Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007978

Physical Location & Seq

Genomic Coordinates Reverse (-)

58178114 .. 58186835

Gene Structure 8722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG441800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2895 bp

ATGGCAAACTATTCAGGAAAAGGAGCCCCTTCGAATGGGTCTGTCTATGTTTGCAACTTGCCGGAGGGGACTGATGAGAATATGCTGGCCGAATATTTCGGTACCATCGGGTTGTTGAAGAAAGACAAGCGAACAGGTGGACCAAAAATTTGGTTGTACAGAGACAAAGTGACAGATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCACATGCTGCGTTTGCAGCTGTTGAATGGTTTAACGACAAGGAGTTTCATGGTAATGTGATCGGGGTTCATATAGCAGAGTCGAAAAGAGATGACCAGACATATAACCCTGGGGTTGATCTAAGCTCTACTGGCGGTGATCCAATTTATGGCGGAGTAGAGGAAAATGCTGAGGACATGAATGGGGGTGGCGGTAAAGGCCGGGGTGATGTTCCTGGGAAAGCATGGCAACAAGATGGAGACTGGACGTGTCCGAATACAAGTTGTGGCAATGTCAACTTTGCATTCCGTGGTGTGTGCAATCGCTGTGGAAGTGCTCGACCAACTGGTGCTTCTGGGGGTGGGGCAGGGGGTGGTGGTCGTGGCAGGGGCCGCGGTGTTGACTCCGGGGGCCGTGGTGGTCCTGTTGGTGCTCCTACAGGGGGACTCTTTGGTCCAAACGATTGGTCTTGTCCAATGTGTGCCAACATTAACTGGGCAAAGCGTACAAAATGCAATATATGCAACACAAATAAACCTGGGCACAATGAGGGTGGTGTAAGAGGAGGGCGTGGTGGTGGTTACAAAGAACTTGATGAAGAAGAACTGGAGGAAATCAAGCGACGTCGGCGAGAGGCTGAAGAAGATGATGGAGAGATGTATGATGAGTTTGGCAACCTGAAGAAAAAATTTCGAGCTAAAACATCACAGCAAGCTGAGACTGGACGGGCTCTTCCAGGTGCTGGGCGTGCTGGATGGGAGGTTGAGGAAATAGGTGTTGTTGATAGAGATGGCAGAGAAAGAAATAGAGATAGAGGAAGGGAACGTGATGATAGAGCGGGCAGCAAGAACAGGGAAAGAGATGATAGGGATAGGCGTCGCAGTCGAAGCAGAGAAAGGGATAGGGGGAGAGATCGACCCCGAGATTATGATCGGGAGAAAGAATATGGGCGGGAGAGGGACCGGGATAGGGATAGGGATAGGGATCGGGGCAGGCACCAGGTTTTCTTGATTTCATTCAATGCAAAAGTAGCAGCTATGTCACACCTCTGTGATTTTCAAATCCACATTAATGGTCTGCAAACATTCTTTGTGAATGAGGAGGTTTTATCAACATATGCAGGGAGGTTGAAGAAGATTATCAAGCAAGAAAGGAGAAGATCCCAGATCAAGTACTCGGGGATTGAAATCGAAGACTTCCCTGGAGGCCCTGATGGGTTTGAGTTGATCTCAAGGTTCTGTTACAGCAATGGAAGAATCACAACAACAGTTTCAAATGTGTCCCTCCTCCATTGCTGTGCAGTCTTTCTTGGTATGACTGAGAAATTCTCAACCAACAATCTCTTGAAACAAACAGAAACCTTTCTTGAGGGACTCTTTGACTGGTCATGGAAAGAAATACTAGTCTGCCTGAAAAGCTGTGAGTCATTCTTGAACTATGCAGATTCTTCTGGTCTTGTAGACAAGCTCATTTGTGCAGTTTTAGCAAAGATTGCTCAGAATTCAGACATAGGCAGCCTCATTGCTACTTCGTCTTCGTCGTCTTCATCTCCAGAAACTACATCTGGGTTCAGAGTGTCTTCCTCATTTAAGAACACCCCTGAGTCACTCAAGCCAAGTTCATCAAGTAGAGCTTGGTGGTTTGATGATGTGTCCATTTTACCCCCAAAGATCATTGAGAAACTCATCCAAAGTTTAGGGGCGTATGGTTCTGAAAACAACAACTTGATCCTCACAAGGTTTCTCCTCCATTACCTGAAAATTTCAGCTCAAAGAAAGAAAGGCAATACTAGTCACAGATCATCTGAGTTTAGTGGTCTTGCAGACACAGCTATTCATGGGGTTATTTTGGTGGGTAAAAATGTCTTTTCCTGCAGAGCCTTGTTTTGGGTTTTGAGGATTGTGTCTGGTTTTGGAATCAGTAGAGAGTACAGACTTGGTTTGGAGAGATTGATTGGTGGGATGCTTGATGAAGCAACATTGGATGACTTGTTAGTATCTGGGCATGATAGGGGTGTTTATGATGTCAATCTTGTTATAAGGTTGATAAGAGTATTTGCTAAAAGTGAGGGGGTTTCTGTGCAAAAGTTGAGGAAAGCTGGTAGGTTGATCGATAAGTACCTAGGTGAGATATCACCTGATCAGAATCTCAAGATTTCTAAATTTCTTGGAGTTGCAGAGAGTTTACCAGATTCTGCTAGGGAGTGCTTTGATGGGGCCTACAGAGCCATTGATATTTATCTTGAGTCTCACCCGACTCTTTCATTTGAGGAGAGGTCGAGATTATGCAGATGCCTAAATTATGAAAAGCTGAGCCTCGAAGCGTGTAAAGAGCTTGCAAAGAATCCGAAAATCCCACCAAGAGTTGCAATTCAAGCACTCATTTCTCAGCAATCCAAAGTAACAACAACAGAAGACTTTGTACATGCCAGTCCAAGGAGTACTGCAACTGCAAGTGATCATTTTCATTCCCATTCCCAAATTGTTCTGTACAACAAGGGTGGTGTCGGTGTTGATAAAGATAGTTTTCCGGAAGAAAGCAGCTTAGATACGAAGCTAAATTTGCAGAGGATGCAATGGAGGGTGGTGGAGTTGGAGAAACTGTGCAGGGAAATGAAGGGTCAGATGTCAAGGATGGTTAAGAATAATGTCTTCAGTAGTAGTACCCCAACTCATGGTAGAGCTCTTCCTAGACTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

