Belongs to the AAA ATPase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT3G19740 |
| fragaria_vesca | FvH4_4g36860 FvH4_4g36860 FvH4_4g36860 |
| malus_domestica | MD13G1006500.v1.1 MD16G1001500.v1.1 |
| prunus_persica | Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 |
| pyrus_communis | pycom13g00540 pycom16g00410 |
| rosa_chinensis | RchiOBHm_Chr4g0446611 |
| rosa_laevigata | RLG00000005645 |
| rosa_multiflora | Rmu_sc0036387.1_g000001 Rmu_ssc0000144.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00387010 |
| rosa_rugosa | Rorug04G0372800 Rorug04G0372900 Rorug04G0373000 Rorug04G0373100 |
| rosa_samantha | Rh4AG434400 Rh4BG443600 Rh4CG460900 Rh4DG442400 |
| rosa_wichuraiana | Rw4G037140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2828 |
| Acc16I | TGCGCA | 1 cut(s) | 299 |
| Acc36I | ACCTGC | 3 cut(s) | 368, 1739, 2828 |
| AccB1I | GGYRCC | 3 cut(s) | 1589, 2299, 2689 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 137, 1305, 2462 |
| AccBSI | CCGCTC | 1 cut(s) | 90 |
| AccI | GTMKAC | 1 cut(s) | 1888 |
| AccIII | TCCGGA | 1 cut(s) | 2171 |
| AciI | CCGC | 5 cut(s) | 60, 88, 534, 1574, 1736 |
| AclWI | GGATC | 7 cut(s) | 320, 746, 1789, 1820, 1981, 1989, 2945 |
| AcoI | YGGCCR | 4 cut(s) | 389, 401, 2854, 2946 |
| AcsI | RAATTY | 3 cut(s) | 811, 836, 3001 |
| AcyI | GRCGYC | 2 cut(s) | 1694, 1811 |
| AfaI | GTAC | 4 cut(s) | 346, 1219, 1719, 2403 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 137, 639, 1305, 2227, 2462, 2749 |
| AflIII | ACRYGT | 3 cut(s) | 1211, 1256, 1803 |
| AjnI | CCWGG | 4 cut(s) | 130, 1713, 1879, 2316 |
| AleI | CACNNNNGTG | 1 cut(s) | 2409 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1428, 1460, 2607, 2639 |
| Alw21I | GWGCWC | 4 cut(s) | 177, 465, 472, 1530 |
| Alw26I | GTCTC | 2 cut(s) | 2307, 2452 |
| Alw44I | GTGCAC | 1 cut(s) | 461 |
| AlwI | GGATC | 7 cut(s) | 320, 746, 1789, 1820, 1981, 1989, 2945 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3049 |
| Ama87I | CYCGRG | 1 cut(s) | 1905 |
| Aor13HI | TCCGGA | 1 cut(s) | 2171 |
| AoxI | GGCC | 7 cut(s) | 389, 401, 854, 2529, 2562, 2854, 2946 |
| ApaLI | GTGCAC | 1 cut(s) | 461 |
| ApoI | RAATTY | 3 cut(s) | 811, 836, 3001 |
| AseI | ATTAAT | 3 cut(s) | 680, 1637, 2967 |
| AspLEI | GCGC | 3 cut(s) | 192, 300, 2340 |
| AspS9I | GGNCC | 6 cut(s) | 85, 517, 854, 2218, 2502, 2529 |
| AsuC2I | CCSGG | 1 cut(s) | 2013 |
| AsuHPI | GGTGA | 6 cut(s) | 655, 1216, 1999, 2035, 2177, 2528 |
| AsuNHI | GCTAGC | 2 cut(s) | 196, 1732 |
