Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008360.1

Orthogroup ID

OG0007978

Physical Location & Seq

Genomic Coordinates Reverse (-)

20570 .. 23286

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008360.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

atgtcacacctctgtgattttcaaatccacattaatggtctgcaaatattctttgtgaatgaggaggttttatcaacatatgcagggaggttgaagaagattatcaagcaagaaaggagaagatcccagatcaagtactcggggattgaaatcgaagacttccctggaggccctgatgggtttgagttgatctcaaggttctgttacagcaatggaagaatcacaacaacagtttcaaatgtgtccctcctccattgctgtgcagtctttcttggtatgactgagaaagtctcaaccaacaatctcttgaaacaaacagaaacctttcttgagggactctttgactggtcatggaaagaaatactagtctgcctgaaaagctgtgagtcattcttgaactatgcagattcttgtggtcttgtagacaagctcatttgtgcagttttagcaaagattgctcagaattcagacataggcagcctcattgctacttcgtcttcgtcgtcttcatctccagaaactacatctgggttcagagtgtcttcctcatttaagaacacccctgagtcactcaagccaagttcatcaagtagagcttggtggtttgatgatgtgtccattttacccccaaagatcattgagaaactcatccaaagcttaggggcgtatggttctgaaaacaacagcttgatcctcacaaggtttctcctccattacctgaaaatttcagctcaaagaaagaaaggcaatactagtcacagatcatccgagtttagtgctcttgcagacacagctattcatgggattattttggtgggcaaaaaagtcttttcctgcagagccttgttttgggttttgaggattgtgtctggttttggaatcagtagagagtacagacttggtttggagagattgattggtgggatgctcgatgaagcaacattggatgacttgttagtatctgggcatgataggggtgtttatgatgtcaatcttgttataaggttgataagagtttttgctaaaagtgagggggtttctgtgcaaaagttgaggaaagctggtaggttgatcgataagtacctaggtgaaatatcacctgatcagaatctcaagatttctaaatttcttggagttgcagagagtttaccagattctgctagggagtgctttgatggggcctacagagccattgatatttatcttgagtctcacccgactctttcatttgaggagaggtcaagattatgcagatgcctaaattatgaaaagctgagcctggaagcgtgtaaagagcttgcaaagaatccgaaaatcccaccaagagttgcaattcaagcactcatttctcagcaatccaaagtaaccacaacagaagactttgtacatgccagtccaaggagtactgcaactgcaagtgatcattttcattcccattcacattccaattcccattcccaaattgttctgtacaacaagggtggtgtcggtgttgataaagatagttttccggaagaaagcagcttagatacgaagctaaatttgcagaggatgcaatggagggtggtggagttggagaaactgtgcagggaaatgaagggtcagatgtcaaggatgattaagaataatgtcttgagtagtagtaccccaactcatggtagagcacttcctagactttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

560

Amino Acids

62.54

Weight (kDa)

