Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007978

Physical Location & Seq

Genomic Coordinates Forward (+)

504452 .. 506414

Gene Structure 1963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1008200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGCCACACGTCTCCGATTTTCAAATACACATTAATGGTCAGCAAATATTCTTCGTCAGCGAGGAGATTTTGTCAACATATTCGGCAAGGTTGACGAAGATCATCAGGCAAGAAAGGAGAGGAACCCAGATCAAGAATTCCGGTATCAGAATCGATGACTTTCCCGGAGGCCCTGACGGGTTTGAGTTGGTTTCTCGATTCTGTTACAACAATGGGAGAATCACGCTCACAGTTTCAAACGTGTGCCTCCTCCACTGCTCTGCAATCTTCCTCGGCATGACCGAGAAGCTTTCACCCCGCAATTTGTTGCAGAAAACAAATACTTTTCTCGACGGACTTTTCGAGTGGTCGTTGAAAGACGTACTAGCCTGCCTGAAGAGCTGCCACTCGTTCTTCGACTGCGCAGATTCGTCCGGTCTTTTAGACAAACTCATTACTGCACTGCTAACAAAGATCGCTCAGAGTTCTGACGTAAGCAACCTCATTGCCTCGTCGCCTTCGTCTTCTCCGGAAACTGCATCTGGGTTCAGACTCTCTTCCAGCACCCCAAAATCGATCAGGCCGAGCTCGTCCAGCAGAGCGTGGTGGTTCGACGACGTGGCCGTTCTGCCACCAAATATCATTGCAAAACTCCTCCAGAATTTAGGTGCTTACGGACCCAAAAACAACAGCCTGATCCTCACCAGATTCCTCCTCCACTACTTGAAAATCTCAGCCCAGAGAAAGCCCGGGAACTCGAAATGCGAGCTCGGGAGGCTCGCAGACACGGCGGTTCACGGCGTGATCTTGGTGGGCAAAAAGGTGTTTTCATGCAGAGCTCTGTTCTGGGTTCTGAGGATTGTGTCTGGATTTGGAATTAGCAAAGAGTACAAAGTTGGGTTGGAGAGGTTGATTGGTGGTATGATCGATGAAGCCACGCTGGATGATTTGCTGGTGATGTTAAGAGTGTTTGTTAATGGCGAAGGCGTTTCAGTGCAGAGGTTGAAGAAAGCTGGGAGATTGGTTGATAAGTACTTGGGTGAAATATCACCTGACCAGAATCTCAAGGTTTCTAAGTTTCTGGGAGTTGCAGAGAGCTTGCCTGATTGTGCTAGGGACTGCTTTGATGCGGCCTACAGAGCCATTGATATCTATCTTGAGGCTCATCCAAATCTTTCGTTCGAAGAGCGGGCGAGATTATGCAGATGCCTAAATTATGAGAAGCTGAGCTTAGAAGCATGTAAAGAGCTTGCCCAGAATCCTAAGATCCCACCAAGGGTTGCCATTCAAGCACTTATTTCTCAAAACTCCAAAATAACACCAACACAGCCAAAACTGGTTGTATATCGGAGTCCGCATTCTCATTTCCTTTCATGTTCCGATATGGTTTGGTACAAGAACGGCGGTGTTGAAGAAGACGAATCGACGTCGTTAAACTTGCAGAGGATGCAATGGAGGGTGGTGGAGTTGGAGAAACTGTGCAGGCAAATGAAGAGGCAAATGTCAAGGATGGTAAAACATAATGTCTTGACGACTATCACTCCAGCCCACACTAGAGCTTTTCCCAGACTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

519

Amino Acids

57.98

Weight (kDa)

9.21

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	195 - 313	9.9e-14	NPH3 family
NPH3	PF03000	324 - 407	2.3e-33	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19850
fragaria_vesca	FvH4_4g36690 FvH4_4g36690
malus_domestica	MD13G1008200.v1.1
prunus_persica	Prupe.1G344900_v2.0.a1 Prupe.1G344900_v2.0.a1
pyrus_communis	pycom05g06860 pycom07g12620 pycom13g00670 pycom16g00540 pycom16g00550 pycom16g04040