| AvaI | CYCGRG | 1 cut(s) | 1905 |
| AvaII | GGWCC | 4 cut(s) | 85, 517, 2218, 2502 |
| AxyI | CCTNAGG | 1 cut(s) | 573 |
| BaeGI | GKGCMC | 4 cut(s) | 465, 1572, 1603, 2416 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 501, 534, 546, 579 |
| BalI | TGGCCA | 2 cut(s) | 391, 2856 |
| BanI | GGYRCC | 3 cut(s) | 1589, 2299, 2689 |
| BanII | GRGCYC | 2 cut(s) | 177, 472 |
| BauI | CACGAG | 1 cut(s) | 80 |
| BbsI | GAAGAC | 2 cut(s) | 1434, 2146 |
| Bbv12I | GWGCWC | 4 cut(s) | 177, 465, 472, 1530 |
| BccI | CCATC | 9 cut(s) | 926, 944, 1244, 1952, 2045, 2296, 2456, 2795, 2912 |
| BceAI | ACGGC | 1 cut(s) | 617 |
| BciT130I | CCWGG | 4 cut(s) | 132, 1715, 1881, 2318 |
| BclI | TGATCA | 4 cut(s) | 1506, 2083, 2674, 3031 |
| BcnI | CCSGG | 1 cut(s) | 2013 |
| BcoDI | GTCTC | 2 cut(s) | 2307, 2452 |
| BfaI | CTAG | 8 cut(s) | 182, 197, 968, 1409, 1733, 2133, 2580, 2760 |
| BfmI | CTRYAG | 2 cut(s) | 363, 1594 |
| BfuAI | ACCTGC | 3 cut(s) | 368, 1739, 2828 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 862, 1598 |
| BglII | AGATCT | 1 cut(s) | 1678 |
| Bme1390I | CCNGG | 5 cut(s) | 132, 1715, 1881, 2013, 2318 |
| Bme18I | GGWCC | 4 cut(s) | 85, 517, 2218, 2502 |
| BmeT110I | CYCGRG | 1 cut(s) | 1905 |
| BmgT120I | GGNCC | 6 cut(s) | 85, 517, 854, 2218, 2502, 2529 |
| BmiI | GGNNCC | 7 cut(s) | 519, 855, 1591, 2220, 2301, 2530, 2691 |
| BmrFI | CCNGG | 5 cut(s) | 132, 1715, 1881, 2013, 2318 |
| BmrI | ACTGGG | 1 cut(s) | 2791 |
| BmtI | GCTAGC | 2 cut(s) | 200, 1736 |
| BmuI | ACTGGG | 1 cut(s) | 2791 |
| BpiI | GAAGAC | 2 cut(s) | 1434, 2146 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 74, 106, 2359, 2391 |
| BpmI | CTGGAG | 1 cut(s) | 1880 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1396 |
| BpuEI | CTTGAG | 1 cut(s) | 1544 |
| BpuMI | CCSGG | 1 cut(s) | 2013 |
| Bsa29I | ATCGAT | 1 cut(s) | 1230 |
| BsaAI | YACGTR | 1 cut(s) | 1212 |
| BsaBI | GATNNNNATC | 2 cut(s) | 30, 437 |
| BsaHI | GRCGYC | 2 cut(s) | 1694, 1811 |
| BsaI | GGTCTC | 2 cut(s) | 2307, 2452 |
| BsaJI | CCNNGG | 3 cut(s) | 153, 701, 1560 |
| BsaWI | WCCGGW | 1 cut(s) | 2171 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1049, 1079, 2607, 2637 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 137, 639, 1305, 2227, 2462, 2749 |
| Bse1I | ACTGG | 7 cut(s) | 239, 737, 985, 1902, 1928, 2403, 2786 |
| Bse21I | CCTNAGG | 1 cut(s) | 573 |
| Bse3DI | GCAATG | 1 cut(s) | 44 |
| Bse8I | GATNNNNATC | 2 cut(s) | 30, 437 |
| BseAI | TCCGGA | 1 cut(s) | 2171 |