8.82

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19850
fragaria_vesca	FvH4_4g36690 FvH4_4g36690
malus_domestica	MD13G1008200.v1.1
prunus_persica	Prupe.1G344900_v2.0.a1 Prupe.1G344900_v2.0.a1
pyrus_communis	pycom05g06860 pycom07g12620 pycom13g00670 pycom16g00540 pycom16g00550 pycom16g04040
rosa_chinensis	RchiOBHm_Chr4g0446401
rosa_laevigata	RLG00000005664
rosa_multiflora	Rmu_sc0008360.1_g000004 Rmu_sc0010778.1_g000006 Rmu_sc0018598.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386840
rosa_rugosa	Rorug04G0371100
rosa_samantha	Rh4AG432600 Rh4BG441800 Rh4CG459100 Rh4DG440500
rosa_wichuraiana	Rw4G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	1655
AccI	GTMKAC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	1510
AclWI	GGATC	2 cut(s)	117, 685
AcsI	RAATTY	4 cut(s)	463, 723, 1124, 1540
AfaI	GTAC	7 cut(s)	137, 893, 1082, 1386, 1405, 1472, 1645
AfiI	CCNNNNNNNGG	3 cut(s)	849, 1398, 1655
AgsI	TTSAA	7 cut(s)	23, 94, 149, 237, 310, 397, 1337
AhlI	ACTAGT	2 cut(s)	364, 752
AjnI	CCWGG	2 cut(s)	163, 1278
AleI	CACNNNNGTG	1 cut(s)	12
Alw21I	GWGCWC	2 cut(s)	781, 1666
Alw26I	GTCTC	2 cut(s)	295, 1215
AlwI	GGATC	2 cut(s)	117, 685
AlwNI	CAGNNNCTG	1 cut(s)	1157
Ama87I	CYCGRG	1 cut(s)	139
Aor13HI	TCCGGA	1 cut(s)	1510
AoxI	GGCC	2 cut(s)	169, 1179
ApeKI	GCWGC	2 cut(s)	477, 1521
ApoI	RAATTY	4 cut(s)	463, 723, 1124, 1540
AseI	ATTAAT	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	1084
AspS9I	GGNCC	2 cut(s)	170, 1179
AsuHPI	GGTGA	3 cut(s)	1089, 1100, 1205
AvaI	CYCGRG	1 cut(s)	139
AvrII	CCTAGG	1 cut(s)	1084
BarI	GAAGNNNNNNTAC	2 cut(s)	1368, 1400
BbsI	GAAGAC	5 cut(s)	162, 489, 498, 534, 1383
Bbv12I	GWGCWC	2 cut(s)	781, 1666
BbvI	GCAGC	2 cut(s)	489, 1533
BccI	CCATC	2 cut(s)	170, 1169
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	2 cut(s)	165, 1280
BclI	TGATCA	2 cut(s)	1102, 1420
BcoDI	GTCTC	2 cut(s)	295, 1215
BcuI	ACTAGT	2 cut(s)	364, 752
BfaI	CTAG	5 cut(s)	365, 753, 1085, 1161, 1671
BfmI	CTRYAG	2 cut(s)	835, 1183
BisI	GCNGC	2 cut(s)	478, 1522
BlnI	CCTAGG	1 cut(s)	1084
BlpI	GCTNAGC	1 cut(s)	1274
BlsI	GCNGC	2 cut(s)	479, 1523
BmcAI	AGTACT	2 cut(s)	137, 1405
Bme1390I	CCNGG	2 cut(s)	165, 1280
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	170, 1179
BmiI	GGNNCC	1 cut(s)	1180
BmrFI	CCNGG	2 cut(s)	165, 1280
BmsI	GCATC	3 cut(s)	915, 1244, 1542
BpiI	GAAGAC	5 cut(s)	162, 489, 498, 534, 1383
BplI	GAGNNNNNCTC	4 cut(s)	176, 208, 275, 307
BpmI	CTGGAG	2 cut(s)	186, 498
Bpu10I	CCTNAGC	1 cut(s)	658
Bpu1102I	GCTNAGC	1 cut(s)	1274
BpuEI	CTTGAG	6 cut(s)	178, 350, 557, 1097, 1226, 1654
Bsa29I	ATCGAT	1 cut(s)	1074
BsaBI	GATNNNNATC	4 cut(s)	149, 990, 1107, 1200
BsaJI	CCNNGG	3 cut(s)	163, 1084, 1397