rosa_chinensis	RchiOBHm_Chr4g0446401
rosa_laevigata	RLG00000005664
rosa_multiflora	Rmu_sc0008360.1_g000004 Rmu_sc0010778.1_g000006 Rmu_sc0018598.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386840
rosa_rugosa	Rorug04G0371100
rosa_samantha	Rh4AG432600 Rh4BG441800 Rh4CG459100 Rh4DG440500
rosa_wichuraiana	Rw4G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1409
Acc16I	TGCGCA	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	1168
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	6 cut(s)	298, 770, 1109, 1168, 1334, 1383
AclWI	GGATC	2 cut(s)	670, 1240
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	2 cut(s)	136, 640
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	1406
AdeI	CACNNNGTG	1 cut(s)	781
AfaI	GTAC	4 cut(s)	363, 869, 1013, 1373
AfiI	CCNNNNNNNGG	1 cut(s)	1255
AflIII	ACRYGT	2 cut(s)	7, 240
AgsI	TTSAA	7 cut(s)	23, 237, 355, 706, 985, 1268, 1391
AjiI	CACGTC	2 cut(s)	10, 598
Alw21I	GWGCWC	3 cut(s)	569, 750, 820
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	2 cut(s)	670, 1240
Ama87I	CYCGRG	2 cut(s)	728, 749
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	4 cut(s)	169, 560, 600, 1110
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	2 cut(s)	136, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AseI	ATTAAT	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	170, 656
AsuC2I	CCSGG	3 cut(s)	165, 729, 730
AsuHPI	GGTGA	5 cut(s)	285, 673, 946, 1020, 1031
AsuII	TTCGAA	1 cut(s)	1161
AvaI	CYCGRG	2 cut(s)	728, 749
AvaII	GGWCC	1 cut(s)	656
BanII	GRGCYC	3 cut(s)	569, 750, 820
BbsI	GAAGAC	2 cut(s)	495, 1401
Bbv12I	GWGCWC	3 cut(s)	569, 750, 820
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	1483
BceAI	ACGGC	4 cut(s)	587, 783, 793, 1396
BcnI	CCSGG	3 cut(s)	165, 729, 730
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	3 cut(s)	365, 1092, 1533
BfmI	CTRYAG	1 cut(s)	1114
BisI	GCNGC	2 cut(s)	382, 1110
BlpI	GCTNAGC	1 cut(s)	1205
BlsI	GCNGC	2 cut(s)	383, 1111
BmcAI	AGTACT	1 cut(s)	1013
Bme1390I	CCNGG	3 cut(s)	165, 729, 730
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	2 cut(s)	728, 749
BmgBI	CACGTC	2 cut(s)	10, 598
BmgT120I	GGNCC	2 cut(s)	170, 656
BmiI	GGNNCC	2 cut(s)	124, 658
BmrFI	CCNGG	3 cut(s)	165, 729, 730
BmsI	GCATC	4 cut(s)	527, 1096, 1175, 1416
BpiI	GAAGAC	2 cut(s)	495, 1401
BpmI	CTGGAG	2 cut(s)	620, 1506
Bpu1102I	GCTNAGC	1 cut(s)	1205
