Rorug04G0373100

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004154
Physical Location & Seq
Reverse (-)
54435667 .. 54437590
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0373100.1

Sequence Viewer

Length: 1173 bp
ATGTATGTAACAAGGCCTCTGTCTATGTATAGAAGGTCTCCCGATTCACTATCACTACCAACGCCGGAAGGTCCAAATTCCGGTTATCTTGTACTACACGATGAAGAATCAGATGAGACTACCTGTTTCGGATGTTGCAAAGATCCTCAGGTGCAAGGCTTGCCTTTCCCTCAGAACAAGAATCTCACAGTTGAATATTCCTCAGATGATGATGATGTTGCCTTCATTCCAGTTCTTGATAAGCCTTTATCTGCCAATACATACCATGTGATACGCCGGAATGGGAGACACAGAGGGAAAGTGTACACAAATTCAAAGGAAGAGGACATGGCAGATTGCTGTTTTGGCAAAGCTGTTCAAGATGTAAAACCAAAGCCATTGGATCCATCAGACATATATCAACAAATTGAGATAATTCCAAGGAAGCACCGCGGCTACTTTACTGCCAAGGCTGTTGCTTCAGATGGGTTTCCTCCTTCCTTTTTGAGGAGAAAAGATTGGACAGTGACCATGAACACACCCCATCATTATCAACTAGGTGAAGCTCCAGGACTCAACGCTTCGAAGCGATCAGGCCTTCCTGGTTTCGACTTTCCACTGTCCAAAGATTGTTCTGAGGCTATGGTAGTTGGCAAGTGGCACTGTCCTTTCTTGTTTATCAAGGAAGAGGGACTGGAGTTGAAGCACCAAATGAAGCACTACATGTTCTATGAAATGAGACTGGAGCAAAGATGGGAGAGAATTTTCGACAAATACAATGAAGGAAAGAGCAACAATGCTAATGCTGTGTTTGTGGATGCATTTGTTCAAAGAGAGGCGGTATTTATTGCTGGAAGAGAAGCTTATTCCGATAATCTAGACAGAGTTCATATCGTCGATGATTTCATGTGGTTTAAGAGCTCTGATGGTGGGGGAGGAGAAAGGAGTGTAGGGTTGAGCATGAAAATTATTGAGAGAATGACGTGGGAGCAAGAAAGAGTTGGATGGGTTGGTGGGGAGAAAAGAAAAGTGCGAGTGGAGAAAACCGAAAAGTTTGGGGGAACTGATGGTTGGAATAGATTTTCTTGTTATGTGTTGGTGGAGAGGTTTGTGTTGAAGATAATGGATGAAAGCTTAGCACTATTGGCATATGATTTCAGGCACACTCACCAGATTAGGTGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

390

Amino Acids

45.03

Weight (kDa)