BsaWI	WCCGGW	1 cut(s)	1510
BsaXI	ACNNNNNCTCC	2 cut(s)	1568, 1598
Bsc4I	CCNNNNNNNGG	3 cut(s)	849, 1398, 1655
Bse1I	ACTGG	2 cut(s)	350, 1392
Bse3DI	GCAATG	4 cut(s)	217, 253, 483, 1562
Bse8I	GATNNNNATC	4 cut(s)	149, 990, 1107, 1200
BseAI	TCCGGA	1 cut(s)	1510
BseBI	CCWGG	2 cut(s)	165, 1280
BseCI	ATCGAT	1 cut(s)	1074
BseDI	CCNNGG	3 cut(s)	163, 1084, 1397
BseGI	GGATG	6 cut(s)	648, 764, 930, 952, 1557, 1620
BseJI	GATNNNNATC	4 cut(s)	149, 990, 1107, 1200
BseLI	CCNNNNNNNGG	3 cut(s)	849, 1398, 1655
BseMI	GCAATG	4 cut(s)	217, 253, 483, 1562
BseMII	CTCAG	5 cut(s)	273, 473, 555, 1265, 1364
BseNI	ACTGG	2 cut(s)	350, 1392
BseRI	GAGGAG	4 cut(s)	77, 239, 698, 1247
BseXI	GCAGC	2 cut(s)	489, 1533
BsgI	GTGCAG	3 cut(s)	282, 459, 1606
BshFI	GGCC	2 cut(s)	171, 1181
BshVI	ATCGAT	1 cut(s)	1074
BsiHKAI	GWGCWC	2 cut(s)	781, 1666
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	1511
BslFI	GGGAC	2 cut(s)	229, 348
BslI	CCNNNNNNNGG	3 cut(s)	849, 1398, 1655
BsmAI	GTCTC	2 cut(s)	295, 1215
BsmFI	GGGAC	2 cut(s)	229, 348
BsnI	GGCC	2 cut(s)	171, 1181
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	781, 1666
Bsp13I	TCCGGA	1 cut(s)	1510
Bsp1407I	TGTACA	2 cut(s)	1384, 1470
Bsp143I	GATC	9 cut(s)	122, 129, 189, 633, 690, 761, 1071, 1102, 1420
Bsp1720I	GCTNAGC	1 cut(s)	1274
BspANI	GGCC	2 cut(s)	171, 1181
BspCNI	CTCAG	5 cut(s)	274, 472, 556, 1266, 1363
BspDI	ATCGAT	1 cut(s)	1074
BspEI	TCCGGA	1 cut(s)	1510
BspLI	GGNNCC	1 cut(s)	1180
BspMAI	CTGCAG	1 cut(s)	839
BspPI	GGATC	2 cut(s)	117, 685
BsrDI	GCAATG	4 cut(s)	217, 253, 483, 1562
BsrGI	TGTACA	2 cut(s)	1384, 1470
BsrI	ACTGG	2 cut(s)	350, 1392
BssECI	CCNNGG	3 cut(s)	163, 1084, 1397
BssMI	GATC	9 cut(s)	122, 129, 189, 633, 690, 761, 1071, 1102, 1420
BssT1I	CCWWGG	2 cut(s)	1084, 1397
Bst2UI	CCWGG	2 cut(s)	165, 1280
Bst4CI	ACNGT	2 cut(s)	232, 1584
BstAPI	GCANNNNNTGC	2 cut(s)	455, 1552
BstAUI	TGTACA	2 cut(s)	1384, 1470
BstC8I	GCNNGC	1 cut(s)	1299
BstDEI	CTNAG	7 cut(s)	282, 459, 564, 658, 1274, 1350, 1525
BstF5I	GGATG	6 cut(s)	648, 764, 930, 952, 1557, 1620
BstKTI	GATC	9 cut(s)	125, 132, 192, 636, 693, 764, 1074, 1105, 1423
BstMAI	GTCTC	2 cut(s)	295, 1215
BstMBI	GATC	9 cut(s)	122, 129, 189, 633, 690, 761, 1071, 1102, 1420
BstMWI	GCNNNNNNNGC	8 cut(s)	378, 446, 455, 791, 1187, 1337, 1543, 1552
BstNI	CCWGG	2 cut(s)	165, 1280
BstNSI	RCATGY	1 cut(s)	1391
BstSCI	CCNGG	2 cut(s)	163, 1278
BstSFI	CTRYAG	2 cut(s)	835, 1183
BstV1I	GCAGC	2 cut(s)	489, 1533
BstV2I	GAAGAC	5 cut(s)	162, 489, 498, 534, 1383
BstX2I	RGATCY	1 cut(s)	122
BstXI	CCANNNNNNTGG	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	1074
BsuRI	GGCC	2 cut(s)	171, 1181
BsuTUI	ATCGAT	1 cut(s)	1074
BtsCI	GGATG	6 cut(s)	648, 764, 930, 952, 1557, 1620