Bpu14I	TTCGAA	1 cut(s)	1161
BpuEI	CTTGAG	2 cut(s)	1028, 1157
BpuMI	CCSGG	3 cut(s)	165, 729, 730
Bsa29I	ATCGAT	3 cut(s)	153, 554, 906
BsaBI	GATNNNNATC	1 cut(s)	1131
BsaHI	GRCGYC	1 cut(s)	1406
BsaJI	CCNNGG	3 cut(s)	271, 728, 1253
BsaWI	WCCGGW	3 cut(s)	140, 413, 508
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 1442, 1472, 1504, 1534
Bsc4I	CCNNNNNNNGG	1 cut(s)	1255
Bse1I	ACTGG	1 cut(s)	1320
Bse3DI	GCAATG	3 cut(s)	483, 621, 1436
Bse8I	GATNNNNATC	1 cut(s)	1131
BseAI	TCCGGA	1 cut(s)	508
BseCI	ATCGAT	3 cut(s)	153, 554, 906
BseDI	CCNNGG	3 cut(s)	271, 728, 1253
BseGI	GGATG	4 cut(s)	928, 1144, 1431, 1494
BseJI	GATNNNNATC	1 cut(s)	1131
BseLI	CCNNNNNNNGG	1 cut(s)	1255
BseMI	GCAATG	3 cut(s)	483, 621, 1436
BseMII	CTCAG	4 cut(s)	473, 726, 824, 1196
BseNI	ACTGG	1 cut(s)	1320
BseRI	GAGGAG	4 cut(s)	77, 239, 623, 683
BseXI	GCAGC	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	992
BsgI	GTGCAG	3 cut(s)	423, 995, 1480
BshFI	GGCC	4 cut(s)	171, 562, 602, 1112
BshVI	ATCGAT	3 cut(s)	153, 554, 906
BsiHKAI	GWGCWC	3 cut(s)	569, 750, 820
BsiHKCI	CYCGRG	2 cut(s)	728, 749
BsiSI	CCGG	5 cut(s)	141, 165, 414, 509, 729
BslFI	GGGAC	1 cut(s)	1109
BslI	CCNNNNNNNGG	1 cut(s)	1255
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	1109
BsmI	GAATGC	1 cut(s)	1336
BsnI	GGCC	4 cut(s)	171, 562, 602, 1112
BsoBI	CYCGRG	2 cut(s)	728, 749
Bsp119I	TTCGAA	1 cut(s)	1161
Bsp1286I	GDGCHC	3 cut(s)	569, 750, 820
Bsp13I	TCCGGA	1 cut(s)	508
Bsp143I	GATC	8 cut(s)	99, 129, 453, 555, 675, 783, 903, 1245
Bsp1720I	GCTNAGC	1 cut(s)	1205
BspACI	CCGC	6 cut(s)	298, 770, 1109, 1168, 1334, 1383
BspANI	GGCC	4 cut(s)	171, 562, 602, 1112
BspCNI	CTCAG	4 cut(s)	472, 725, 825, 1197
BspDI	ATCGAT	3 cut(s)	153, 554, 906
BspEI	TCCGGA	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	124, 658
BspPI	GGATC	2 cut(s)	670, 1240
BspQI	GCTCTTC	2 cut(s)	371, 1158
BspT104I	TTCGAA	1 cut(s)	1161
BsrBI	CCGCTC	1 cut(s)	1168
BsrDI	GCAATG	3 cut(s)	483, 621, 1436
BsrI	ACTGG	1 cut(s)	1320
BssECI	CCNNGG	3 cut(s)	271, 728, 1253
BssMI	GATC	8 cut(s)	99, 129, 453, 555, 675, 783, 903, 1245
BssNI	GRCGYC	1 cut(s)	1406
BssT1I	CCWWGG	1 cut(s)	1253
Bst4CI	ACNGT	2 cut(s)	232, 1458
Bst6I	CTCTTC	4 cut(s)	371, 541, 1158, 1466
BstACI	GRCGYC	1 cut(s)	1406
BstAPI	GCANNNNNTGC	1 cut(s)	1426
BstBI	TTCGAA	1 cut(s)	1161
BstC8I	GCNNGC	7 cut(s)	370, 746, 759, 1079, 1170, 1230, 1463