| BseBI | CCWGG | 4 cut(s) | 132, 1715, 1881, 2318 |
| BseCI | ATCGAT | 1 cut(s) | 1230 |
| BseDI | CCNNGG | 3 cut(s) | 153, 701, 1560 |
| BseJI | GATNNNNATC | 2 cut(s) | 30, 437 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 137, 639, 1305, 2227, 2462, 2749 |
| BseMI | GCAATG | 1 cut(s) | 44 |
| BseMII | CTCAG | 3 cut(s) | 587, 719, 2357 |
| BseNI | ACTGG | 7 cut(s) | 239, 737, 985, 1902, 1928, 2403, 2786 |
| BseRI | GAGGAG | 2 cut(s) | 561, 1489 |
| BseSI | GKGCMC | 4 cut(s) | 465, 1572, 1603, 2416 |
| BseYI | CCCAGC | 2 cut(s) | 1608, 2636 |
| BsgI | GTGCAG | 1 cut(s) | 936 |
| Bsh1285I | CGRYCG | 1 cut(s) | 902 |
| BshFI | GGCC | 7 cut(s) | 391, 403, 856, 2531, 2564, 2856, 2948 |
| BshNI | GGYRCC | 3 cut(s) | 1589, 2299, 2689 |
| BshVI | ATCGAT | 1 cut(s) | 1230 |
| BsiEI | CGRYCG | 1 cut(s) | 902 |
| BsiHKAI | GWGCWC | 4 cut(s) | 177, 465, 472, 1530 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1905 |
| BsiSI | CCGG | 3 cut(s) | 404, 2013, 2172 |
| BslFI | GGGAC | 1 cut(s) | 503 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 137, 639, 1305, 2227, 2462, 2749 |
| BsmAI | GTCTC | 2 cut(s) | 2307, 2452 |
| BsmFI | GGGAC | 1 cut(s) | 503 |
| BsmI | GAATGC | 2 cut(s) | 2107, 3073 |
| BsnI | GGCC | 7 cut(s) | 391, 403, 856, 2531, 2564, 2856, 2948 |
| Bso31I | GGTCTC | 2 cut(s) | 2307, 2452 |
| BsoBI | CYCGRG | 1 cut(s) | 1905 |
| Bsp1286I | GDGCHC | 7 cut(s) | 177, 465, 472, 1530, 1572, 1603, 2416 |
| Bsp13I | TCCGGA | 1 cut(s) | 2171 |
| Bsp1407I | TGTACA | 1 cut(s) | 344 |
| Bsp19I | CCATGG | 2 cut(s) | 701, 1560 |
| BspACI | CCGC | 5 cut(s) | 60, 88, 534, 1574, 1736 |
| BspANI | GGCC | 7 cut(s) | 391, 403, 856, 2531, 2564, 2856, 2948 |
| BspCNI | CTCAG | 3 cut(s) | 586, 720, 2358 |
| BspDI | ATCGAT | 1 cut(s) | 1230 |
| BspEI | TCCGGA | 1 cut(s) | 2171 |
| BspHI | TCATGA | 1 cut(s) | 1447 |
| BspLI | GGNNCC | 7 cut(s) | 519, 855, 1591, 2220, 2301, 2530, 2691 |
| BspMAI | CTGCAG | 1 cut(s) | 1598 |
| BspMI | ACCTGC | 3 cut(s) | 368, 1739, 2828 |
| BspOI | GCTAGC | 2 cut(s) | 200, 1736 |
| BspPI | GGATC | 7 cut(s) | 320, 746, 1789, 1820, 1981, 1989, 2945 |
| BspQI | GCTCTTC | 2 cut(s) | 492, 2334 |
| BspT107I | GGYRCC | 3 cut(s) | 1589, 2299, 2689 |
| BspTNI | GGTCTC | 2 cut(s) | 2307, 2452 |
| BsrBI | CCGCTC | 1 cut(s) | 90 |
| BsrDI | GCAATG | 1 cut(s) | 44 |
| BsrGI | TGTACA | 1 cut(s) | 344 |
| BsrI | ACTGG | 7 cut(s) | 239, 737, 985, 1902, 1928, 2403, 2786 |
| BssECI | CCNNGG | 3 cut(s) | 153, 701, 1560 |
| BssNAI | GTATAC | 1 cut(s) | 1889 |
