Rorug04G0372900

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004154
Physical Location & Seq
Reverse (-)
54428701 .. 54430192
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0372900.1

Sequence Viewer

Length: 1080 bp
ATGGATTTAGCTACTAATAATAGTAGTTCTCGTGAGCTTCTTCAAGCTCAAGTCCATGTTTGGAATCACATATTGAAGTTCATAAACTCCATGGCACTAAAATGTGCAATTCAGTTAGGCATCCCAGATACCATTCACAACCACGGCCAACCCATTACCCTCTCCAACCTTATTTCTAGACTCAATGTCCACCCTTCTAAATCTCGCTTCATCTATCGCCTCATGCGCATTTTAGTCCAATGTGGATTTTTTGTCAAACATAACGACGTTCATCAAGAAGTAGTCTATTCCCTAACACCATCTTCCGAGCTTCTCCTCAATGACCAGCCTTTGAAAATGACACCGTTCTTGCTTCTCCAACTCGACCCAATGTTGATTGCCCCGTGGCACTTGTTGGGCTCGTGGTTCCGAAACCACGGATCCACCCCATTTGAGATGACATATGATATGTCGTTCTTCGATTTGGGGGCTCATGAACCAAGGTTTGGTAACATGTTTGACGAAGCAATGGTTGCCGACTCGGAGCTTGTTTCGAGGGTGGTGATTAAAGAGTGTCAAGGAGTGTTTGAGGGTTTGAATTCAATTTTTGATGTCGGAGGTGGTAGAGGAACTATGGCTTTTGCCATTGCCAATGCATTTCCACACATAAAATGCACTGTATTGGATCTCCCACATGTCATTGATAACTTGAAAGGGACCAACAACTTGGATTTTGTTGTGGGAGACATGTTTGAGAAAATACCCCCAGCAAATGCAATTTTACTCAAGTGGATTCTGCATGACTGGAATGATGAAGAAAGCGTGAAGATATTGAAGAGGTGTAGAGAAGCAGTTTCGATCAGCAAAAGTGACAGAGGAAAGGTTATCATTATAGACATCGTTGTAACCGTAGATAACAAGGAGATGAATAACAGGTCAACTGAAACACAACTGTTATGGGACATGTTGATGATGGTGAATCTCACTGGAAGAGAACGGACTGAAAAAGAGTGGGAGAAGCTGTTTTTGGCTGCAGGATTCACTTACTATAAGATTTCACATACACTGGGAGTTAGGTCTCTTATTGAGGTTTACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

359

Amino Acids

40.93

Weight (kDa)