BstDEI	CTNAG	7 cut(s)	459, 712, 833, 1053, 1205, 1210, 1242
BstF5I	GGATG	4 cut(s)	928, 1144, 1431, 1494
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	8 cut(s)	102, 132, 456, 558, 678, 786, 906, 1248
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	8 cut(s)	99, 129, 453, 555, 675, 783, 903, 1245
BstMWI	GCNNNNNNNGC	7 cut(s)	378, 573, 754, 767, 1118, 1268, 1426
BstNSI	RCATGY	1 cut(s)	1221
BstSCI	CCNGG	3 cut(s)	163, 727, 728
BstSFI	CTRYAG	1 cut(s)	1114
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	2 cut(s)	495, 1401
BstX2I	RGATCY	1 cut(s)	1245
BstYI	RGATCY	1 cut(s)	1245
Bsu15I	ATCGAT	3 cut(s)	153, 554, 906
BsuRI	GGCC	4 cut(s)	171, 562, 602, 1112
BsuTUI	ATCGAT	3 cut(s)	153, 554, 906
BtrI	CACGTC	2 cut(s)	10, 598
BtsCI	GGATG	4 cut(s)	928, 1144, 1431, 1494
BtsI	GCAGTG	2 cut(s)	253, 440
BtsIMutI	CAGTG	3 cut(s)	253, 440, 978
Cac8I	GCNNGC	7 cut(s)	370, 746, 759, 1079, 1170, 1230, 1463
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	170, 656
Cfr9I	CCCGGG	1 cut(s)	728
ClaI	ATCGAT	3 cut(s)	153, 554, 906
Csp6I	GTAC	4 cut(s)	362, 868, 1012, 1372
CviAII	CATG	4 cut(s)	277, 810, 1218, 1353
CviQI	GTAC	4 cut(s)	362, 868, 1012, 1372
DdeI	CTNAG	7 cut(s)	459, 712, 833, 1053, 1205, 1210, 1242
DpnI	GATC	8 cut(s)	101, 131, 455, 557, 677, 785, 905, 1247
DpnII	GATC	8 cut(s)	99, 129, 453, 555, 675, 783, 903, 1245
DraIII	CACNNNGTG	1 cut(s)	781
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	4 cut(s)	371, 541, 1158, 1466
EarI	CTCTTC	4 cut(s)	371, 541, 1158, 1466
Ecl136II	GAGCTC	3 cut(s)	567, 748, 818
Eco130I	CCWWGG	1 cut(s)	1253
Eco24I	GRGCYC	3 cut(s)	569, 750, 820
Eco32I	GATATC	1 cut(s)	1129
Eco47I	GGWCC	1 cut(s)	656
Eco53kI	GAGCTC	3 cut(s)	567, 748, 818
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	2 cut(s)	728, 749
EcoICRI	GAGCTC	3 cut(s)	567, 748, 818
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	1129
EcoT14I	CCWWGG	1 cut(s)	1253
EcoT38I	GRGCYC	3 cut(s)	569, 750, 820
ErhI	CCWWGG	1 cut(s)	1253
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	4 cut(s)	280, 813, 1221, 1356
FalI	AAGNNNNNCTT	2 cut(s)	1193, 1225
FaqI	GGGAC	1 cut(s)	1109
FatI	CATG	4 cut(s)	276, 809, 1217, 1352
FauI	CCCGC	2 cut(s)	305, 1161
Fnu4HI	GCNGC	2 cut(s)	382, 1110
FokI	GGATG	4 cut(s)	935, 1131, 1438, 1501
FriOI	GRGCYC	3 cut(s)	569, 750, 820
Fsp4HI	GCNGC	2 cut(s)	382, 1110
FspBI	CTAG	3 cut(s)	365, 1092, 1533
