Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004154

Physical Location & Seq

Genomic Coordinates Forward (+)

64368657 .. 64380111

Gene Structure 11455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG442400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGATGTATGCTAGGAGAATAAAGTGCAGAAATCAGAGATGGATGCTTCAACTGTCCAATTCTATAAAGCCAAGCTACGTTCATCATGGTTCTTCTCAATCGTTGGGACGTATTACAGTTCCTGCAAACTACTACTCAGATGCTAGTTTTATTAGAAGCCGTCTCATAGATTCGTTCTCATCGCGAAGTGGTGTATCTGCTAATAGTTGCACTGTTTTGCAAGTGAGGTCTAATACGTGTTTGAAGGGTAGTCAGTTACGCTTCTACAGCTCAGAAGGCGATGGAAGTAATGCAAATGAGGGTAAACAGTTACCAGTGAAAGATGGTGCTAACTTTGATAAAGAAAAGACTTGGCAAGAAAAGGCTAGGAAAGATGTTAGGCCTTCTGATGCACACGCTCTACTTGGGGAGCAAGATCAAACGGAATGGCTTAATAGTCACAAACTTACCATTGAGAGTAAAAAGAAAGAATCACCTTTTTTGACTAGACGAGAGAAGTTCAAAAATGAGTTTCTATGGAGGGTTGTTCCATGGGAGAAGATAACTGTTTCATGGGAGACGTTTCCTTACTATATCGATGAACCCACCAAAAATCTTTTGGTGGAATGTGCTGCTGCTCATTTGAAACACAAAAAGTTCACTTCTACTTATGGTTCTCGTTTGACATCTTCAAGTGGGAGAATACTGCTTCAGAGTGCTCCAGGCACTGAGCTTTACCGTGAAAGATTAGTTAGAGCTCTTGCGCGAGATCTTCAAGTTCCACTACTCGTGCTTGACAGCAGTGTTCTTGCTCCTTATGATTTTGGTGATGATTGTCAAACGGAGTCTGAATCAGAGGATGATGGTGTGGAGGAGTGTACTTCAGAGTCAGAGATTGATGATGAGAATGATGCGAGTAATGAAGAAGAATGGACTAGTAGTAATGAGGCAAAGTCAGATTGTAGTGATAAAGATGAAGTTGATGTGCATGCAAAGGCTGAAGCAGCCCTCAAGAAGCTTGTTCCTCTTGAACAATTTTCTAAGATGGTATCTGGGGAAACTAATGTTGAATCTGAGTCCTCAAAGTCAGAAGCTGCTGAGCCTACCGATAAATCCAAAGAATCCAAACGACCACTGAAGAAAGGTGATCGGGTGAAGTATATTGGGCCTACTTTACGTGTTGAAGCTGATAACAGGCCTTTACCGAATGGTCAACGTGGGGAGGTATATGAGGTGAGCGGAGATCGAATTGCTGTTATATTGGATATAAATGATGACACAGGAAGTGATGTGGATAAAGAGGAGAAAGGAGAAGACCAGCCTGCAAACCCACCAGTTTATTGGATACATGCAAATCATGTCGAGCATGTTGATGAGACTCAGACTGAGGATTGTTATATTGCAATGGAGGCCCTACGTGAGGTATTGCATGCCAAGCAACCTCTTATTGTCTATTTTCCAGACTCTTCTCAATGGTTGTCTAGGGCAGTTCCCAAGTCAAACAGGAAGGACTTTGTCAATAAGGTGCAAGAAATTTTTGACCAGTTATCAGGTCCTGTTGTTTTAATCTGTGGACAGAACAAAACTGAATCCGAGTCAAAGGAGAAAGAGAAATTTACGATGATACTACCAAATTTTGGTCGTCTTGCAAAGCTGCCTGTTTCTCTTAAGCGTCTTACTGAGGGACTTAAGGCAACAAAGCGATCTGATGAGGATGAAATATATAAGCTCTTCTCAAATGTGTTCTGCATACATCCCCCAAAGGAAGAAGAGGTACTTCGGACATTCAATAAACAGATTGAAGAAGATGGGAGAATTGTGTTGTCAAGGAGCAATTTGAATGAATTACATAAGGTTCTCGAGGAACATGAGCTATCATGCATGGACCTATTGCAAGTAGATACTGATGGTGTGATCTTGACAAAGCGAAAAGCTGAGAAAGTAGTTGGCTGGGCTAAAAGCCATTACTTATCATCTTGTCTTGTTCCTTCCGTTAAAGGTGACAGACTGCAGCTTCCTCGTGAAAGCCTTGAAGTAGCAATTTCACGTTTGAAGGAGCAAGAAAGTTTGTCTCGGAAACCCTCTCAAAATTTGAAGAACCTTGCGAAGGATGAATATGAGAGTAACTTTGTTTCAGCAGTTGTACCTCCTGGTGAAATTGGTGTCAGGTTTGATGATGTAGGTGCTCTGGAGGAGGTGAAGAAGGCTTTGAATGAACTAGTCATTCTTCCAATGAGAAGACCAGAGCTTTTCTCTCGTGGAAACTTGTTGCGGCCTTGCAAAGGGATATTACTTTTTGGTCCTCCTGGAACTGGGAAGACCCTTCTTGCGAAGGCACTTGCAACAGAAGCTGGGGCAAACTTTATCAGCATTACCGGTTCAACTCTAACATCAAAGTGGTTTGGAGATGCTGAAAAGCTGACCAAAGCTCTCTTCTCTTTTGCCAGCAAGCTTGCTCCCGTCATTATATTTGTCGATGAGGTTGATAGTTTGCTTGGTGCTCGTGGTGGTTCTTTTGAGCATGAGGCAACTAGAAGAATGAGAAATGAGTTCATGGCAGCTTGGGATGGATTGCGATCCAAAGACAGTCAAAGAATTCTTATTCTCGGAGCCACAAATCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCAGATGTTGAAAATCGCAAGAAGATTTTGAGTATCTTTCTTGCTCAAGAGAATCTAGAACCTGGTTTCCAATTTGATAAACTTTCAGAGGCAACCGAGGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCTGCATATAGGCCTGTCCAGGAACTATTAGAAGAAGAAACCAAGGACAGCAAAAGTGATTTATCTCCACCTTTAAGGCGACTTAATTTAGATGACTTTATTCAATCAAAAGCCAAGGTAAAAAACTCAAGTTATTGTGATTTTGTTATTCCTTCCCATTTAGTAGGTGCCATCTTTGAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

994

Amino Acids

111.93

Weight (kDa)

5.68

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	618 - 675	5.5e-07	Domain of unknown function (DUF7751)
AAA	PF00004	756 - 886	8.4e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	910 - 947	1e-10	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT3G19740
fragaria_vesca	FvH4_4g36860 FvH4_4g36860 FvH4_4g36860
malus_domestica	MD13G1006500.v1.1 MD16G1001500.v1.1
prunus_persica	Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1
pyrus_communis	pycom13g00540 pycom16g00410
rosa_chinensis	RchiOBHm_Chr4g0446611
rosa_laevigata	RLG00000005645
rosa_multiflora	Rmu_sc0036387.1_g000001 Rmu_ssc0000144.1_g000003
rosa_roxburghii	Rroxscaffold_5G00387010
rosa_rugosa	Rorug04G0372800 Rorug04G0372900 Rorug04G0373000 Rorug04G0373100
rosa_samantha	Rh4AG434400 Rh4BG443600 Rh4CG460900 Rh4DG442400
rosa_wichuraiana	Rw4G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2983
AccB1I	GGYRCC	1 cut(s)	2966
AccB7I	CCANNNNNTGG	1 cut(s)	1616
AccBSI	CCGCTC	1 cut(s)	1218
AccII	CGCG	2 cut(s)	184, 745
AciI	CCGC	2 cut(s)	1218, 2251
AclWI	GGATC	1 cut(s)	2550
AcoI	YGGCCR	1 cut(s)	2600
AcsI	RAATTY	5 cut(s)	1512, 1592, 1612, 2068, 2574
