Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036387.1

Orthogroup ID

OG0004154

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2036

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036387.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

agatcttcaagttccactactcgtgcttgacagcagtgttcttgctccttatgattttggtgatgattgtcaaacggagtctgaatcagaggatgatggtgtggaggagtgtacttcagagtcagagattgatgatgagaatgatgcgagtaatgaagaagaatggactagtagtaatgaggcaaagtcagattgtagtgataaagatgaagttgatgtgcatgcaaaggctgaagcagccctcaagaagcttgttcctcttgaacaattttctaagatggtatctggggaaattaatgttgaatctgagccctcaaagtcagaagctgctgagcctaccgataaatccaaagaatccaaacgaccactgaagaaaggtgatcgggtgaagtatattgggcctactttacgtgttgaagctgataacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

142

Amino Acids

15.6

Weight (kDa)

4.17

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT3G19740
fragaria_vesca	FvH4_4g36860 FvH4_4g36860 FvH4_4g36860
malus_domestica	MD13G1006500.v1.1 MD16G1001500.v1.1
prunus_persica	Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1
pyrus_communis	pycom13g00540 pycom16g00410
rosa_chinensis	RchiOBHm_Chr4g0446611
rosa_laevigata	RLG00000005645
rosa_multiflora	Rmu_sc0036387.1_g000001 Rmu_ssc0000144.1_g000003
rosa_roxburghii	Rroxscaffold_5G00387010
rosa_rugosa	Rorug04G0372800 Rorug04G0372900 Rorug04G0373000 Rorug04G0373100
rosa_samantha	Rh4AG434400 Rh4BG443600 Rh4CG460900 Rh4DG442400
rosa_wichuraiana	Rw4G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	3 cut(s)	100, 253, 390
AfaI	GTAC	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	4 cut(s)	9, 264, 303, 417
AhlI	ACTAGT	1 cut(s)	168
AluBI	AGCT	3 cut(s)	251, 327, 420
AluI	AGCT	3 cut(s)	251, 327, 420
AlwNI	CAGNNNCTG	1 cut(s)	327
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	237, 327
AseI	ATTAAT	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	72, 390, 398
BanII	GRGCYC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	249, 314
BccI	CCATC	2 cut(s)	90, 272
BcuI	ACTAGT	1 cut(s)	168
BfaI	CTAG	1 cut(s)	169
BglII	AGATCT	1 cut(s)	2
BisI	GCNGC	2 cut(s)	238, 328
BlpI	GCTNAGC	1 cut(s)	331
BlsI	GCNGC	2 cut(s)	239, 329
BmgT120I	GGNCC	1 cut(s)	399
BmsI	GCATC	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	411
BseGI	GGATG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	298, 322
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	249, 314
BshFI	GGCC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	2, 380
Bsp1720I	GCTNAGC	1 cut(s)	331
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	299, 323
BssMI	GATC	2 cut(s)	2, 380
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	274, 307, 331
BstF5I	GGATG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	5, 383
BstMBI	GATC	2 cut(s)	2, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	249, 314
BstX2I	RGATCY	1 cut(s)	2
BstYI	RGATCY	1 cut(s)	2
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 366
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	8 cut(s)	231, 240, 251, 311, 327, 335, 401, 420
CviKI_1	RGCY	8 cut(s)	231, 240, 251, 311, 327, 335, 401, 420
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	3 cut(s)	274, 307, 331
DpnI	GATC	2 cut(s)	4, 382
DpnII	GATC	2 cut(s)	2, 380
Eco24I	GRGCYC	1 cut(s)	313
Eco57I	CTGAAG	3 cut(s)	100, 253, 390
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	1 cut(s)	225
FaiI	YATR	3 cut(s)	52, 223, 394
FatI	CATG	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	238, 328
FokI	GGATG	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	238, 328
FspBI	CTAG	1 cut(s)	169
GluI	GCNGC	2 cut(s)	238, 328
HaeIII	GGCC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	5 cut(s)	78, 84, 120, 303, 354
HphI	GGTGA	3 cut(s)	72, 390, 398
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	7 cut(s)	83, 89, 119, 125, 191, 308, 323
Hpy188III	TCNNGA	2 cut(s)	245, 261
Hpy8I	GTNNAC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	2 cut(s)	221, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	3 cut(s)	274, 307, 331
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	2, 380
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	249, 314
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	169
MaeII	ACGT	1 cut(s)	410
MalI	GATC	2 cut(s)	4, 382
MboI	GATC	2 cut(s)	2, 380
MboII	GAAGA	3 cut(s)	168, 171, 383
MflI	RGATCY	1 cut(s)	2
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	2 cut(s)	267, 292
MlyI	GAGTC	2 cut(s)	87, 129
MnlI	CCTC	6 cut(s)	83, 98, 173, 252, 268, 323
MseI	TTAA	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	2 cut(s)	2, 380
NlaIII	CATG	1 cut(s)	225
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	84, 303, 354
PkrI	GCNGC	2 cut(s)	239, 329
PleI	GAGTC	2 cut(s)	86, 128
PpsI	GAGTC	2 cut(s)	86, 128
Ppu21I	YACGTR	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	2
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	2 cut(s)	238, 328
Sau3AI	GATC	2 cut(s)	2, 380
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	2 cut(s)	87, 129
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	5 cut(s)	253, 329, 380, 413, 422
SfaNI	GCATC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SpeI	ACTAGT	1 cut(s)	168
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	267, 292
SspMI	CTAG	1 cut(s)	169
TaiI	ACGT	1 cut(s)	413
TasI	AATT	2 cut(s)	267, 292
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	3 cut(s)	84, 303, 354
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TscAI	CASTG	2 cut(s)	41, 373
TseI	GCWGC	2 cut(s)	237, 327
TspDTI	ATGAA	2 cut(s)	169, 223
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	2 cut(s)	41, 373
VspI	ATTAAT	1 cut(s)	295
XceI	RCATGY	1 cut(s)	225
XspI	CTAG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.