6.48

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 115 1.2e-37 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 432
AciI CCGC 3 cut(s) 430, 432, 818
AclWI GGATC 3 cut(s) 137, 377, 390
AcsI RAATTY 3 cut(s) 76, 310, 741
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 93, 305
AfiI CCNNNNNNNGG 2 cut(s) 80, 486
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 6 cut(s) 194, 315, 359, 682, 809, 1096
AjiI CACGTC 1 cut(s) 963
AjnI CCWGG 2 cut(s) 547, 580
AjuI GAANNNNNNNTTGG 2 cut(s) 1033, 1065
AluBI AGCT 5 cut(s) 353, 545, 842, 900, 1113
AluI AGCT 5 cut(s) 353, 545, 842, 900, 1113
Alw21I GWGCWC 1 cut(s) 902
Alw26I GTCTC 4 cut(s) 42, 110, 280, 712
AlwI GGATC 3 cut(s) 137, 377, 390
AoxI GGCC 2 cut(s) 14, 574
ApoI RAATTY 3 cut(s) 76, 310, 741
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 551, 1139
AsuII TTCGAA 1 cut(s) 563
AvaII GGWCC 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 147
BamHI GGATCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 902
BccI CCATC 7 cut(s) 394, 458, 531, 726, 899, 978, 1040
BciT130I CCWGG 2 cut(s) 549, 582
BcoDI GTCTC 4 cut(s) 42, 110, 280, 712
BfaI CTAG 2 cut(s) 536, 857
BisI GCNGC 1 cut(s) 433
BlpI GCTNAGC 1 cut(s) 1114
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 2 cut(s) 549, 582
Bme18I GGWCC 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 963
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 549, 582
BmsI GCATC 1 cut(s) 787
BpmI CTGGAG 3 cut(s) 531, 695, 743
Bpu1102I GCTNAGC 1 cut(s) 1114
Bpu14I TTCGAA 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 419, 430, 447
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 486
Bse1I ACTGG 3 cut(s) 230, 678, 726
Bse21I CCTNAGG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 549, 582
BseDI CCNNGG 3 cut(s) 419, 430, 447
BseGI GGATG 4 cut(s) 137, 802, 989, 1111
BseLI CCNNNNNNNGG 2 cut(s) 80, 486
BseMII CTCAG 4 cut(s) 161, 185, 216, 606
BseNI ACTGG 3 cut(s) 230, 678, 726
BseRI GAGGAG 2 cut(s) 502, 930
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 2 cut(s) 16, 576
BsiHKAI GWGCWC 1 cut(s) 902
BsiSI CCGG 3 cut(s) 65, 81, 277
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 2 cut(s) 80, 486
BsmAI GTCTC 4 cut(s) 42, 110, 280, 712
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 2 cut(s) 16, 576
Bso31I GGTCTC 1 cut(s) 42
Bsp119I TTCGAA 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 902
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 3 cut(s) 142, 382, 569
Bsp1720I GCTNAGC 1 cut(s) 1114
BspACI CCGC 3 cut(s) 430, 432, 818
BspANI GGCC 2 cut(s) 16, 576
BspCNI CTCAG 4 cut(s) 160, 184, 215, 607
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 3 cut(s) 137, 377, 390
BspT104I TTCGAA 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 3 cut(s) 230, 678, 726
BssECI CCNNGG 3 cut(s) 419, 430, 447
BssMI GATC 3 cut(s) 142, 382, 569
BssT1I CCWWGG 2 cut(s) 419, 447
Bst2UI CCWGG 2 cut(s) 549, 582
Bst4CI ACNGT 4 cut(s) 190, 505, 600, 644
Bst6I CTCTTC 3 cut(s) 315, 660, 829
BstAPI GCANNNNNTGC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 5 cut(s) 147, 171, 202, 615, 1114
BstDSI CCRYGG 1 cut(s) 430
BstENI CCTNNNNNAGG 1 cut(s) 484
BstF5I GGATG 4 cut(s) 137, 802, 989, 1111
BstFNI CGCG 1 cut(s) 432
BstKTI GATC 3 cut(s) 145, 385, 572
BstMAI GTCTC 4 cut(s) 42, 110, 280, 712
BstMBI GATC 3 cut(s) 142, 382, 569
BstMWI GCNNNNNNNGC 3 cut(s) 160, 345, 1124
BstNI CCWGG 2 cut(s) 549, 582
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 2 cut(s) 547, 580
BstUI CGCG 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 142, 382
BstYI RGATCY 2 cut(s) 142, 382
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 16, 576
BtgI CCRYGG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 963
BtsCI GGATG 4 cut(s) 137, 802, 989, 1111
BtsIMutI CAGTG 3 cut(s) 510, 596, 640
Cac8I GCNNGC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 71
Cfr42I CCGCGG 1 cut(s) 433
Csp6I GTAC 2 cut(s) 92, 304
CviAII CATG 6 cut(s) 266, 328, 511, 703, 886, 940
CviQI GTAC 2 cut(s) 92, 304
DdeI CTNAG 5 cut(s) 147, 171, 202, 615, 1114
DpnI GATC 3 cut(s) 144, 384, 571
DpnII GATC 3 cut(s) 142, 382, 569
Eam1104I CTCTTC 3 cut(s) 315, 660, 829
EarI CTCTTC 3 cut(s) 315, 660, 829
Ecl136II GAGCTC 1 cut(s) 900
Eco130I CCWWGG 2 cut(s) 419, 447
Eco147I AGGCCT 2 cut(s) 16, 576
Eco24I GRGCYC 1 cut(s) 902
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 900