AcuI	CTGAAG	4 cut(s)	674, 846, 999, 1136
AfaI	GTAC	3 cut(s)	859, 1755, 2124
AfiI	CCNNNNNNNGG	6 cut(s)	1399, 1616, 2086, 2261, 2291, 2598
AflII	CTTAAG	2 cut(s)	1646, 1667
AflIII	ACRYGT	2 cut(s)	236, 1156
AgeI	ACCGGT	1 cut(s)	2354
AhlI	ACTAGT	2 cut(s)	914, 2197
AjnI	CCWGG	5 cut(s)	700, 2128, 2284, 2722, 2817
AjuI	GAANNNNNNNTTGG	2 cut(s)	2396, 2428
AloI	GAACNNNNNNTCC	2 cut(s)	2712, 2744
Alw21I	GWGCWC	4 cut(s)	700, 739, 2167, 2482
Alw26I	GTCTC	4 cut(s)	167, 551, 1349, 2055
AlwI	GGATC	1 cut(s)	2550
AlwNI	CAGNNNCTG	5 cut(s)	122, 707, 1073, 1535, 2330
Ama87I	CYCGRG	1 cut(s)	1838
AoxI	GGCC	7 cut(s)	380, 1145, 1175, 1389, 2252, 2600, 2810
ApeKI	GCWGC	9 cut(s)	611, 614, 983, 1073, 1633, 1990, 2537, 2798, 2801
ApoI	RAATTY	5 cut(s)	1512, 1592, 1612, 2068, 2574
AsiGI	ACCGGT	1 cut(s)	2354
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	5 cut(s)	1145, 1390, 1532, 1864, 2279
AsuHPI	GGTGA	8 cut(s)	465, 818, 1136, 1144, 1225, 1991, 2144, 2188
AvaI	CYCGRG	1 cut(s)	1838
AvaII	GGWCC	3 cut(s)	1532, 1864, 2279
BanI	GGYRCC	1 cut(s)	2966
BanII	GRGCYC	1 cut(s)	739
BarI	GAAGNNNNNNTAC	2 cut(s)	1737, 1769
BauI	CACGAG	4 cut(s)	767, 1998, 2235, 2481
BbsI	GAAGAC	3 cut(s)	1299, 2224, 2303
Bbv12I	GWGCWC	4 cut(s)	700, 739, 2167, 2482
BbvI	GCAGC	9 cut(s)	598, 601, 995, 1060, 1620, 2002, 2549, 2785, 2788
BccI	CCATC	9 cut(s)	33, 275, 317, 836, 1018, 1781, 1880, 2540, 2978
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	1979, 2013
BciT130I	CCWGG	5 cut(s)	702, 2130, 2286, 2724, 2819
BciVI	GTATCC	2 cut(s)	1317, 2756
BcoDI	GTCTC	4 cut(s)	167, 551, 1349, 2055
BcuI	ACTAGT	2 cut(s)	914, 2197
BfaI	CTAG	9 cut(s)	12, 144, 366, 486, 915, 1461, 2198, 2511, 2717
BfmI	CTRYAG	2 cut(s)	265, 1988
BfrI	CTTAAG	2 cut(s)	1646, 1667
BfuI	GTATCC	2 cut(s)	1317, 2756
BglII	AGATCT	1 cut(s)	748
BlpI	GCTNAGC	1 cut(s)	1077
Bme1390I	CCNGG	5 cut(s)	702, 2130, 2286, 2724, 2819
Bme18I	GGWCC	3 cut(s)	1532, 1864, 2279
BmeT110I	CYCGRG	1 cut(s)	1838
BmgT120I	GGNCC	5 cut(s)	1145, 1390, 1532, 1864, 2279
BmiI	GGNNCC	2 cut(s)	2590, 2968
BmrFI	CCNGG	5 cut(s)	702, 2130, 2286, 2724, 2819
BmrI	ACTGGG	1 cut(s)	2301
BmsI	GCATC	6 cut(s)	33, 130, 379, 880, 2377, 2608
BmuI	ACTGGG	1 cut(s)	2301
BpiI	GAAGAC	3 cut(s)	1299, 2224, 2303