6.16

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 21 - 107 1.7e-20 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 129 - 340 1.6e-54 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 485
AclWI GGATC 3 cut(s) 414, 427, 672
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 577
AfiI CCNNNNNNNGG 1 cut(s) 485
AflIII ACRYGT 4 cut(s) 492, 673, 726, 942
AgsI TTSAA 7 cut(s) 44, 76, 334, 577, 582, 691, 814
AhdI GACNNNNNGTC 1 cut(s) 185
AjuI GAANNNNNNNTTGG 4 cut(s) 468, 500, 989, 1021
AluBI AGCT 6 cut(s) 11, 37, 47, 310, 526, 1000
AluI AGCT 6 cut(s) 11, 37, 47, 310, 526, 1000
Alw26I GTCTC 2 cut(s) 717, 1062
AlwI GGATC 3 cut(s) 414, 427, 672
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 1 cut(s) 577
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 696
AsuHPI GGTGA 2 cut(s) 553, 967
AvaII GGWCC 1 cut(s) 696
BamHI GGATCC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 401, 472
BauI CACGAG 2 cut(s) 30, 400
BbvI GCAGC 1 cut(s) 997
BccI CCATC 2 cut(s) 307, 946
BceAI ACGGC 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 717, 1062
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 1011
BisI GCNGC 1 cut(s) 1011
BlsI GCNGC 1 cut(s) 1012
Bme18I GGWCC 1 cut(s) 696
BmeRI GACNNNNNGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 696
BmiI GGNNCC 3 cut(s) 407, 421, 697
BmrI ACTGGG 1 cut(s) 1055
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 1055
BpuEI CTTGAG 2 cut(s) 33, 749
BsaI GGTCTC 1 cut(s) 1062
BsaJI CCNNGG 5 cut(s) 90, 142, 383, 415, 479
BsaXI ACNNNNNCTCC 2 cut(s) 986, 1016
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 3 cut(s) 788, 970, 1050
Bse3DI GCAATG 2 cut(s) 513, 624
BseDI CCNNGG 5 cut(s) 90, 142, 383, 415, 479
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 2 cut(s) 513, 624
BseNI ACTGG 3 cut(s) 788, 970, 1050
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 997
BseYI CCCAGC 1 cut(s) 745
BshFI GGCC 1 cut(s) 147
BslFI GGGAC 2 cut(s) 709, 953
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 2 cut(s) 717, 1062
BsmFI GGGAC 2 cut(s) 709, 953
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 1062
Bsp1286I GDGCHC 2 cut(s) 401, 472
Bsp143I GATC 3 cut(s) 419, 664, 837
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 1 cut(s) 147
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 3 cut(s) 407, 421, 697
BspMAI CTGCAG 1 cut(s) 1015
BspPI GGATC 3 cut(s) 414, 427, 672
BspTNI GGTCTC 1 cut(s) 1062
BsrDI GCAATG 2 cut(s) 513, 624
BsrI ACTGG 3 cut(s) 788, 970, 1050
BssECI CCNNGG 5 cut(s) 90, 142, 383, 415, 479
BssMI GATC 3 cut(s) 419, 664, 837
BssSI CACGAG 2 cut(s) 30, 400
BssT1I CCWWGG 2 cut(s) 90, 479
Bst2BI CACGAG 2 cut(s) 30, 400
Bst4CI ACNGT 4 cut(s) 345, 658, 889, 933
Bst6I CTCTTC 2 cut(s) 809, 964
BstAPI GCANNNNNTGC 1 cut(s) 512
BstDSI CCRYGG 4 cut(s) 90, 142, 383, 415
BstF5I GGATG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 3 cut(s) 422, 667, 840
BstMAI GTCTC 2 cut(s) 717, 1062
BstMBI GATC 3 cut(s) 419, 664, 837
BstMWI GCNNNNNNNGC 2 cut(s) 225, 512
BstNSI RCATGY 4 cut(s) 496, 677, 730, 946
BstSFI CTRYAG 1 cut(s) 1011
BstV1I GCAGC 1 cut(s) 997
BstX2I RGATCY 2 cut(s) 419, 664
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 2 cut(s) 419, 664
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 4 cut(s) 90, 142, 383, 415
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 654, 963, 1043
CciI TCATGA 1 cut(s) 472
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 696
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 9 cut(s) 56, 91, 223, 473, 493, 674, 727, 779, 943
DpnI GATC 3 cut(s) 421, 666, 839
DpnII GATC 3 cut(s) 419, 664, 837
DriI GACNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 809, 964
Eam1105I GACNNNNNGTC 1 cut(s) 185
EarI CTCTTC 2 cut(s) 809, 964
Eco130I CCWWGG 2 cut(s) 90, 479
Eco24I GRGCYC 2 cut(s) 401, 472
Eco31I GGTCTC 1 cut(s) 1062
Eco47I GGWCC 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 577
EcoT14I CCWWGG 2 cut(s) 90, 479
EcoT22I ATGCAT 1 cut(s) 637