| BssNI | GRCGYC | 2 cut(s) | 1694, 1811 |
| BssSI | CACGAG | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 3 cut(s) | 153, 701, 1560 |
| Bst1107I | GTATAC | 1 cut(s) | 1889 |
| Bst2BI | CACGAG | 1 cut(s) | 80 |
| Bst2UI | CCWGG | 4 cut(s) | 132, 1715, 1881, 2318 |
| Bst4CI | ACNGT | 5 cut(s) | 514, 1917, 2430, 2686, 3091 |
| Bst6I | CTCTTC | 3 cut(s) | 492, 2334, 2907 |
| BstACI | GRCGYC | 2 cut(s) | 1694, 1811 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 43 |
| BstAUI | TGTACA | 1 cut(s) | 344 |
| BstBAI | YACGTR | 1 cut(s) | 1212 |
| BstC8I | GCNNGC | 8 cut(s) | 194, 198, 1287, 1594, 1734, 2154, 2342, 2832 |
| BstDEI | CTNAG | 7 cut(s) | 473, 573, 728, 1396, 1491, 2333, 2366 |
| BstDSI | CCRYGG | 2 cut(s) | 701, 1560 |
| BstHHI | GCGC | 3 cut(s) | 192, 300, 2340 |
| BstMAI | GTCTC | 2 cut(s) | 2307, 2452 |
| BstMCI | CGRYCG | 1 cut(s) | 902 |
| BstNI | CCWGG | 4 cut(s) | 132, 1715, 1881, 2318 |
| BstNSI | RCATGY | 5 cut(s) | 1289, 1477, 1807, 2344, 2834 |
| BstSCI | CCNGG | 5 cut(s) | 130, 1713, 1879, 2011, 2316 |
| BstSFI | CTRYAG | 2 cut(s) | 363, 1594 |
| BstSLI | GKGCMC | 4 cut(s) | 465, 1572, 1603, 2416 |
| BstV2I | GAAGAC | 2 cut(s) | 1434, 2146 |
| BstX2I | RGATCY | 3 cut(s) | 751, 1678, 1981 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 399 |
| BstYI | RGATCY | 3 cut(s) | 751, 1678, 1981 |
| BstZ17I | GTATAC | 1 cut(s) | 1889 |
| Bsu15I | ATCGAT | 1 cut(s) | 1230 |
| Bsu36I | CCTNAGG | 1 cut(s) | 573 |
| BsuRI | GGCC | 7 cut(s) | 391, 403, 856, 2531, 2564, 2856, 2948 |
| BsuTUI | ATCGAT | 1 cut(s) | 1230 |
| BtgI | CCRYGG | 2 cut(s) | 701, 1560 |
| BtgZI | GCGATG | 2 cut(s) | 261, 2031 |
| BtsI | GCAGTG | 2 cut(s) | 672, 1727 |
| BtsIMutI | CAGTG | 9 cut(s) | 232, 672, 744, 1429, 1727, 1895, 1983, 2684, 2691 |
| BveI | ACCTGC | 3 cut(s) | 368, 1739, 2828 |
| Cac8I | GCNNGC | 8 cut(s) | 194, 198, 1287, 1594, 1734, 2154, 2342, 2832 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3049 |
| CciI | TCATGA | 1 cut(s) | 1447 |
| CfoI | GCGC | 3 cut(s) | 192, 300, 2340 |
| Cfr13I | GGNCC | 6 cut(s) | 85, 517, 854, 2218, 2502, 2529 |
| ClaI | ATCGAT | 1 cut(s) | 1230 |
| CseI | GACGC | 3 cut(s) | 532, 1683, 1800 |
| CsiI | ACCWGGT | 3 cut(s) | 130, 1713, 2316 |
| Csp6I | GTAC | 4 cut(s) | 345, 1218, 1718, 2402 |
| CviQI | GTAC | 4 cut(s) | 345, 1218, 1718, 2402 |
| DdeI | CTNAG | 7 cut(s) | 473, 573, 728, 1396, 1491, 2333, 2366 |
| EaeI | YGGCCR | 4 cut(s) | 389, 401, 2854, 2946 |
| Eam1104I | CTCTTC | 3 cut(s) | 492, 2334, 2907 |