BplI	GAGNNNNNCTC	4 cut(s)	2216, 2248, 2750, 2782
BpmI	CTGGAG	2 cut(s)	684, 2189
Bpu1102I	GCTNAGC	1 cut(s)	1077
BpuEI	CTTGAG	3 cut(s)	974, 2691, 2911
Bsa29I	ATCGAT	1 cut(s)	576
BsaAI	YACGTR	3 cut(s)	237, 1157, 1397
BsaBI	GATNNNNATC	1 cut(s)	2554
BsaJI	CCNNGG	4 cut(s)	530, 2757, 2841, 2913
BsaWI	WCCGGW	1 cut(s)	2354
Bsc4I	CCNNNNNNNGG	6 cut(s)	1399, 1616, 2086, 2261, 2291, 2598
Bse118I	RCCGGY	1 cut(s)	2354
Bse1I	ACTGG	4 cut(s)	314, 1313, 1522, 2296
Bse3DI	GCAATG	1 cut(s)	1389
Bse8I	GATNNNNATC	1 cut(s)	2554
BseBI	CCWGG	5 cut(s)	702, 2130, 2286, 2724, 2819
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	4 cut(s)	530, 2757, 2841, 2913
BseGI	GGATG	6 cut(s)	48, 844, 1699, 1732, 2095, 2551
BseJI	GATNNNNATC	1 cut(s)	2554
BseLI	CCNNNNNNNGG	6 cut(s)	1399, 1616, 2086, 2261, 2291, 2598
BseMI	GCAATG	1 cut(s)	1389
BseMII	CTCAG	9 cut(s)	150, 285, 699, 1044, 1068, 1356, 1373, 1650, 1905
BseNI	ACTGG	4 cut(s)	314, 1313, 1522, 2296
BseRI	GAGGAG	3 cut(s)	866, 1295, 2186
BseXI	GCAGC	9 cut(s)	598, 601, 995, 1060, 1620, 2002, 2549, 2785, 2788
BseYI	CCCAGC	2 cut(s)	1929, 2330
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	184, 745
BshFI	GGCC	7 cut(s)	382, 1147, 1177, 1391, 2254, 2602, 2812
BshNI	GGYRCC	1 cut(s)	2966
BshTI	ACCGGT	1 cut(s)	2354
BshVI	ATCGAT	1 cut(s)	576
BsiHKAI	GWGCWC	4 cut(s)	700, 739, 2167, 2482
BsiHKCI	CYCGRG	1 cut(s)	1838
BsiSI	CCGG	1 cut(s)	2355
BslFI	GGGAC	2 cut(s)	120, 1677
BslI	CCNNNNNNNGG	6 cut(s)	1399, 1616, 2086, 2261, 2291, 2598
BsmAI	GTCTC	4 cut(s)	167, 551, 1349, 2055
BsmBI	CGTCTC	2 cut(s)	167, 551
BsmFI	GGGAC	2 cut(s)	120, 1677
BsnI	GGCC	7 cut(s)	382, 1147, 1177, 1391, 2254, 2602, 2812
BsoBI	CYCGRG	1 cut(s)	1838
Bsp1286I	GDGCHC	4 cut(s)	700, 739, 2167, 2482
Bsp143I	GATC	7 cut(s)	415, 748, 1126, 1222, 1682, 1893, 2555
Bsp1720I	GCTNAGC	1 cut(s)	1077
Bsp19I	CCATGG	1 cut(s)	530
Bsp68I	TCGCGA	1 cut(s)	184
BspACI	CCGC	2 cut(s)	1218, 2251
BspANI	GGCC	7 cut(s)	382, 1147, 1177, 1391, 2254, 2602, 2812
BspCNI	CTCAG	9 cut(s)	149, 284, 700, 1045, 1069, 1357, 1372, 1651, 1906
BspDI	ATCGAT	1 cut(s)	576
BspFNI	CGCG	2 cut(s)	184, 745
BspLI	GGNNCC	2 cut(s)	2590, 2968
BspMAI	CTGCAG	1 cut(s)	1992
BspPI	GGATC	1 cut(s)	2550
BspQI	GCTCTTC	1 cut(s)	1715
BspT107I	GGYRCC	1 cut(s)	2966
BspTI	CTTAAG	2 cut(s)	1646, 1667
