Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007978

Physical Location & Seq

Genomic Coordinates Reverse (-)

2477692 .. 2478483

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGCGGTGCCGTCGCTGGGATGCAGCCTAATCAGCAGCAAGTGCAGCTCGTCGACGACCCGTTTTTAGCTAGGGGGAGTCGTCCATCACCACCGTCGATTTCCCAGATAAAGAATTCCAGATCGATCGAAATCGATGACTTTCTGGGAAGCCCTGATGGGTTCGAGTTAGTTTCTCGATTCTGTTATGACAACGGCAGAATCAAACTCACGGTTTCAAACGTGTGCCTACTCCACTGCTCTGCAATCTTCCTTGGCATGACCGAAAAGCTTTCGCCCCGCAATTTGTTGCAGAAAACAAGTCATTTTCTTGAGGGACTTTTCGAGTGGTCGTTCAAAGACGTACTAGTCTGCCTCAAAAGCTGCCTCTCGTTCTTCGACCACGCAGACTCGTCCGGTCTTTTAGACAAACTCATTACTGCACTGCTTGCAAAGATCGCTCAGAATTCTGACGTGAGCAACCTCATTGACACGTCGCCTTCGTCTTCGTCTTCACCGGAAACTGCATCTGGGTTCAGACTCTCTTCCACCCCGGAATCCATTAGGCTGAGCTCGTCCAGCAGAGCGTGGTGGTTCGATGACGTGGCCCTTCTGTCACCAAATATCATTGAGAAACTCCTCCAGATTTTAGGTGCTTACGGACCTGAAAACAATAGCTTGATCCTCACCTTCAGCTCCCGAAAGCCGTCCCTTTACCCATATTTTTCTTCACCTCCGCCGGCTCTGCTGTTGCGGCATCGTCCGATTCATCATCATCATCACTTGCGAGACCCGGGGAGTTGGGTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

264

Amino Acids

29.01

Weight (kDa)