| EarI | CTCTTC | 3 cut(s) | 492, 2334, 2907 |
| Ecl136II | GAGCTC | 2 cut(s) | 175, 470 |
| Eco130I | CCWWGG | 3 cut(s) | 153, 701, 1560 |
| Eco24I | GRGCYC | 2 cut(s) | 177, 472 |
| Eco31I | GGTCTC | 2 cut(s) | 2307, 2452 |
| Eco47I | GGWCC | 4 cut(s) | 85, 517, 2218, 2502 |
| Eco53kI | GAGCTC | 2 cut(s) | 175, 470 |
| Eco81I | CCTNAGG | 1 cut(s) | 573 |
| Eco88I | CYCGRG | 1 cut(s) | 1905 |
| EcoICRI | GAGCTC | 2 cut(s) | 175, 470 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2529 |
| EcoRII | CCWGG | 4 cut(s) | 130, 1713, 1879, 2316 |
| EcoT14I | CCWWGG | 3 cut(s) | 153, 701, 1560 |
| EcoT22I | ATGCAT | 2 cut(s) | 2731, 2832 |
| EcoT38I | GRGCYC | 2 cut(s) | 177, 472 |
| ErhI | CCWWGG | 3 cut(s) | 153, 701, 1560 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 93, 125 |
| FaqI | GGGAC | 1 cut(s) | 503 |
| FauI | CCCGC | 2 cut(s) | 541, 1581 |
| FbaI | TGATCA | 4 cut(s) | 1506, 2083, 2674, 3031 |
| FblI | GTMKAC | 1 cut(s) | 1888 |
| FriOI | GRGCYC | 2 cut(s) | 177, 472 |
| FspBI | CTAG | 8 cut(s) | 182, 197, 968, 1409, 1733, 2133, 2580, 2760 |
| FspI | TGCGCA | 1 cut(s) | 299 |
| GlaI | GCGC | 3 cut(s) | 191, 299, 2339 |
| GsaI | CCCAGC | 2 cut(s) | 1612, 2640 |
| GsuI | CTGGAG | 1 cut(s) | 1880 |
| HaeIII | GGCC | 7 cut(s) | 391, 403, 856, 2531, 2564, 2856, 2948 |
| HapII | CCGG | 3 cut(s) | 404, 2013, 2172 |
| HgaI | GACGC | 3 cut(s) | 532, 1683, 1800 |
| HhaI | GCGC | 3 cut(s) | 192, 300, 2340 |
| Hin1I | GRCGYC | 2 cut(s) | 1694, 1811 |
| Hin6I | GCGC | 3 cut(s) | 190, 298, 2338 |
| HinP1I | GCGC | 3 cut(s) | 190, 298, 2338 |
| HincII | GTYRAC | 1 cut(s) | 1005 |
| HindII | GTYRAC | 1 cut(s) | 1005 |
| HpaII | CCGG | 3 cut(s) | 404, 2013, 2172 |
| HphI | GGTGA | 6 cut(s) | 655, 1216, 1999, 2035, 2177, 2528 |
| Hpy166II | GTNNAC | 8 cut(s) | 463, 499, 1005, 1184, 1665, 1889, 2404, 2682 |
| Hpy8I | GTNNAC | 8 cut(s) | 463, 499, 1005, 1184, 1665, 1889, 2404, 2682 |
| Hpy99I | CGWCG | 2 cut(s) | 526, 1486 |
| HpyAV | CCTTC | 7 cut(s) | 218, 236, 280, 905, 1217, 1415, 2181 |
| HpyCH4III | ACNGT | 5 cut(s) | 514, 1917, 2430, 2686, 3091 |
| HpyCH4IV | ACGT | 3 cut(s) | 1211, 1258, 2846 |
| HpyF3I | CTNAG | 7 cut(s) | 473, 573, 728, 1396, 1491, 2333, 2366 |
| HpySE526I | ACGT | 3 cut(s) | 1211, 1258, 2846 |
| Hsp92I | GRCGYC | 2 cut(s) | 1694, 1811 |
| HspAI | GCGC | 3 cut(s) | 190, 298, 2338 |
| Kpn2I | TCCGGA | 1 cut(s) | 2171 |
| Ksp22I | TGATCA | 4 cut(s) | 1506, 2083, 2674, 3031 |
| LguI | GCTCTTC | 2 cut(s) | 492, 2334 |