BsrBI	CCGCTC	1 cut(s)	1218
BsrDI	GCAATG	1 cut(s)	1389
BsrFI	RCCGGY	1 cut(s)	2354
BsrI	ACTGG	4 cut(s)	314, 1313, 1522, 2296
BssAI	RCCGGY	1 cut(s)	2354
BssECI	CCNNGG	4 cut(s)	530, 2757, 2841, 2913
BssMI	GATC	7 cut(s)	415, 748, 1126, 1222, 1682, 1893, 2555
BssSI	CACGAG	4 cut(s)	767, 1998, 2235, 2481
BssT1I	CCWWGG	3 cut(s)	530, 2841, 2913
Bst2BI	CACGAG	4 cut(s)	767, 1998, 2235, 2481
Bst2UI	CCWGG	5 cut(s)	702, 2130, 2286, 2724, 2819
Bst4CI	ACNGT	7 cut(s)	54, 118, 214, 309, 547, 719, 2567
Bst6I	CTCTTC	4 cut(s)	1450, 1715, 1743, 2417
BstAFI	CTTAAG	2 cut(s)	1646, 1667
BstBAI	YACGTR	3 cut(s)	237, 1157, 1397
BstC8I	GCNNGC	6 cut(s)	969, 1302, 1410, 2425, 2429, 2433
BstDSI	CCRYGG	1 cut(s)	530
BstENI	CCTNNNNNAGG	3 cut(s)	1397, 2084, 2259
BstF5I	GGATG	6 cut(s)	48, 844, 1699, 1732, 2095, 2551
BstFNI	CGCG	2 cut(s)	184, 745
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	7 cut(s)	418, 751, 1129, 1225, 1685, 1896, 2558
BstMAI	GTCTC	4 cut(s)	167, 551, 1349, 2055
BstMBI	GATC	7 cut(s)	415, 748, 1126, 1222, 1682, 1893, 2555
BstMWI	GCNNNNNNNGC	6 cut(s)	267, 276, 983, 1388, 1414, 2327
BstNI	CCWGG	5 cut(s)	702, 2130, 2286, 2724, 2819
BstNSI	RCATGY	4 cut(s)	971, 1331, 1349, 1412
BstSCI	CCNGG	5 cut(s)	700, 2128, 2284, 2722, 2817
BstSFI	CTRYAG	2 cut(s)	265, 1988
BstUI	CGCG	2 cut(s)	184, 745
BstV1I	GCAGC	9 cut(s)	598, 601, 995, 1060, 1620, 2002, 2549, 2785, 2788
BstV2I	GAAGAC	3 cut(s)	1299, 2224, 2303
BstX2I	RGATCY	1 cut(s)	748
BstXI	CCANNNNNNTGG	1 cut(s)	1320
BstYI	RGATCY	1 cut(s)	748
Bsu15I	ATCGAT	1 cut(s)	576
BsuI	GTATCC	2 cut(s)	1317, 2756
BsuRI	GGCC	7 cut(s)	382, 1147, 1177, 1391, 2254, 2602, 2812
BsuTUI	ATCGAT	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	530
BtgZI	GCGATG	2 cut(s)	165, 294
BtsCI	GGATG	6 cut(s)	48, 844, 1699, 1732, 2095, 2551
BtsI	GCAGTG	2 cut(s)	787, 2779
BtsIMutI	CAGTG	6 cut(s)	210, 321, 705, 787, 1112, 2779
BtuMI	TCGCGA	1 cut(s)	184
Cac8I	GCNNGC	6 cut(s)	969, 1302, 1410, 2425, 2429, 2433
CaiI	CAGNNNCTG	5 cut(s)	122, 707, 1073, 1535, 2330
CfoI	GCGC	1 cut(s)	745
Cfr10I	RCCGGY	1 cut(s)	2354
Cfr13I	GGNCC	5 cut(s)	1145, 1390, 1532, 1864, 2279
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	1 cut(s)	1640
CsiI	ACCWGGT	1 cut(s)	2722
Csp6I	GTAC	3 cut(s)	858, 1754, 2123
CspAI	ACCGGT	1 cut(s)	2354