Eco57I CTGAAG 1 cut(s) 444
Eco81I CCTNAGG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 900
EcoNI CCTNNNNNAGG 1 cut(s) 484
EcoRII CCWGG 2 cut(s) 547, 580
EcoT14I CCWWGG 2 cut(s) 419, 447
EcoT22I ATGCAT 1 cut(s) 802
EcoT38I GRGCYC 1 cut(s) 902
ErhI CCWWGG 2 cut(s) 419, 447
FaeI CATG 6 cut(s) 269, 331, 514, 706, 889, 943
FalI AAGNNNNNCTT 2 cut(s) 826, 858
FaqI GGGAC 1 cut(s) 684
FatI CATG 6 cut(s) 265, 327, 510, 702, 885, 939
FauNDI CATATG 1 cut(s) 1129
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 4 cut(s) 144, 809, 996, 1118
FriOI GRGCYC 1 cut(s) 902
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 2 cut(s) 536, 857
GluI GCNGC 1 cut(s) 433
GsuI CTGGAG 3 cut(s) 531, 695, 743
HaeIII GGCC 2 cut(s) 16, 576
HapII CCGG 3 cut(s) 65, 81, 277
Hin1II CATG 6 cut(s) 269, 331, 514, 706, 889, 943
HindIII AAGCTT 2 cut(s) 840, 1111
HinfI GANTC 4 cut(s) 44, 107, 181, 552
HpaII CCGG 3 cut(s) 65, 81, 277
HphI GGTGA 2 cut(s) 551, 1139
Hpy166II GTNNAC 2 cut(s) 304, 306
Hpy188I TCNGA 9 cut(s) 112, 131, 174, 205, 391, 463, 616, 850, 904
Hpy188III TCNNGA 4 cut(s) 41, 236, 359, 857
Hpy8I GTNNAC 2 cut(s) 304, 306
Hpy99I CGWCG 1 cut(s) 878
HpyAV CCTTC 6 cut(s) 27, 62, 232, 486, 587, 755
HpyCH4III ACNGT 4 cut(s) 190, 505, 600, 644
HpyCH4IV ACGT 1 cut(s) 962
HpyCH4V TGCA 4 cut(s) 138, 154, 800, 1161
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 345, 1124
HpyF3I CTNAG 5 cut(s) 147, 171, 202, 615, 1114
HpySE526I ACGT 1 cut(s) 962
Hsp92II CATG 6 cut(s) 269, 331, 514, 706, 889, 943
KspI CCGCGG 1 cut(s) 433
Kzo9I GATC 3 cut(s) 142, 382, 569
LmnI GCTCC 3 cut(s) 550, 724, 967
LweI GCATC 1 cut(s) 787
MaeI CTAG 2 cut(s) 536, 857
MaeII ACGT 1 cut(s) 962
MaeIII GTNAC 2 cut(s) 7, 505
MalI GATC 3 cut(s) 144, 384, 571
MboI GATC 3 cut(s) 142, 382, 569
MboII GAAGA 5 cut(s) 116, 332, 677, 846, 1108
MflI RGATCY 2 cut(s) 142, 382
MhlI GDGCHC 1 cut(s) 902
MluCI AATT 6 cut(s) 76, 310, 405, 414, 741, 945
MlyI GAGTC 1 cut(s) 546
MmeI TCCRAC 2 cut(s) 961, 1031
Mph1103I ATGCAT 1 cut(s) 802
MseI TTAA 1 cut(s) 894
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 3 cut(s) 65, 81, 277
MspR9I CCNGG 2 cut(s) 549, 582
MvaI CCWGG 2 cut(s) 549, 582
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 160, 345, 1124
NdeI CATATG 1 cut(s) 1129
NdeII GATC 3 cut(s) 142, 382, 569
NlaIII CATG 6 cut(s) 269, 331, 514, 706, 889, 943
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 802
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 1 cut(s) 563
PceI AGGCCT 2 cut(s) 16, 576
PciI ACATGT 1 cut(s) 702
PfeI GAWTC 3 cut(s) 44, 107, 181
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 1 cut(s) 434
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
PscI ACATGT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 902
Psp6I CCWGG 2 cut(s) 547, 580
PspGI CCWGG 2 cut(s) 547, 580
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 2 cut(s) 142, 382
RsaI GTAC 2 cut(s) 93, 305
RsaNI GTAC 2 cut(s) 92, 304
SacI GAGCTC 1 cut(s) 902
SacII CCGCGG 1 cut(s) 433
SaqAI TTAA 1 cut(s) 894
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 3 cut(s) 142, 382, 569
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 546
ScrFI CCNGG 2 cut(s) 549, 582
SduI GDGCHC 1 cut(s) 902
SfaNI GCATC 1 cut(s) 787
Sfr303I CCGCGG 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 563
SgrBI CCGCGG 1 cut(s) 433
SinI GGWCC 1 cut(s) 71
Sse9I AATT 6 cut(s) 76, 310, 405, 414, 741, 945
SseBI AGGCCT 2 cut(s) 16, 576
SsiI CCGC 3 cut(s) 430, 432, 818
SspI AATATT 1 cut(s) 197
SspMI CTAG 2 cut(s) 536, 857
SstI GAGCTC 1 cut(s) 902
StuI AGGCCT 2 cut(s) 16, 576
StyD4I CCNGG 2 cut(s) 547, 580
StyI CCWWGG 2 cut(s) 419, 447
TaaI ACNGT 4 cut(s) 190, 505, 600, 644
TaiI ACGT 1 cut(s) 965
TaqI TCGA 4 cut(s) 563, 588, 747, 876
TasI AATT 6 cut(s) 76, 310, 405, 414, 741, 945
TatI WGTACW 2 cut(s) 91, 303
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 3 cut(s) 44, 107, 181
Tru1I TTAA 1 cut(s) 894
Tru9I TTAA 1 cut(s) 894
TscAI CASTG 3 cut(s) 510, 603, 647
TseFI GTSAC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 505
TspRI CASTG 3 cut(s) 510, 603, 647
VpaK11BI GGWCC 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 484
XapI RAATTY 3 cut(s) 76, 310, 741
XbaI TCTAGA 1 cut(s) 856
XceI RCATGY 1 cut(s) 706
XspI CTAG 2 cut(s) 536, 857
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.