 cut(s)	262, 563, 650, 1144, 2014, 2163
Hsp92I	GRCGYC	2 cut(s)	1609, 2577
HspAI	GCGC	2 cut(s)	2174, 2577
KasI	GGCGCC	1 cut(s)	2576
Kzo9I	GATC	8 cut(s)	418, 751, 1114, 1210, 1294, 1468, 1741, 2881
LmnI	GCTCC	8 cut(s)	202, 706, 799, 1797, 2023, 2212, 2428, 2809
Lsp1109I	GCAGC	7 cut(s)	601, 992, 1297, 1608, 2537, 2773, 2776
LweI	GCATC	9 cut(s)	319, 382, 949, 1987, 2365, 2596, 2836, 2858, 2917
MabI	ACCWGGT	1 cut(s)	2710
MaeII	ACGT	6 cut(s)	262, 563, 650, 1144, 2014, 2163
MaeIII	GTNAC	6 cut(s)	258, 281, 809, 893, 917, 2622
MalI	GATC	8 cut(s)	420, 753, 1116, 1212, 1296, 1470, 1743, 2883
MboI	GATC	8 cut(s)	418, 751, 1114, 1210, 1294, 1468, 1741, 2881
MflI	RGATCY	3 cut(s)	751, 1294, 1741
MhlI	GDGCHC	5 cut(s)	703, 742, 1842, 2155, 2470
Mly113I	GGCGCC	1 cut(s)	2577
MlyI	GAGTC	4 cut(s)	482, 1085, 1424, 2866
Mph1103I	ATGCAT	2 cut(s)	9, 2851
MseI	TTAA	6 cut(s)	1236, 1635, 1656, 1805, 1962, 2861
MslI	CAYNNNNRTG	1 cut(s)	2362
MspCI	CTTAAG	1 cut(s)	1634
MspI	CCGG	2 cut(s)	1560, 2210
MspR9I	CCNGG	7 cut(s)	201, 705, 1561, 2118, 2274, 2712, 2807
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	6 cut(s)	201, 705, 2118, 2274, 2712, 2807
MwoI	GCNNNNNNNGC	4 cut(s)	980, 1376, 1402, 2315
NarI	GGCGCC	1 cut(s)	2577
NciI	CCSGG	1 cut(s)	1561
NdeII	GATC	8 cut(s)	418, 751, 1114, 1210, 1294, 1468, 1741, 2881
NlaIV	GGNNCC	2 cut(s)	1296, 2578
NmeAIII	GCCGAG	1 cut(s)	1099
NmuCI	GTSAC	2 cut(s)	281, 809
NsiI	ATGCAT	2 cut(s)	9, 2851
NspI	RCATGY	5 cut(s)	11, 227, 401, 1400, 2642
NspV	TTCGAA	1 cut(s)	1747
PaeI	GCATGC	2 cut(s)	11, 1400
PagI	TCATGA	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	1165
PciI	ACATGT	1 cut(s)	2638
PctI	GAATGC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	1604
PfoI	TCCNGGA	2 cut(s)	2272, 2805
PkrI	GCNGC	8 cut(s)	616, 982, 1287, 1623, 2241, 2527, 2788, 2791
PleI	GAGTC	4 cut(s)	481, 1084, 1424, 2866
PluTI	GGCGCC	1 cut(s)	2580
PpsI	GAGTC	4 cut(s)	481, 1084, 1424, 2866
Ppu21I	YACGTR	3 cut(s)	263, 651, 1145
PpuMI	RGGWCCY	1 cut(s)	1520
PscI	ACATGT	1 cut(s)	2638
Psp124BI	GAGCTC	1 cut(s)	1842
Psp5II	RGGWCCY	1 cut(s)	1520
Psp6I	CCWGG	6 cut(s)	199, 703, 2116, 2272, 2710, 2805
PspEI	GGTNACC	1 cut(s)	2622
PspFI	CCCAGC	2 cut(s)	1917, 2318
PspGI	CCWGG	6 cut(s)	199, 703, 2116, 2272, 2710, 2805
PspN4I	GGNNCC	2 cut(s)	1296, 2578
PspPI	GGNCC	6 cut(s)	334, 1133, 1520, 2267, 2544, 2909
PspPPI	RGGWCCY	1 cut(s)	1520
PstNI	CAGNNNCTG	5 cut(s)	710, 1070, 1253, 1523, 2318