CviQI	GTAC	3 cut(s)	858, 1754, 2123
DpnI	GATC	7 cut(s)	417, 750, 1128, 1224, 1684, 1895, 2557
DpnII	GATC	7 cut(s)	415, 748, 1126, 1222, 1682, 1893, 2555
EaeI	YGGCCR	1 cut(s)	2600
Eam1104I	CTCTTC	4 cut(s)	1450, 1715, 1743, 2417
EarI	CTCTTC	4 cut(s)	1450, 1715, 1743, 2417
Ecl136II	GAGCTC	1 cut(s)	737
Eco130I	CCWWGG	3 cut(s)	530, 2841, 2913
Eco147I	AGGCCT	3 cut(s)	382, 1177, 2812
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	3 cut(s)	1532, 1864, 2279
Eco53kI	GAGCTC	1 cut(s)	737
Eco57I	CTGAAG	4 cut(s)	674, 846, 999, 1136
Eco88I	CYCGRG	1 cut(s)	1838
EcoICRI	GAGCTC	1 cut(s)	737
EcoNI	CCTNNNNNAGG	3 cut(s)	1397, 2084, 2259
EcoO109I	RGGNCCY	2 cut(s)	1390, 1532
EcoRI	GAATTC	1 cut(s)	2574
EcoRII	CCWGG	5 cut(s)	700, 2128, 2284, 2722, 2817
EcoT14I	CCWWGG	3 cut(s)	530, 2841, 2913
EcoT22I	ATGCAT	1 cut(s)	1862
EcoT38I	GRGCYC	1 cut(s)	739
ErhI	CCWWGG	3 cut(s)	530, 2841, 2913
Esp3I	CGTCTC	2 cut(s)	167, 551
FalI	AAGNNNNNCTT	2 cut(s)	1740, 1772
FaqI	GGGAC	2 cut(s)	120, 1677
FokI	GGATG	6 cut(s)	55, 851, 1706, 1719, 2102, 2558
FriOI	GRGCYC	1 cut(s)	739
FspBI	CTAG	9 cut(s)	12, 144, 366, 486, 915, 1461, 2198, 2511, 2717
GlaI	GCGC	1 cut(s)	744
GsaI	CCCAGC	2 cut(s)	1933, 2334
GsuI	CTGGAG	2 cut(s)	684, 2189
HaeIII	GGCC	7 cut(s)	382, 1147, 1177, 1391, 2254, 2602, 2812
HapII	CCGG	1 cut(s)	2355
HgaI	GACGC	1 cut(s)	1640
HhaI	GCGC	1 cut(s)	745
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HincII	GTYRAC	1 cut(s)	1193
HindII	GTYRAC	1 cut(s)	1193
HindIII	AAGCTT	2 cut(s)	995, 2429
HpaII	CCGG	1 cut(s)	2355
HphI	GGTGA	8 cut(s)	465, 818, 1136, 1144, 1225, 1991, 2144, 2188
Hpy166II	GTNNAC	5 cut(s)	305, 639, 858, 1193, 1553
Hpy8I	GTNNAC	5 cut(s)	305, 639, 858, 1193, 1553
Hpy99I	CGWCG	1 cut(s)	2634
HpyCH4III	ACNGT	7 cut(s)	54, 118, 214, 309, 547, 719, 2567
HpyCH4IV	ACGT	8 cut(s)	78, 109, 236, 560, 1156, 1195, 1396, 2026
HpyF10VI	GCNNNNNNNGC	6 cut(s)	267, 276, 983, 1388, 1414, 2327
HpySE526I	ACGT	8 cut(s)	78, 109, 236, 560, 1156, 1195, 1396, 2026
HspAI	GCGC	1 cut(s)	743
Kzo9I	GATC	7 cut(s)	415, 748, 1126, 1222, 1682, 1893, 2555
LguI	GCTCTTC	1 cut(s)	1715
LmnI	GCTCC	7 cut(s)	409, 703, 796, 1809, 2035, 2440, 2588
Lsp1109I	GCAGC	9 cut(s)	598, 601, 995, 1060, 1620, 2002, 2549, 2785, 2788
LweI	GCATC	6 cut(s)	33, 130, 379, 880, 2377, 2608