6.75

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19850
fragaria_vesca	FvH4_4g36690 FvH4_4g36690
malus_domestica	MD13G1008200.v1.1
prunus_persica	Prupe.1G344900_v2.0.a1 Prupe.1G344900_v2.0.a1
pyrus_communis	pycom05g06860 pycom07g12620 pycom13g00670 pycom16g00540 pycom16g00550 pycom16g04040
rosa_chinensis	RchiOBHm_Chr4g0446401
rosa_laevigata	RLG00000005664
rosa_multiflora	Rmu_sc0008360.1_g000004 Rmu_sc0010778.1_g000006 Rmu_sc0018598.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386840
rosa_rugosa	Rorug04G0371100
rosa_samantha	Rh4AG432600 Rh4BG441800 Rh4CG459100 Rh4DG440500
rosa_wichuraiana	Rw4G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	4 cut(s)	6, 280, 716, 733
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	2 cut(s)	115, 445
AcuI	CTGAAG	1 cut(s)	655
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	1 cut(s)	18
AflIII	ACRYGT	2 cut(s)	222, 471
AgsI	TTSAA	2 cut(s)	219, 337
AhlI	ACTAGT	1 cut(s)	346
AjiI	CACGTC	3 cut(s)	454, 474, 583
AluBI	AGCT	7 cut(s)	49, 71, 271, 363, 552, 657, 675
AluI	AGCT	7 cut(s)	49, 71, 271, 363, 552, 657, 675
Alw21I	GWGCWC	1 cut(s)	554
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	1 cut(s)	655
Ama87I	CYCGRG	1 cut(s)	772
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	4 cut(s)	25, 37, 46, 363
ApoI	RAATTY	2 cut(s)	115, 445
AspS9I	GGNCC	2 cut(s)	586, 641
AsuC2I	CCSGG	3 cut(s)	533, 773, 774
AsuHPI	GGTGA	5 cut(s)	81, 486, 588, 658, 702
AvaI	CYCGRG	1 cut(s)	772
AvaII	GGWCC	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	554
BbsI	GAAGAC	2 cut(s)	477, 483
Bbv12I	GWGCWC	1 cut(s)	554
BbvI	GCAGC	4 cut(s)	37, 49, 58, 350
BccI	CCATC	2 cut(s)	94, 152
BceAI	ACGGC	2 cut(s)	211, 670
BcnI	CCSGG	3 cut(s)	533, 773, 774
BcoDI	GTCTC	1 cut(s)	762
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	2 cut(s)	72, 347
BisI	GCNGC	5 cut(s)	26, 38, 47, 364, 734
BlpI	GCTNAGC	1 cut(s)	548
BlsI	GCNGC	5 cut(s)	27, 39, 48, 365, 735
Bme1390I	CCNGG	3 cut(s)	533, 773, 774
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	772
BmgBI	CACGTC	3 cut(s)	454, 474, 583
BmgT120I	GGNCC	2 cut(s)	586, 641
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	3 cut(s)	533, 773, 774
BmsI	GCATC	3 cut(s)	12, 515, 745
BpiI	GAAGAC	2 cut(s)	477, 483
BpmI	CTGGAG	1 cut(s)	605
Bpu1102I	GCTNAGC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	3 cut(s)	533, 773, 774
Bsa29I	ATCGAT	2 cut(s)	125, 135
BsaBI	GATNNNNATC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	4 cut(s)	253, 531, 772, 773
BsaWI	WCCGGW	2 cut(s)	395, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	718
Bse8I	GATNNNNATC	1 cut(s)	131
BseCI	ATCGAT	2 cut(s)	125, 135
BseDI	CCNNGG	4 cut(s)	253, 531, 772, 773
BseGI	GGATG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	455, 539
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	4 cut(s)	37, 49, 58, 350
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	2 cut(s)	65, 405
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	8
BshVI	ATCGAT	2 cut(s)	125, 135
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	554
BsiHKCI	CYCGRG	1 cut(s)	772
BsiSI	CCGG	5 cut(s)	396, 497, 533, 719, 773
BslFI	GGGAC	2 cut(s)	330, 673
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	2 cut(s)	330, 673
BsnI	GGCC	1 cut(s)	587
Bso31I	GGTCTC	1 cut(s)	762
BsoBI	CYCGRG	1 cut(s)	772
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	4 cut(s)	122, 126, 435, 660
Bsp1720I	GCTNAGC	1 cut(s)	548
BspACI	CCGC	4 cut(s)	6, 280, 716, 733
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	2 cut(s)	454, 540
BspDI	ATCGAT	2 cut(s)	125, 135
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	655
BspT107I	GGYRCC	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	762
BsrFI	RCCGGY	1 cut(s)	718
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	4 cut(s)	253, 531, 772, 773
BssMI	GATC	4 cut(s)	122, 126, 435, 660
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	96, 214
Bst6I	CTCTTC	1 cut(s)	529
BstAPI	GCANNNNNTGC	2 cut(s)	43, 428
BstC8I	GCNNGC	2 cut(s)	429, 720
BstDEI	CTNAG	2 cut(s)	441, 548
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	4 cut(s)	125, 129, 438, 663
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	4 cut(s)	122, 126, 435, 660
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	9 cut(s)	34, 43, 46, 360, 428, 437, 558, 724, 733
BstSCI	CCNGG	3 cut(s)	531, 771, 772
BstV1I	GCAGC	4 cut(s)	37, 49, 58, 350
BstV2I	GAAGAC	2 cut(s)	477, 483
Bsu15I	ATCGAT	2 cut(s)	125, 135
BsuRI	GGCC	1 cut(s)	587
BsuTUI	ATCGAT	2 cut(s)	125, 135
BtrI	CACGTC	3 cut(s)	454, 474, 583
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	2 cut(s)	235, 422