964

Amino Acids

107.04

Weight (kDa)

8.62

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	15 - 92	5.8e-07	RNA recognition motif
Zn_ribbon_RanBP	PF00641	150 - 179	5.7e-06	Zn-finger in Ran binding protein and others
NPH3	PF03000	610 - 840	2.7e-59	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19850
fragaria_vesca	FvH4_4g36690 FvH4_4g36690
malus_domestica	MD13G1008200.v1.1
prunus_persica	Prupe.1G344900_v2.0.a1 Prupe.1G344900_v2.0.a1
pyrus_communis	pycom05g06860 pycom07g12620 pycom13g00670 pycom16g00540 pycom16g00550 pycom16g04040
rosa_chinensis	RchiOBHm_Chr4g0446401
rosa_laevigata	RLG00000005664
rosa_multiflora	Rmu_sc0008360.1_g000004 Rmu_sc0010778.1_g000006 Rmu_sc0018598.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386840
rosa_rugosa	Rorug04G0371100
rosa_samantha	Rh4AG432600 Rh4BG441800 Rh4CG459100 Rh4DG440500
rosa_wichuraiana	Rw4G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2231
AasI	GACNNNNNNGTC	1 cut(s)	645
AatII	GACGTC	1 cut(s)	820
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	2 cut(s)	101, 1188
AccB7I	CCANNNNNTGG	3 cut(s)	362, 935, 2867
AccBSI	CCGCTC	1 cut(s)	1031
AccI	GTMKAC	1 cut(s)	1653
AccII	CGCG	1 cut(s)	588
AccIII	TCCGGA	1 cut(s)	2722
AciI	CCGC	7 cut(s)	348, 366, 405, 586, 588, 1031, 1144
AclWI	GGATC	6 cut(s)	206, 219, 347, 1185, 1347, 1915
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	7 cut(s)	147, 881, 1517, 1693, 1953, 2354, 2752
AcuI	CTGAAG	3 cut(s)	852, 893, 2830
AcyI	GRCGYC	2 cut(s)	817, 1069
AfiI	CCNNNNNNNGG	8 cut(s)	35, 362, 635, 935, 1162, 2079, 2628, 2867
AflIII	ACRYGT	1 cut(s)	461
AhlI	ACTAGT	2 cut(s)	1594, 1982
AjiI	CACGTC	1 cut(s)	462
AjnI	CCWGG	6 cut(s)	322, 427, 730, 928, 1191, 1393
AjuI	GAANNNNNNNTTGG	2 cut(s)	529, 561
AleI	CACNNNNGTG	1 cut(s)	1242
Alw21I	GWGCWC	3 cut(s)	532, 628, 2878
Alw26I	GTCTC	4 cut(s)	156, 447, 905, 2445
AlwI	GGATC	6 cut(s)	206, 219, 347, 1185, 1347, 1915
AlwNI	CAGNNNCTG	2 cut(s)	935, 2387
Ama87I	CYCGRG	2 cut(s)	1113, 1369
Aor13HI	TCCGGA	1 cut(s)	2722
AoxI	GGCC	6 cut(s)	87, 412, 583, 604, 1399, 2409
ApeKI	GCWGC	6 cut(s)	221, 230, 1035, 1226, 1707, 2733
ApoI	RAATTY	7 cut(s)	147, 881, 1517, 1693, 1953, 2354, 2752
ArsI	GACNNNNNNTTYG	4 cut(s)	132, 164, 644, 676
AseI	ATTAAT	1 cut(s)	1263