Cac8I	GCNNGC	1 cut(s)	1299
CaiI	CAGNNNCTG	1 cut(s)	1157
Cfr13I	GGNCC	2 cut(s)	170, 1179
ClaI	ATCGAT	1 cut(s)	1074
Csp6I	GTAC	7 cut(s)	136, 892, 1081, 1385, 1404, 1471, 1644
CspCI	CAANNNNNGTGG	2 cut(s)	1462, 1497
CviAII	CATG	5 cut(s)	351, 800, 968, 1388, 1655
CviQI	GTAC	7 cut(s)	136, 892, 1081, 1385, 1404, 1471, 1644
DdeI	CTNAG	7 cut(s)	282, 459, 564, 658, 1274, 1350, 1525
DpnI	GATC	9 cut(s)	124, 131, 191, 635, 692, 763, 1073, 1104, 1422
DpnII	GATC	9 cut(s)	122, 129, 189, 633, 690, 761, 1071, 1102, 1420
Eco130I	CCWWGG	2 cut(s)	1084, 1397
Eco88I	CYCGRG	1 cut(s)	139
EcoO109I	RGGNCCY	2 cut(s)	170, 1179
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	163, 1278
EcoT14I	CCWWGG	2 cut(s)	1084, 1397
ErhI	CCWWGG	2 cut(s)	1084, 1397
FaeI	CATG	5 cut(s)	354, 803, 971, 1391, 1658
FalI	AAGNNNNNCTT	2 cut(s)	580, 612
FaqI	GGGAC	2 cut(s)	229, 348
FatI	CATG	5 cut(s)	350, 799, 967, 1387, 1654
FauNDI	CATATG	1 cut(s)	79
FbaI	TGATCA	2 cut(s)	1102, 1420
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	478, 1522
FokI	GGATG	6 cut(s)	635, 751, 937, 959, 1564, 1627
Fsp4HI	GCNGC	2 cut(s)	478, 1522
FspBI	CTAG	5 cut(s)	365, 753, 1085, 1161, 1671
GluI	GCNGC	2 cut(s)	478, 1522
GsuI	CTGGAG	2 cut(s)	186, 498
HaeIII	GGCC	2 cut(s)	171, 1181
HapII	CCGG	1 cut(s)	1511
Hin1II	CATG	5 cut(s)	354, 803, 971, 1391, 1658
HindIII	AAGCTT	1 cut(s)	655
HpaII	CCGG	1 cut(s)	1511
HphI	GGTGA	3 cut(s)	1089, 1100, 1205
Hpy166II	GTNNAC	2 cut(s)	424, 1148
Hpy188I	TCNGA	8 cut(s)	462, 469, 536, 676, 769, 1107, 1311, 1605
Hpy188III	TCNNGA	9 cut(s)	307, 329, 394, 515, 1114, 1205, 1242, 1511, 1633
Hpy8I	GTNNAC	2 cut(s)	424, 1148
Hpy99I	CGWCG	1 cut(s)	505
HpyAV	CCTTC	1 cut(s)	1591
HpyCH4III	ACNGT	2 cut(s)	232, 1584
HpyF10VI	GCNNNNNNNGC	8 cut(s)	378, 446, 455, 791, 1187, 1337, 1543, 1552
HpyF3I	CTNAG	7 cut(s)	282, 459, 564, 658, 1274, 1350, 1525
Hsp92II	CATG	5 cut(s)	354, 803, 971, 1391, 1658
Kpn2I	TCCGGA	1 cut(s)	1510
Ksp22I	TGATCA	2 cut(s)	1102, 1420
Kzo9I	GATC	9 cut(s)	122, 129, 189, 633, 690, 761, 1071, 1102, 1420
Lsp1109I	GCAGC	2 cut(s)	489, 1533
LweI	GCATC	3 cut(s)	915, 1244, 1542
MaeI	CTAG	5 cut(s)	365, 753, 1085, 1161, 1671
MaeIII	GTNAC	5 cut(s)	3, 203, 567, 755, 1363
MalI	GATC	9 cut(s)	124, 131, 191, 635, 692, 763, 1073, 1104, 1422
MboI	GATC	9 cut(s)	122, 129, 189, 633, 690, 761, 1071, 1102, 1420
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	781, 1666
MluCI	AATT	8 cut(s)	463, 723, 1124, 1261, 1332, 1447, 1461, 1540
MlyI	GAGTC	5 cut(s)	330, 395, 575, 1213, 1217
MmeI	TCCRAC	1 cut(s)	1554
MroI	TCCGGA	1 cut(s)	1510
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	3 cut(s)	33, 552, 1620
MslI	CAYNNNNRTG	3 cut(s)	12, 33, 258
MspI	CCGG	1 cut(s)	1511