BtsIMutI	CAGTG	2 cut(s)	235, 422
Cac8I	GCNNGC	2 cut(s)	429, 720
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	2 cut(s)	586, 641
Cfr9I	CCCGGG	1 cut(s)	772
ClaI	ATCGAT	2 cut(s)	125, 135
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	259
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	441, 548
DpnI	GATC	4 cut(s)	124, 128, 437, 662
DpnII	GATC	4 cut(s)	122, 126, 435, 660
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
EciI	GGCGGA	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	554
Eco31I	GGTCTC	1 cut(s)	762
Eco47I	GGWCC	1 cut(s)	641
Eco53kI	GAGCTC	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	655
Eco88I	CYCGRG	1 cut(s)	772
EcoICRI	GAGCTC	1 cut(s)	552
EcoRI	GAATTC	2 cut(s)	115, 445
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	262
FaiI	YATR	3 cut(s)	189, 260, 700
FaqI	GGGAC	2 cut(s)	330, 673
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	26, 38, 47, 364, 734
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	5 cut(s)	26, 38, 47, 364, 734
FspBI	CTAG	2 cut(s)	72, 347
GluI	GCNGC	5 cut(s)	26, 38, 47, 364, 734
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	5 cut(s)	396, 497, 533, 719, 773
Hin1II	CATG	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	7 cut(s)	79, 180, 201, 389, 519, 536, 745
HpaII	CCGG	5 cut(s)	396, 497, 533, 719, 773
HphI	GGTGA	5 cut(s)	81, 486, 588, 658, 702
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	4 cut(s)	444, 451, 518, 744
Hpy188III	TCNNGA	6 cut(s)	120, 177, 311, 622, 678, 789
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	5 cut(s)	17, 56, 59, 100, 478
HpyAV	CCTTC	3 cut(s)	489, 599, 679
HpyCH4III	ACNGT	2 cut(s)	96, 214
HpyCH4IV	ACGT	5 cut(s)	222, 342, 453, 473, 582
HpyCH4V	TGCA	7 cut(s)	25, 46, 245, 292, 422, 431, 506
HpyF10VI	GCNNNNNNNGC	9 cut(s)	34, 43, 46, 360, 428, 437, 558, 724, 733
HpyF3I	CTNAG	2 cut(s)	441, 548
HpySE526I	ACGT	5 cut(s)	222, 342, 453, 473, 582
Hsp92II	CATG	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	718
KroNI	GCCGGC	1 cut(s)	720
Kzo9I	GATC	4 cut(s)	122, 126, 435, 660
LmnI	GCTCC	1 cut(s)	680
Lsp1109I	GCAGC	4 cut(s)	37, 49, 58, 350
LweI	GCATC	3 cut(s)	12, 515, 745
MaeI	CTAG	2 cut(s)	72, 347
MaeII	ACGT	5 cut(s)	222, 342, 453, 473, 582
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	4 cut(s)	124, 128, 437, 662
MboI	GATC	4 cut(s)	122, 126, 435, 660
MboII	GAAGA	6 cut(s)	241, 367, 477, 483, 516, 699
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	3 cut(s)	115, 283, 445
MlyI	GAGTC	3 cut(s)	88, 383, 513
MnlI	CCTC	7 cut(s)	307, 365, 377, 473, 629, 674, 723
MroNI	GCCGGC	1 cut(s)	718
MspI	CCGG	5 cut(s)	396, 497, 533, 719, 773
MspR9I	CCNGG	3 cut(s)	533, 773, 774
MwoI	GCNNNNNNNGC	9 cut(s)	34, 43, 46, 360, 428, 437, 558, 724, 733
NaeI	GCCGGC	1 cut(s)	720
NciI	CCSGG	3 cut(s)	533, 773, 774
NdeII	GATC	4 cut(s)	122, 126, 435, 660
NgoMIV	GCCGGC	1 cut(s)	718
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	720
PfeI	GAWTC	4 cut(s)	180, 201, 536, 745
PkrI	GCNGC	5 cut(s)	27, 39, 48, 365, 735
Ple19I	CGATCG	1 cut(s)	129
PleI	GAGTC	3 cut(s)	87, 383, 513
PpsI	GAGTC	3 cut(s)	87, 383, 513
Psp124BI	GAGCTC	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	2 cut(s)	586, 641
PvuI	CGATCG	1 cut(s)	129
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	554
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	5 cut(s)	26, 38, 47, 364, 734
Sau3AI	GATC	4 cut(s)	122, 126, 435, 660
Sau96I	GGNCC	2 cut(s)	586, 641
SchI	GAGTC	3 cut(s)	88, 383, 513
ScrFI	CCNGG	3 cut(s)	533, 773, 774
SduI	GDGCHC	1 cut(s)	554
SfaNI	GCATC	3 cut(s)	12, 515, 745
SgrDI	CGTCGACG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	641
SmaI	CCCGGG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	346
Sse9I	AATT	3 cut(s)	115, 283, 445
SsiI	CCGC	4 cut(s)	6, 280, 716, 733
SspMI	CTAG	2 cut(s)	72, 347
SstI	GAGCTC	1 cut(s)	554
StyD4I	CCNGG	3 cut(s)	531, 771, 772
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	96, 214
TaiI	ACGT	5 cut(s)	225, 345, 456, 476, 585
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	115, 283, 445
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	4 cut(s)	180, 201, 536, 745
TscAI	CASTG	2 cut(s)	242, 429
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	4 cut(s)	25, 37, 46, 363
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	1 cut(s)	737
TspGWI	ACGGA	1 cut(s)	654
TspMI	CCCGGG	1 cut(s)	772
TspRI	CASTG	2 cut(s)	242, 429
VpaK11BI	GGWCC	1 cut(s)	641
XapI	RAATTY	2 cut(s)	115, 445
XmaI	CCCGGG	1 cut(s)	772
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	2 cut(s)	72, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.