FspI	TGCGCA	1 cut(s)	403
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	2 cut(s)	382, 1110
GsaI	CCCAGC	1 cut(s)	996
GsuI	CTGGAG	2 cut(s)	620, 1506
HaeIII	GGCC	4 cut(s)	171, 562, 602, 1112
HapII	CCGG	5 cut(s)	141, 165, 414, 509, 729
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	1406
Hin1II	CATG	4 cut(s)	280, 813, 1221, 1356
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	2 cut(s)	75, 93
HindII	GTYRAC	2 cut(s)	75, 93
HindIII	AAGCTT	1 cut(s)	287
HpaII	CCGG	5 cut(s)	141, 165, 414, 509, 729
HphI	GGTGA	5 cut(s)	285, 673, 946, 1020, 1031
Hpy166II	GTNNAC	3 cut(s)	75, 93, 775
Hpy188I	TCNGA	8 cut(s)	16, 149, 462, 469, 530, 834, 1329, 1360
Hpy188III	TCNNGA	9 cut(s)	133, 195, 329, 509, 637, 751, 846, 1136, 1507
Hpy8I	GTNNAC	3 cut(s)	75, 93, 775
Hpy99I	CGWCG	6 cut(s)	335, 496, 596, 599, 1408, 1411
HpyAV	CCTTC	2 cut(s)	507, 956
HpyCH4III	ACNGT	2 cut(s)	232, 1458
HpyCH4IV	ACGT	6 cut(s)	9, 240, 360, 471, 597, 1406
HpyF10VI	GCNNNNNNNGC	7 cut(s)	378, 573, 754, 767, 1118, 1268, 1426
HpyF3I	CTNAG	7 cut(s)	459, 712, 833, 1053, 1205, 1210, 1242
HpySE526I	ACGT	6 cut(s)	9, 240, 360, 471, 597, 1406
Hsp92I	GRCGYC	1 cut(s)	1406
Hsp92II	CATG	4 cut(s)	280, 813, 1221, 1356
HspAI	GCGC	1 cut(s)	402
Kpn2I	TCCGGA	1 cut(s)	508
Kzo9I	GATC	8 cut(s)	99, 129, 453, 555, 675, 783, 903, 1245
LguI	GCTCTTC	2 cut(s)	371, 1158
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	4 cut(s)	527, 1096, 1175, 1416
MaeI	CTAG	3 cut(s)	365, 1092, 1533
MaeII	ACGT	6 cut(s)	9, 240, 360, 471, 597, 1406
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	8 cut(s)	101, 131, 455, 557, 677, 785, 905, 1247
MbiI	CCGCTC	1 cut(s)	1168
MboI	GATC	8 cut(s)	99, 129, 453, 555, 675, 783, 903, 1245
MflI	RGATCY	1 cut(s)	1245
MhlI	GDGCHC	3 cut(s)	569, 750, 820
MluCI	AATT	5 cut(s)	136, 301, 640, 855, 1192
MlyI	GAGTC	2 cut(s)	525, 1339
MmeI	TCCRAC	2 cut(s)	861, 1428
MroI	TCCGGA	1 cut(s)	508
MseI	TTAA	4 cut(s)	33, 941, 954, 1412
MslI	CAYNNNNRTG	1 cut(s)	33
MspI	CCGG	5 cut(s)	141, 165, 414, 509, 729
MspR9I	CCNGG	3 cut(s)	165, 729, 730
Mva1269I	GAATGC	1 cut(s)	1336
MwoI	GCNNNNNNNGC	7 cut(s)	378, 573, 754, 767, 1118, 1268, 1426
NciI	CCSGG	3 cut(s)	165, 729, 730
NdeII	GATC	8 cut(s)	99, 129, 453, 555, 675, 783, 903, 1245
NlaIII	CATG	4 cut(s)	280, 813, 1221, 1356
NlaIV	GGNNCC	2 cut(s)	124, 658
NmeAIII	GCCGAG	2 cut(s)	252, 588