| LmnI | GCTCC | 7 cut(s) | 172, 467, 765, 1617, 1882, 2014, 2256 |
| MabI | ACCWGGT | 3 cut(s) | 130, 1713, 2316 |
| MaeI | CTAG | 8 cut(s) | 182, 197, 968, 1409, 1733, 2133, 2580, 2760 |
| MaeII | ACGT | 3 cut(s) | 1211, 1258, 2846 |
| MaeIII | GTNAC | 5 cut(s) | 1812, 1987, 2545, 2777, 2842 |
| MbiI | CCGCTC | 1 cut(s) | 90 |
| MfeI | CAATTG | 8 cut(s) | 49, 558, 612, 906, 1554, 1740, 1848, 2883 |
| MflI | RGATCY | 3 cut(s) | 751, 1678, 1981 |
| MhlI | GDGCHC | 7 cut(s) | 177, 465, 472, 1530, 1572, 1603, 2416 |
| MlsI | TGGCCA | 2 cut(s) | 391, 2856 |
| MluNI | TGGCCA | 2 cut(s) | 391, 2856 |
| MlyI | GAGTC | 3 cut(s) | 739, 2641, 3055 |
| MmeI | TCCRAC | 1 cut(s) | 2480 |
| Mox20I | TGGCCA | 2 cut(s) | 391, 2856 |
| Mph1103I | ATGCAT | 2 cut(s) | 2731, 2832 |
| MroI | TCCGGA | 1 cut(s) | 2171 |
| MscI | TGGCCA | 2 cut(s) | 391, 2856 |
| MslI | CAYNNNNRTG | 3 cut(s) | 773, 1565, 2409 |
| Msp20I | TGGCCA | 2 cut(s) | 391, 2856 |
| MspI | CCGG | 3 cut(s) | 404, 2013, 2172 |
| MspR9I | CCNGG | 5 cut(s) | 132, 1715, 1881, 2013, 2318 |
| MunI | CAATTG | 8 cut(s) | 49, 558, 612, 906, 1554, 1740, 1848, 2883 |
| Mva1269I | GAATGC | 2 cut(s) | 2107, 3073 |
| MvaI | CCWGG | 4 cut(s) | 132, 1715, 1881, 2318 |
| NciI | CCSGG | 1 cut(s) | 2013 |
| NcoI | CCATGG | 2 cut(s) | 701, 1560 |
| NheI | GCTAGC | 2 cut(s) | 196, 1732 |
| NlaIV | GGNNCC | 7 cut(s) | 519, 855, 1591, 2220, 2301, 2530, 2691 |
| NmeAIII | GCCGAG | 1 cut(s) | 3013 |
| NmuCI | GTSAC | 4 cut(s) | 1812, 1987, 2545, 2777 |
| NsbI | TGCGCA | 1 cut(s) | 299 |
| NsiI | ATGCAT | 2 cut(s) | 2731, 2832 |
| NspI | RCATGY | 5 cut(s) | 1289, 1477, 1807, 2344, 2834 |
| OliI | CACNNNNGTG | 1 cut(s) | 2409 |
| PaeI | GCATGC | 3 cut(s) | 1289, 2344, 2834 |
| PagI | TCATGA | 1 cut(s) | 1447 |
| PaqCI | CACCTGC | 1 cut(s) | 2828 |
| PciI | ACATGT | 1 cut(s) | 1803 |
| PciSI | GCTCTTC | 2 cut(s) | 492, 2334 |
| PctI | GAATGC | 2 cut(s) | 2107, 3073 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 137, 1305, 2462 |
| Ple19I | CGATCG | 1 cut(s) | 902 |
| PleI | GAGTC | 3 cut(s) | 738, 2641, 3054 |
| PpsI | GAGTC | 3 cut(s) | 738, 2641, 3054 |
| Ppu21I | YACGTR | 1 cut(s) | 1212 |
| PscI | ACATGT | 1 cut(s) | 1803 |
| PshBI | ATTAAT | 3 cut(s) | 680, 1637, 2967 |
| Psp124BI | GAGCTC | 2 cut(s) | 177, 472 |
| Psp6I | CCWGG | 4 cut(s) | 130, 1713, 1879, 2316 |
| PspFI | CCCAGC | 2 cut(s) | 1608, 2636 |
| PspGI | CCWGG | 4 cut(s) | 130, 1713, 1879, 2316 |
| PspN4I | GGNNCC | 7 cut(s) | 519, 855, 1591, 2220, 2301, 2530, 2691 |