Asp700I	GAANNNNTTC	1 cut(s)	1554
Asp718I	GGTACC	1 cut(s)	101
AspA2I	CCTAGG	1 cut(s)	2314
AspS9I	GGNCC	8 cut(s)	140, 583, 604, 614, 647, 1153, 1400, 2409
AsuC2I	CCSGG	3 cut(s)	416, 601, 1157
AsuHPI	GGTGA	5 cut(s)	362, 431, 2319, 2330, 2435
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	2 cut(s)	1113, 1369
AvaII	GGWCC	4 cut(s)	140, 614, 647, 1153
AvrII	CCTAGG	1 cut(s)	2314
BaeGI	GKGCMC	1 cut(s)	738
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	2 cut(s)	101, 1188
BanII	GRGCYC	3 cut(s)	28, 925, 2878
BarI	GAAGNNNNNNTAC	2 cut(s)	2598, 2630
BbsI	GAAGAC	6 cut(s)	1392, 1719, 1728, 1764, 2613, 2836
Bbv12I	GWGCWC	3 cut(s)	532, 628, 2878
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	6 cut(s)	208, 242, 1047, 1238, 1719, 2745
BccI	CCATC	8 cut(s)	113, 443, 836, 942, 977, 1400, 2399, 2821
BceAI	ACGGC	1 cut(s)	591
BciT130I	CCWGG	6 cut(s)	324, 429, 732, 930, 1193, 1395
BclI	TGATCA	2 cut(s)	2332, 2650
BcnI	CCSGG	3 cut(s)	416, 601, 1157
BcoDI	GTCTC	4 cut(s)	156, 447, 905, 2445
BcuI	ACTAGT	2 cut(s)	1594, 1982
BfaI	CTAG	5 cut(s)	1595, 1983, 2315, 2391, 2883
BfmI	CTRYAG	3 cut(s)	630, 2065, 2413
BisI	GCNGC	7 cut(s)	222, 231, 586, 1036, 1227, 1708, 2734
BlnI	CCTAGG	1 cut(s)	2314
BlpI	GCTNAGC	1 cut(s)	2504
BlsI	GCNGC	7 cut(s)	223, 232, 587, 1037, 1228, 1709, 2735
BmcAI	AGTACT	2 cut(s)	1367, 2635
Bme1390I	CCNGG	9 cut(s)	324, 416, 429, 601, 732, 930, 1157, 1193, 1395
Bme18I	GGWCC	4 cut(s)	140, 614, 647, 1153
BmeT110I	CYCGRG	2 cut(s)	1113, 1369
BmgBI	CACGTC	1 cut(s)	462
BmgT120I	GGNCC	8 cut(s)	140, 583, 604, 614, 647, 1153, 1400, 2409
BmiI	GGNNCC	8 cut(s)	25, 103, 213, 584, 605, 1154, 1190, 2410
BmrFI	CCNGG	9 cut(s)	324, 416, 429, 601, 732, 930, 1157, 1193, 1395
BmrI	ACTGGG	1 cut(s)	697
BmsI	GCATC	4 cut(s)	181, 2145, 2474, 2754
BmuI	ACTGGG	1 cut(s)	697
BpiI	GAAGAC	6 cut(s)	1392, 1719, 1728, 1764, 2613, 2836
BplI	GAGNNNNNCTC	4 cut(s)	1406, 1438, 1505, 1537
BpmI	CTGGAG	3 cut(s)	821, 1416, 1728
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu1102I	GCTNAGC	1 cut(s)	2504
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	5 cut(s)	1408, 1580, 1787, 2327, 2456
BpuMI	CCSGG	3 cut(s)	416, 601, 1157
Bsa29I	ATCGAT	1 cut(s)	2304
BsaBI	GATNNNNATC	6 cut(s)	1122, 1176, 1379, 2220, 2337, 2430
