Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004154

Physical Location & Seq

Genomic Coordinates Forward (+)

54431034 .. 54431210

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0373000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTTCTGGGCAGCAACCCGACCTGCAACTGCAGGTTTTCTGGGCGGTGCTGCAACGACGTCGCCGGCGACTCCACCGACTGCAGACCTCTCCGCCCGACCCCTGGCGTCCTTCAGGCAACCTCCGCCGCTCGGTCGCGCCCCGAGCCGAGCTGCAGCAGCGCCGTCCGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

58

Amino Acids

5.75

Weight (kDa)

12.0

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT1G50140 AT3G19740
fragaria_vesca	FvH4_4g36860 FvH4_4g36860 FvH4_4g36860
malus_domestica	MD13G1006500.v1.1 MD16G1001500.v1.1
prunus_persica	Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1 Prupe.1G346700_v2.0.a1
pyrus_communis	pycom13g00540 pycom16g00410
rosa_chinensis	RchiOBHm_Chr4g0446611
rosa_laevigata	RLG00000005645
rosa_multiflora	Rmu_sc0036387.1_g000001 Rmu_ssc0000144.1_g000003
rosa_roxburghii	Rroxscaffold_5G00387010
rosa_rugosa	Rorug04G0372800 Rorug04G0372900 Rorug04G0373000 Rorug04G0373100
rosa_samantha	Rh4AG434400 Rh4BG443600 Rh4CG460900 Rh4DG442400
rosa_wichuraiana	Rw4G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
Acc36I	ACCTGC	2 cut(s)	23, 31
AccBSI	CCGCTC	1 cut(s)	130
AccII	CGCG	1 cut(s)	138
AciI	CCGC	5 cut(s)	45, 93, 125, 128, 168
AcuI	CTGAAG	1 cut(s)	97
AcyI	GRCGYC	2 cut(s)	59, 107
AfiI	CCNNNNNNNGG	2 cut(s)	103, 131
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	142
ApeKI	GCWGC	5 cut(s)	11, 50, 152, 155, 158
AspLEI	GCGC	2 cut(s)	140, 163
AvaI	CYCGRG	1 cut(s)	142
BbvI	GCAGC	5 cut(s)	23, 37, 139, 167, 170
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BciT130I	CCWGG	1 cut(s)	104
BfmI	CTRYAG	3 cut(s)	30, 81, 153
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	2 cut(s)	23, 31
BisI	GCNGC	6 cut(s)	12, 51, 128, 153, 156, 159
BlsI	GCNGC	6 cut(s)	13, 52, 129, 154, 157, 160
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	104
BsaHI	GRCGYC	2 cut(s)	59, 107
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 131
Bse118I	RCCGGY	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	103, 131
BseXI	GCAGC	5 cut(s)	23, 37, 139, 167, 170
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	103, 131
BsoBI	CYCGRG	1 cut(s)	142
BspACI	CCGC	5 cut(s)	45, 93, 125, 128, 168
BspFNI	CGCG	1 cut(s)	138
BspMAI	CTGCAG	3 cut(s)	34, 85, 157
BspMI	ACCTGC	2 cut(s)	23, 31
BsrBI	CCGCTC	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	102
BssNI	GRCGYC	2 cut(s)	59, 107
Bst2UI	CCWGG	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	59, 107
BstC8I	GCNNGC	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	140, 163
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 144, 158, 167
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	3 cut(s)	30, 81, 153
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	5 cut(s)	23, 37, 139, 167, 170
BveI	ACCTGC	2 cut(s)	23, 31
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	2 cut(s)	140, 163
Cfr10I	RCCGGY	1 cut(s)	64
CseI	GACGC	1 cut(s)	96
CviJI	RGCY	2 cut(s)	147, 152
CviKI_1	RGCY	2 cut(s)	147, 152
EciI	GGCGGA	2 cut(s)	82, 114
Eco57I	CTGAAG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	102
Fnu4HI	GCNGC	6 cut(s)	12, 51, 128, 153, 156, 159
Fsp4HI	GCNGC	6 cut(s)	12, 51, 128, 153, 156, 159
GlaI	GCGC	2 cut(s)	139, 162
GluI	GCNGC	6 cut(s)	12, 51, 128, 153, 156, 159
HaeII	RGCGCY	1 cut(s)	164
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	140, 163
Hin1I	GRCGYC	2 cut(s)	59, 107
Hin6I	GCGC	2 cut(s)	138, 161
HinP1I	GCGC	2 cut(s)	138, 161
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	65
Hpy99I	CGWCG	2 cut(s)	61, 64
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	26, 32, 53, 83, 155
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 144, 158, 167
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	2 cut(s)	59, 107
HspAI	GCGC	2 cut(s)	138, 161
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
LpnPI	CCDG	7 cut(s)	18, 26, 36, 78, 89, 100, 116
Lsp1109I	GCAGC	5 cut(s)	23, 37, 139, 167, 170
MaeII	ACGT	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	98, 132
MreI	CGCCGGCG	1 cut(s)	64
MroNI	GCCGGC	1 cut(s)	64
MseI	TTAA	1 cut(s)	175
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	4 cut(s)	124, 144, 158, 167
NaeI	GCCGGC	1 cut(s)	66
NgoMIV	GCCGGC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PdiI	GCCGGC	1 cut(s)	66
PkrI	GCNGC	6 cut(s)	13, 52, 129, 154, 157, 160
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PstI	CTGCAG	3 cut(s)	34, 85, 157
SaqAI	TTAA	1 cut(s)	175
SatI	GCNGC	6 cut(s)	12, 51, 128, 153, 156, 159
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	25, 37, 62, 90, 124, 154
SfcI	CTRYAG	3 cut(s)	30, 81, 153
SgrAI	CRCCGGYG	1 cut(s)	64
SsiI	CCGC	5 cut(s)	45, 93, 125, 128, 168
StyD4I	CCNGG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	122
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	175
Tru9I	TTAA	1 cut(s)	175
TseI	GCWGC	5 cut(s)	11, 50, 152, 155, 158
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.