| PspPI | GGNCC | 6 cut(s) | 85, 517, 854, 2218, 2502, 2529 |
| PstI | CTGCAG | 1 cut(s) | 1598 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3049 |
| PsuI | RGATCY | 3 cut(s) | 751, 1678, 1981 |
| PvuI | CGATCG | 1 cut(s) | 902 |
| RsaI | GTAC | 4 cut(s) | 346, 1219, 1719, 2403 |
| RsaNI | GTAC | 4 cut(s) | 345, 1218, 1718, 2402 |
| RseI | CAYNNNNRTG | 3 cut(s) | 773, 1565, 2409 |
| SacI | GAGCTC | 2 cut(s) | 177, 472 |
| SapI | GCTCTTC | 2 cut(s) | 492, 2334 |
| Sau96I | GGNCC | 6 cut(s) | 85, 517, 854, 2218, 2502, 2529 |
| SbfI | CCTGCAGG | 1 cut(s) | 1598 |
| SchI | GAGTC | 3 cut(s) | 739, 2641, 3055 |
| ScrFI | CCNGG | 5 cut(s) | 132, 1715, 1881, 2013, 2318 |
| SdaI | CCTGCAGG | 1 cut(s) | 1598 |
| SduI | GDGCHC | 7 cut(s) | 177, 465, 472, 1530, 1572, 1603, 2416 |
| SexAI | ACCWGGT | 3 cut(s) | 130, 1713, 2316 |
| SfcI | CTRYAG | 2 cut(s) | 363, 1594 |
| SinI | GGWCC | 4 cut(s) | 85, 517, 2218, 2502 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 773, 1565, 2409 |
| SmlI | CTYRAG | 1 cut(s) | 1523 |
| SmoI | CTYRAG | 1 cut(s) | 1523 |
| SphI | GCATGC | 3 cut(s) | 1289, 2344, 2834 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1598 |
| SsiI | CCGC | 5 cut(s) | 60, 88, 534, 1574, 1736 |
| SspI | AATATT | 1 cut(s) | 590 |
| SspMI | CTAG | 8 cut(s) | 182, 197, 968, 1409, 1733, 2133, 2580, 2760 |
| SstI | GAGCTC | 2 cut(s) | 177, 472 |
| StyD4I | CCNGG | 5 cut(s) | 130, 1713, 1879, 2011, 2316 |
| StyI | CCWWGG | 3 cut(s) | 153, 701, 1560 |
| TaaI | ACNGT | 5 cut(s) | 514, 1917, 2430, 2686, 3091 |
| TaiI | ACGT | 3 cut(s) | 1214, 1261, 2849 |
| TaqI | TCGA | 5 cut(s) | 24, 69, 1230, 2311, 2395 |
| TatI | WGTACW | 1 cut(s) | 344 |
| TauI | GCSGC | 1 cut(s) | 1739 |
| TscAI | CASTG | 9 cut(s) | 239, 679, 744, 1429, 1734, 1902, 1983, 2684, 2691 |
| TseFI | GTSAC | 4 cut(s) | 1812, 1987, 2545, 2777 |
| Tsp45I | GTSAC | 4 cut(s) | 1812, 1987, 2545, 2777 |
| TspGWI | ACGGA | 4 cut(s) | 480, 680, 1109, 1492 |
| TspRI | CASTG | 9 cut(s) | 239, 679, 744, 1429, 1734, 1902, 1983, 2684, 2691 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 137, 1305, 2462 |
| VneI | GTGCAC | 1 cut(s) | 461 |
| VpaK11BI | GGWCC | 4 cut(s) | 85, 517, 2218, 2502 |
| VspI | ATTAAT | 3 cut(s) | 680, 1637, 2967 |
| XapI | RAATTY | 3 cut(s) | 811, 836, 3001 |
| XbaI | TCTAGA | 1 cut(s) | 1408 |
| XceI | RCATGY | 5 cut(s) | 1289, 1477, 1807, 2344, 2834 |
| XmiI | GTMKAC | 1 cut(s) | 1888 |
| XspI | CTAG | 8 cut(s) | 182, 197, 968, 1409, 1733, 2133, 2580, 2760 |
| Zsp2I | ATGCAT | 2 cut(s) | 2731, 2832 |