EcoT38I GRGCYC 2 cut(s) 401, 472
ErhI CCWWGG 2 cut(s) 90, 479
FaeI CATG 9 cut(s) 59, 94, 226, 476, 496, 677, 730, 782, 946
FaqI GGGAC 2 cut(s) 709, 953
FatI CATG 9 cut(s) 55, 90, 222, 472, 492, 673, 726, 778, 942
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 1011
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 401, 472
Fsp4HI GCNGC 1 cut(s) 1011
FspAI RTGCGCAY 1 cut(s) 227
FspBI CTAG 1 cut(s) 177
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 1011
GsaI CCCAGC 1 cut(s) 749
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 228
Hin1II CATG 9 cut(s) 59, 94, 226, 476, 496, 677, 730, 782, 946
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 918
HindII GTYRAC 1 cut(s) 918
HinfI GANTC 6 cut(s) 64, 180, 518, 772, 958, 1017
HphI GGTGA 2 cut(s) 553, 967
Hpy166II GTNNAC 3 cut(s) 190, 918, 1072
Hpy188I TCNGA 4 cut(s) 307, 410, 523, 596
Hpy188III TCNNGA 4 cut(s) 32, 177, 275, 473
Hpy8I GTNNAC 3 cut(s) 190, 918, 1072
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 4 cut(s) 345, 658, 889, 933
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 6 cut(s) 107, 635, 654, 755, 778, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 512
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 9 cut(s) 59, 94, 226, 476, 496, 677, 730, 782, 946
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 3 cut(s) 419, 664, 837
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 8 cut(s) 138, 338, 759, 769, 898, 951, 999, 1031
Lsp1109I GCAGC 1 cut(s) 997
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 3 cut(s) 488, 848, 883
MalI GATC 3 cut(s) 421, 666, 839
MboI GATC 3 cut(s) 419, 664, 837
MboII GAAGA 7 cut(s) 32, 294, 448, 806, 817, 826, 981
MflI RGATCY 2 cut(s) 419, 664
MhlI GDGCHC 2 cut(s) 401, 472
MluCI AATT 4 cut(s) 108, 577, 582, 756
MlyI GAGTC 2 cut(s) 174, 512
MmeI TCCRAC 3 cut(s) 189, 382, 574
Mph1103I ATGCAT 1 cut(s) 637
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 2 cut(s) 100, 947
MwoI GCNNNNNNNGC 2 cut(s) 225, 512
NcoI CCATGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 442
NdeII GATC 3 cut(s) 419, 664, 837
NlaIII CATG 9 cut(s) 59, 94, 226, 476, 496, 677, 730, 782, 946
NlaIV GGNNCC 3 cut(s) 407, 421, 697
NmuCI GTSAC 1 cut(s) 848
NsbI TGCGCA 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 4 cut(s) 496, 677, 730, 946
PagI TCATGA 1 cut(s) 472
PciI ACATGT 4 cut(s) 492, 673, 726, 942
PcsI WCGNNNNNNNCGW 1 cut(s) 885
PfeI GAWTC 4 cut(s) 64, 772, 958, 1017
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 1 cut(s) 1012
PleI GAGTC 2 cut(s) 174, 512
PpsI GAGTC 2 cut(s) 174, 512
PscI ACATGT 4 cut(s) 492, 673, 726, 942
PspFI CCCAGC 1 cut(s) 745
PspN4I GGNNCC 3 cut(s) 407, 421, 697
PspPI GGNCC 1 cut(s) 696
PstI CTGCAG 1 cut(s) 1015
PsuI RGATCY 2 cut(s) 419, 664
RseI CAYNNNNRTG 2 cut(s) 100, 947
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 1 cut(s) 1011
Sau3AI GATC 3 cut(s) 419, 664, 837
Sau96I GGNCC 1 cut(s) 696
SchI GAGTC 2 cut(s) 174, 512
SduI GDGCHC 2 cut(s) 401, 472
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 1 cut(s) 696
SmiMI CAYNNNNRTG 2 cut(s) 100, 947
SmlI CTYRAG 2 cut(s) 48, 764
SmoI CTYRAG 2 cut(s) 48, 764
Sse9I AATT 4 cut(s) 108, 577, 582, 756
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 2 cut(s) 90, 479
TaaI ACNGT 4 cut(s) 345, 658, 889, 933
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 363, 459, 533, 836
TasI AATT 4 cut(s) 108, 577, 582, 756
TfiI GAWTC 4 cut(s) 64, 772, 958, 1017
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 3 cut(s) 661, 970, 1050
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 1 cut(s) 1010
Tsp45I GTSAC 1 cut(s) 848
TspDTI ATGAA 6 cut(s) 70, 199, 260, 489, 807, 920
TspGWI ACGGA 2 cut(s) 432, 991
TspRI CASTG 3 cut(s) 661, 970, 1050
Van91I CCANNNNNTGG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 696
XapI RAATTY 1 cut(s) 577
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 4 cut(s) 496, 677, 730, 946
XspI CTAG 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.