NsbI	TGCGCA	1 cut(s)	403
NspI	RCATGY	1 cut(s)	1221
NspV	TTCGAA	1 cut(s)	1161
PciSI	GCTCTTC	2 cut(s)	371, 1158
PcsI	WCGNNNNNNNCGW	5 cut(s)	279, 339, 497, 560, 600
PctI	GAATGC	1 cut(s)	1336
PfeI	GAWTC	8 cut(s)	150, 198, 219, 407, 687, 1039, 1237, 1400
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	383, 1111
PleI	GAGTC	2 cut(s)	525, 1338
PpsI	GAGTC	2 cut(s)	525, 1338
PshBI	ATTAAT	1 cut(s)	33
Psp124BI	GAGCTC	3 cut(s)	569, 750, 820
PspFI	CCCAGC	1 cut(s)	992
PspN4I	GGNNCC	2 cut(s)	124, 658
PspPI	GGNCC	2 cut(s)	170, 656
PsuI	RGATCY	1 cut(s)	1245
RsaI	GTAC	4 cut(s)	363, 869, 1013, 1373
RsaNI	GTAC	4 cut(s)	362, 868, 1012, 1372
RseI	CAYNNNNRTG	1 cut(s)	33
SacI	GAGCTC	3 cut(s)	569, 750, 820
SapI	GCTCTTC	2 cut(s)	371, 1158
SaqAI	TTAA	4 cut(s)	33, 941, 954, 1412
SatI	GCNGC	2 cut(s)	382, 1110
Sau3AI	GATC	8 cut(s)	99, 129, 453, 555, 675, 783, 903, 1245
Sau96I	GGNCC	2 cut(s)	170, 656
ScaI	AGTACT	1 cut(s)	1013
SchI	GAGTC	2 cut(s)	525, 1339
ScrFI	CCNGG	3 cut(s)	165, 729, 730
SduI	GDGCHC	3 cut(s)	569, 750, 820
SfaNI	GCATC	4 cut(s)	527, 1096, 1175, 1416
SfcI	CTRYAG	1 cut(s)	1114
SfuI	TTCGAA	1 cut(s)	1161
SinI	GGWCC	1 cut(s)	656
SmaI	CCCGGG	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	1043, 1136
SmoI	CTYRAG	2 cut(s)	1043, 1136
Sse9I	AATT	5 cut(s)	136, 301, 640, 855, 1192
SsiI	CCGC	6 cut(s)	298, 770, 1109, 1168, 1334, 1383
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	3 cut(s)	365, 1092, 1533
SstI	GAGCTC	3 cut(s)	569, 750, 820
StyD4I	CCNGG	3 cut(s)	163, 727, 728
StyI	CCWWGG	1 cut(s)	1253
TaaI	ACNGT	2 cut(s)	232, 1458
TaiI	ACGT	6 cut(s)	12, 243, 363, 474, 600, 1409
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	5 cut(s)	136, 301, 640, 855, 1192
TatI	WGTACW	2 cut(s)	867, 1011
TauI	GCSGC	1 cut(s)	1112
TfiI	GAWTC	8 cut(s)	150, 198, 219, 407, 687, 1039, 1237, 1400
Tru1I	TTAA	4 cut(s)	33, 941, 954, 1412
Tru9I	TTAA	4 cut(s)	33, 941, 954, 1412
TscAI	CASTG	3 cut(s)	260, 447, 978
TseI	GCWGC	1 cut(s)	381
TspDTI	ATGAA	4 cut(s)	798, 924, 1341, 1484
TspGWI	ACGGA	2 cut(s)	348, 669
TspMI	CCCGGG	1 cut(s)	728
TspRI	CASTG	3 cut(s)	260, 447, 978
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	2 cut(s)	136, 640
XceI	RCATGY	1 cut(s)	1221
XmaI	CCCGGG	1 cut(s)	728
XspI	CTAG	3 cut(s)	365, 1092, 1533
ZraI	GACGTC	1 cut(s)	1407
ZrmI	AGTACT	1 cut(s)	1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.