BsaHI	GRCGYC	2 cut(s)	817, 1069
BsaWI	WCCGGW	1 cut(s)	2722
BsaXI	ACNNNNNCTCC	2 cut(s)	2780, 2810
Bsc4I	CCNNNNNNNGG	8 cut(s)	35, 362, 635, 935, 1162, 2079, 2628, 2867
Bse1I	ACTGG	8 cut(s)	349, 461, 544, 692, 804, 919, 1580, 2622
Bse3DI	GCAATG	5 cut(s)	490, 1447, 1483, 1713, 2774
Bse8I	GATNNNNATC	6 cut(s)	1122, 1176, 1379, 2220, 2337, 2430
BseAI	TCCGGA	1 cut(s)	2722
BseBI	CCWGG	6 cut(s)	324, 429, 732, 930, 1193, 1395
BseCI	ATCGAT	1 cut(s)	2304
BseGI	GGATG	6 cut(s)	953, 1878, 2160, 2182, 2769, 2832
BseJI	GATNNNNATC	6 cut(s)	1122, 1176, 1379, 2220, 2337, 2430
BseLI	CCNNNNNNNGG	8 cut(s)	35, 362, 635, 935, 1162, 2079, 2628, 2867
BseMI	GCAATG	5 cut(s)	490, 1447, 1483, 1713, 2774
BseMII	CTCAG	8 cut(s)	375, 900, 1503, 1703, 1785, 1989, 2495, 2594
BseNI	ACTGG	8 cut(s)	349, 461, 544, 692, 804, 919, 1580, 2622
BseRI	GAGGAG	5 cut(s)	771, 1307, 1469, 1928, 2477
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	6 cut(s)	208, 242, 1047, 1238, 1719, 2745
BseYI	CCCAGC	1 cut(s)	935
BsgI	GTGCAG	3 cut(s)	1512, 1689, 2818
Bsh1236I	CGCG	1 cut(s)	588
BshFI	GGCC	6 cut(s)	89, 414, 585, 606, 1401, 2411
BshNI	GGYRCC	2 cut(s)	101, 1188
BshVI	ATCGAT	1 cut(s)	2304
BsiHKAI	GWGCWC	3 cut(s)	532, 628, 2878
BsiHKCI	CYCGRG	2 cut(s)	1113, 1369
BsiSI	CCGG	5 cut(s)	62, 415, 600, 1156, 2723
BslFI	GGGAC	5 cut(s)	82, 651, 1166, 1459, 1578
BslI	CCNNNNNNNGG	8 cut(s)	35, 362, 635, 935, 1162, 2079, 2628, 2867
BsmAI	GTCTC	4 cut(s)	156, 447, 905, 2445
BsmFI	GGGAC	5 cut(s)	82, 651, 1166, 1459, 1578
BsmI	GAATGC	1 cut(s)	497
BsnI	GGCC	6 cut(s)	89, 414, 585, 606, 1401, 2411
BsoBI	CYCGRG	2 cut(s)	1113, 1369
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	6 cut(s)	28, 532, 628, 738, 925, 2878
Bsp13I	TCCGGA	1 cut(s)	2722
Bsp1407I	TGTACA	3 cut(s)	156, 2614, 2682
Bsp1720I	GCTNAGC	1 cut(s)	2504
BspACI	CCGC	7 cut(s)	348, 366, 405, 586, 588, 1031, 1144
BspANI	GGCC	6 cut(s)	89, 414, 585, 606, 1401, 2411
BspCNI	CTCAG	8 cut(s)	376, 901, 1504, 1702, 1786, 1990, 2496, 2593
BspDI	ATCGAT	1 cut(s)	2304
BspEI	TCCGGA	1 cut(s)	2722
BspFNI	CGCG	1 cut(s)	588
BspLI	GGNNCC	8 cut(s)	25, 103, 213, 584, 605, 1154, 1190, 2410
BspMAI	CTGCAG	1 cut(s)	2069
BspPI	GGATC	6 cut(s)	206, 219, 347, 1185, 1347, 1915
BspQI	GCTCTTC	2 cut(s)	930, 2883