MabI	ACCWGGT	1 cut(s)	2722
MaeI	CTAG	9 cut(s)	12, 144, 366, 486, 915, 1461, 2198, 2511, 2717
MaeII	ACGT	8 cut(s)	78, 109, 236, 560, 1156, 1195, 1396, 2026
MaeIII	GTNAC	5 cut(s)	255, 309, 437, 1979, 2102
MalI	GATC	7 cut(s)	417, 750, 1128, 1224, 1684, 1895, 2557
MbiI	CCGCTC	1 cut(s)	1218
MboI	GATC	7 cut(s)	415, 748, 1126, 1222, 1682, 1893, 2555
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	4 cut(s)	700, 739, 2167, 2482
MlyI	GAGTC	6 cut(s)	833, 875, 1064, 1351, 1436, 1583
Mph1103I	ATGCAT	1 cut(s)	1862
MseI	TTAA	7 cut(s)	432, 1544, 1647, 1668, 1974, 2873, 2883
MslI	CAYNNNNRTG	2 cut(s)	1350, 2374
MspCI	CTTAAG	2 cut(s)	1646, 1667
MspI	CCGG	1 cut(s)	2355
MspR9I	CCNGG	5 cut(s)	702, 2130, 2286, 2724, 2819
MvaI	CCWGG	5 cut(s)	702, 2130, 2286, 2724, 2819
MvnI	CGCG	2 cut(s)	184, 745
MwoI	GCNNNNNNNGC	6 cut(s)	267, 276, 983, 1388, 1414, 2327
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	7 cut(s)	415, 748, 1126, 1222, 1682, 1893, 2555
NlaIV	GGNNCC	2 cut(s)	2590, 2968
NmuCI	GTSAC	2 cut(s)	437, 1979
NruI	TCGCGA	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	1862
NspI	RCATGY	4 cut(s)	971, 1331, 1349, 1412
PaeI	GCATGC	2 cut(s)	971, 1412
PaeR7I	CTCGAG	1 cut(s)	1838
PceI	AGGCCT	3 cut(s)	382, 1177, 2812
PciSI	GCTCTTC	1 cut(s)	1715
PfeI	GAWTC	7 cut(s)	170, 470, 830, 1049, 1100, 1568, 2713
PflFI	GACNNNGTC	1 cut(s)	1493
PflMI	CCANNNNNTGG	1 cut(s)	1616
PfoI	TCCNGGA	2 cut(s)	2284, 2817
PinAI	ACCGGT	1 cut(s)	2354
PleI	GAGTC	6 cut(s)	832, 874, 1063, 1351, 1436, 1582
PpsI	GAGTC	6 cut(s)	832, 874, 1063, 1351, 1436, 1582
Ppu21I	YACGTR	3 cut(s)	237, 1157, 1397
PpuMI	RGGWCCY	1 cut(s)	1532
PsiI	TTATAA	1 cut(s)	2983
Psp124BI	GAGCTC	1 cut(s)	739
Psp5II	RGGWCCY	1 cut(s)	1532
Psp6I	CCWGG	5 cut(s)	700, 2128, 2284, 2722, 2817
PspFI	CCCAGC	2 cut(s)	1929, 2330
PspGI	CCWGG	5 cut(s)	700, 2128, 2284, 2722, 2817
PspN4I	GGNNCC	2 cut(s)	2590, 2968
PspPI	GGNCC	5 cut(s)	1145, 1390, 1532, 1864, 2279
PspPPI	RGGWCCY	1 cut(s)	1532
PstI	CTGCAG	1 cut(s)	1992
PstNI	CAGNNNCTG	5 cut(s)	122, 707, 1073, 1535, 2330
PsuI	RGATCY	1 cut(s)	748
PsyI	GACNNNGTC	1 cut(s)	1493
RruI	TCGCGA	1 cut(s)	184
RsaI	GTAC	3 cut(s)	859, 1755, 2124
RsaNI	GTAC	3 cut(s)	858, 1754, 2123
RseI	CAYNNNNRTG	2 cut(s)	1350, 2374