PsuI	RGATCY	3 cut(s)	751, 1294, 1741
RsaI	GTAC	5 cut(s)	214, 789, 856, 1127, 2112
RsaNI	GTAC	5 cut(s)	213, 788, 855, 1126, 2111
RseI	CAYNNNNRTG	1 cut(s)	2362
SacI	GAGCTC	1 cut(s)	1842
SaqAI	TTAA	6 cut(s)	1236, 1635, 1656, 1805, 1962, 2861
SatI	GCNGC	8 cut(s)	615, 981, 1286, 1622, 2240, 2526, 2787, 2790
Sau3AI	GATC	8 cut(s)	418, 751, 1114, 1210, 1294, 1468, 1741, 2881
Sau96I	GGNCC	6 cut(s)	334, 1133, 1520, 2267, 2544, 2909
ScaI	AGTACT	1 cut(s)	856
SchI	GAGTC	4 cut(s)	482, 1085, 1424, 2866
ScrFI	CCNGG	7 cut(s)	201, 705, 1561, 2118, 2274, 2712, 2807
SduI	GDGCHC	5 cut(s)	703, 742, 1842, 2155, 2470
SexAI	ACCWGGT	1 cut(s)	2710
SfaNI	GCATC	9 cut(s)	319, 382, 949, 1987, 2365, 2596, 2836, 2858, 2917
SfcI	CTRYAG	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	2578
SfuI	TTCGAA	1 cut(s)	1747
SinI	GGWCC	3 cut(s)	334, 1520, 2544
SmiI	ATTTAAAT	1 cut(s)	1806
SmiMI	CAYNNNNRTG	1 cut(s)	2362
SmlI	CTYRAG	5 cut(s)	357, 986, 1634, 1826, 2694
SmoI	CTYRAG	5 cut(s)	357, 986, 1634, 1826, 2694
SpeI	ACTAGT	2 cut(s)	437, 911
SphI	GCATGC	2 cut(s)	11, 1400
SseBI	AGGCCT	1 cut(s)	1165
SsiI	CCGC	6 cut(s)	332, 1292, 1539, 1724, 2239, 2979
SspDI	GGCGCC	1 cut(s)	2576
SspI	AATATT	3 cut(s)	62, 2256, 2436
SstI	GAGCTC	1 cut(s)	1842
StuI	AGGCCT	1 cut(s)	1165
StyD4I	CCNGG	7 cut(s)	199, 703, 1559, 2116, 2272, 2710, 2805
StyI	CCWWGG	3 cut(s)	2298, 2391, 2901
SwaI	ATTTAAAT	1 cut(s)	1806
TaaI	ACNGT	6 cut(s)	85, 137, 272, 550, 2555, 2857
TaiI	ACGT	6 cut(s)	265, 566, 653, 1147, 2017, 2166
TaqI	TCGA	5 cut(s)	390, 1117, 1213, 1747, 2587
TatI	WGTACW	4 cut(s)	212, 787, 854, 1125
TauI	GCSGC	1 cut(s)	2242
Tru1I	TTAA	6 cut(s)	1236, 1635, 1656, 1805, 1962, 2861
Tru9I	TTAA	6 cut(s)	1236, 1635, 1656, 1805, 1962, 2861
TscAI	CASTG	7 cut(s)	88, 140, 324, 715, 790, 2767, 2874
TseFI	GTSAC	2 cut(s)	281, 809
TseI	GCWGC	7 cut(s)	614, 980, 1285, 1621, 2525, 2786, 2789
Tsp45I	GTSAC	2 cut(s)	281, 809
TspGWI	ACGGA	4 cut(s)	300, 522, 1363, 2550
TspRI	CASTG	7 cut(s)	88, 140, 324, 715, 790, 2767, 2874
Van91I	CCANNNNNTGG	1 cut(s)	1604
Vha464I	CTTAAG	1 cut(s)	1634
VpaK11BI	GGWCC	3 cut(s)	334, 1520, 2544
XagI	CCTNNNNNAGG	2 cut(s)	2072, 2247
XapI	RAATTY	5 cut(s)	684, 1010, 1580, 1600, 2056
XbaI	TCTAGA	1 cut(s)	2875
XceI	RCATGY	5 cut(s)	11, 227, 401, 1400, 2642
XcmI	CCANNNNNNNNNTGG	3 cut(s)	140, 598, 1305
ZrmI	AGTACT	1 cut(s)	856
Zsp2I	ATGCAT	2 cut(s)	9, 2851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.