MspR9I	CCNGG	2 cut(s)	165, 1280
MvaI	CCWGG	2 cut(s)	165, 1280
MwoI	GCNNNNNNNGC	8 cut(s)	378, 446, 455, 791, 1187, 1337, 1543, 1552
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	9 cut(s)	122, 129, 189, 633, 690, 761, 1071, 1102, 1420
NlaIII	CATG	5 cut(s)	354, 803, 971, 1391, 1658
NlaIV	GGNNCC	1 cut(s)	1180
NmuCI	GTSAC	3 cut(s)	3, 567, 755
NspI	RCATGY	1 cut(s)	1391
OliI	CACNNNNGTG	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	6 cut(s)	219, 407, 879, 1108, 1154, 1306
PflMI	CCANNNNNTGG	1 cut(s)	1655
PkrI	GCNGC	2 cut(s)	479, 1523
PleI	GAGTC	5 cut(s)	330, 394, 574, 1213, 1216
PpsI	GAGTC	5 cut(s)	330, 394, 574, 1213, 1216
PshBI	ATTAAT	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	1001
Psp6I	CCWGG	2 cut(s)	163, 1278
PspGI	CCWGG	2 cut(s)	163, 1278
PspN4I	GGNNCC	1 cut(s)	1180
PspPI	GGNCC	2 cut(s)	170, 1179
PstI	CTGCAG	1 cut(s)	839
PstNI	CAGNNNCTG	1 cut(s)	1157
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	7 cut(s)	137, 893, 1082, 1386, 1405, 1472, 1645
RsaNI	GTAC	7 cut(s)	136, 892, 1081, 1385, 1404, 1471, 1644
RseI	CAYNNNNRTG	3 cut(s)	12, 33, 258
SaqAI	TTAA	3 cut(s)	33, 552, 1620
SatI	GCNGC	2 cut(s)	478, 1522
Sau3AI	GATC	9 cut(s)	122, 129, 189, 633, 690, 761, 1071, 1102, 1420
Sau96I	GGNCC	2 cut(s)	170, 1179
ScaI	AGTACT	2 cut(s)	137, 1405
SchI	GAGTC	5 cut(s)	330, 395, 575, 1213, 1217
ScrFI	CCNGG	2 cut(s)	165, 1280
SduI	GDGCHC	2 cut(s)	781, 1666
SfaNI	GCATC	3 cut(s)	915, 1244, 1542
SfcI	CTRYAG	2 cut(s)	835, 1183
SmiMI	CAYNNNNRTG	3 cut(s)	12, 33, 258
SmlI	CTYRAG	6 cut(s)	193, 329, 572, 1112, 1205, 1633
SmoI	CTYRAG	6 cut(s)	193, 329, 572, 1112, 1205, 1633
SpeI	ACTAGT	2 cut(s)	364, 752
Sse9I	AATT	8 cut(s)	463, 723, 1124, 1261, 1332, 1447, 1461, 1540
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	5 cut(s)	365, 753, 1085, 1161, 1671
StyD4I	CCNGG	2 cut(s)	163, 1278
StyI	CCWWGG	2 cut(s)	1084, 1397
TaaI	ACNGT	2 cut(s)	232, 1584
TaqI	TCGA	3 cut(s)	153, 930, 1074
TasI	AATT	8 cut(s)	463, 723, 1124, 1261, 1332, 1447, 1461, 1540
TatI	WGTACW	5 cut(s)	135, 891, 1384, 1403, 1470
TfiI	GAWTC	6 cut(s)	219, 407, 879, 1108, 1154, 1306
Tru1I	TTAA	3 cut(s)	33, 552, 1620
Tru9I	TTAA	3 cut(s)	33, 552, 1620
TseFI	GTSAC	3 cut(s)	3, 567, 755
TseI	GCWGC	2 cut(s)	477, 1521
Tsp45I	GTSAC	3 cut(s)	3, 567, 755
TspDTI	ATGAA	8 cut(s)	498, 573, 788, 948, 1215, 1281, 1418, 1610
Van91I	CCANNNNNTGG	1 cut(s)	1655
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	4 cut(s)	463, 723, 1124, 1540
XceI	RCATGY	1 cut(s)	1391
XmaJI	CCTAGG	1 cut(s)	1084
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	5 cut(s)	365, 753, 1085, 1161, 1671
ZrmI	AGTACT	2 cut(s)	137, 1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.