SacI	GAGCTC	1 cut(s)	739
SapI	GCTCTTC	1 cut(s)	1715
SaqAI	TTAA	7 cut(s)	432, 1544, 1647, 1668, 1974, 2873, 2883
Sau3AI	GATC	7 cut(s)	415, 748, 1126, 1222, 1682, 1893, 2555
Sau96I	GGNCC	5 cut(s)	1145, 1390, 1532, 1864, 2279
SchI	GAGTC	6 cut(s)	833, 875, 1064, 1351, 1436, 1583
ScrFI	CCNGG	5 cut(s)	702, 2130, 2286, 2724, 2819
SduI	GDGCHC	4 cut(s)	700, 739, 2167, 2482
SexAI	ACCWGGT	1 cut(s)	2722
SfaNI	GCATC	6 cut(s)	33, 130, 379, 880, 2377, 2608
SfcI	CTRYAG	2 cut(s)	265, 1988
Sfr274I	CTCGAG	1 cut(s)	1838
SinI	GGWCC	3 cut(s)	1532, 1864, 2279
SlaI	CTCGAG	1 cut(s)	1838
SmiMI	CAYNNNNRTG	2 cut(s)	1350, 2374
SmlI	CTYRAG	6 cut(s)	989, 1646, 1667, 1838, 2706, 2926
SmoI	CTYRAG	6 cut(s)	989, 1646, 1667, 1838, 2706, 2926
SpeI	ACTAGT	2 cut(s)	914, 2197
SphI	GCATGC	2 cut(s)	971, 1412
SseBI	AGGCCT	3 cut(s)	382, 1177, 2812
SsiI	CCGC	2 cut(s)	1218, 2251
SspMI	CTAG	9 cut(s)	12, 144, 366, 486, 915, 1461, 2198, 2511, 2717
SstI	GAGCTC	1 cut(s)	739
StuI	AGGCCT	3 cut(s)	382, 1177, 2812
StyD4I	CCNGG	5 cut(s)	700, 2128, 2284, 2722, 2817
StyI	CCWWGG	3 cut(s)	530, 2841, 2913
TaaI	ACNGT	7 cut(s)	54, 118, 214, 309, 547, 719, 2567
TaiI	ACGT	8 cut(s)	81, 112, 239, 563, 1159, 1198, 1399, 2029
TaqI	TCGA	5 cut(s)	576, 1225, 1341, 1839, 2454
TatI	WGTACW	1 cut(s)	857
TauI	GCSGC	1 cut(s)	2254
TfiI	GAWTC	7 cut(s)	170, 470, 830, 1049, 1100, 1568, 2713
Tru1I	TTAA	7 cut(s)	432, 1544, 1647, 1668, 1974, 2873, 2883
Tru9I	TTAA	7 cut(s)	432, 1544, 1647, 1668, 1974, 2873, 2883
TscAI	CASTG	6 cut(s)	217, 321, 712, 787, 1119, 2779
TseFI	GTSAC	2 cut(s)	437, 1979
TseI	GCWGC	9 cut(s)	611, 614, 983, 1073, 1633, 1990, 2537, 2798, 2801
Tsp45I	GTSAC	2 cut(s)	437, 1979
TspGWI	ACGGA	3 cut(s)	437, 836, 1960
TspRI	CASTG	6 cut(s)	217, 321, 712, 787, 1119, 2779
Tth111I	GACNNNGTC	1 cut(s)	1493
Van91I	CCANNNNNTGG	1 cut(s)	1616
Vha464I	CTTAAG	2 cut(s)	1646, 1667
VpaK11BI	GGWCC	3 cut(s)	1532, 1864, 2279
XagI	CCTNNNNNAGG	3 cut(s)	1397, 2084, 2259
XapI	RAATTY	5 cut(s)	1512, 1592, 1612, 2068, 2574
XbaI	TCTAGA	1 cut(s)	2716
XceI	RCATGY	4 cut(s)	971, 1331, 1349, 1412
XcmI	CCANNNNNNNNNTGG	2 cut(s)	595, 1317
XhoI	CTCGAG	1 cut(s)	1838
XspI	CTAG	9 cut(s)	12, 144, 366, 486, 915, 1461, 2198, 2511, 2717
Zsp2I	ATGCAT	1 cut(s)	1862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.