BspT104I	TTCGAA	1 cut(s)	32
BspT107I	GGYRCC	2 cut(s)	101, 1188
BsrBI	CCGCTC	1 cut(s)	1031
BsrDI	GCAATG	5 cut(s)	490, 1447, 1483, 1713, 2774
BsrGI	TGTACA	3 cut(s)	156, 2614, 2682
BsrI	ACTGG	8 cut(s)	349, 461, 544, 692, 804, 919, 1580, 2622
BssNI	GRCGYC	2 cut(s)	817, 1069
BssT1I	CCWWGG	2 cut(s)	2314, 2627
Bst2UI	CCWGG	6 cut(s)	324, 429, 732, 930, 1193, 1395
Bst4CI	ACNGT	3 cut(s)	199, 1462, 2796
Bst6I	CTCTTC	2 cut(s)	930, 2883
BstACI	GRCGYC	2 cut(s)	817, 1069
BstAPI	GCANNNNNTGC	3 cut(s)	714, 1685, 2764
BstAUI	TGTACA	3 cut(s)	156, 2614, 2682
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	6 cut(s)	87, 906, 942, 1033, 1187, 2529
BstDSI	CCRYGG	3 cut(s)	502, 586, 607
BstF5I	GGATG	6 cut(s)	953, 1878, 2160, 2182, 2769, 2832
BstFNI	CGCG	1 cut(s)	588
BstMAI	GTCTC	4 cut(s)	156, 447, 905, 2445
BstNI	CCWGG	6 cut(s)	324, 429, 732, 930, 1193, 1395
BstNSI	RCATGY	2 cut(s)	221, 2621
BstSCI	CCNGG	9 cut(s)	322, 414, 427, 599, 730, 928, 1155, 1191, 1393
BstSFI	CTRYAG	3 cut(s)	630, 2065, 2413
BstSLI	GKGCMC	1 cut(s)	738
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	6 cut(s)	208, 242, 1047, 1238, 1719, 2745
BstV2I	GAAGAC	6 cut(s)	1392, 1719, 1728, 1764, 2613, 2836
BstX2I	RGATCY	2 cut(s)	211, 1352
BstXI	CCANNNNNNTGG	3 cut(s)	150, 657, 1265
BstYI	RGATCY	2 cut(s)	211, 1352
Bsu15I	ATCGAT	1 cut(s)	2304
BsuRI	GGCC	6 cut(s)	89, 414, 585, 606, 1401, 2411
BsuTUI	ATCGAT	1 cut(s)	2304
BtgI	CCRYGG	3 cut(s)	502, 586, 607
BtrI	CACGTC	1 cut(s)	462
BtsCI	GGATG	6 cut(s)	953, 1878, 2160, 2182, 2769, 2832
Cac8I	GCNNGC	6 cut(s)	87, 906, 942, 1033, 1187, 2529
CaiI	CAGNNNCTG	2 cut(s)	935, 2387
Cfr13I	GGNCC	8 cut(s)	140, 583, 604, 614, 647, 1153, 1400, 2409
Cfr42I	CCGCGG	1 cut(s)	589
ClaI	ATCGAT	1 cut(s)	2304
CseI	GACGC	1 cut(s)	1058
CsiI	ACCWGGT	1 cut(s)	1191
CspCI	CAANNNNNGTGG	6 cut(s)	502, 537, 727, 762, 2674, 2709
CviAII	CATG	9 cut(s)	218, 263, 391, 438, 1581, 2030, 2198, 2618, 2867
DrdI	GACNNNNNNGTC	1 cut(s)	645
DseDI	GACNNNNNNGTC	1 cut(s)	645
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	930, 2883
EarI	CTCTTC	2 cut(s)	930, 2883
EciI	GGCGGA	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	2876
Eco130I	CCWWGG	2 cut(s)	2314, 2627
Eco24I	GRGCYC	3 cut(s)	28, 925, 2878
Eco32I	GATATC	1 cut(s)	2325
Eco47I	GGWCC	4 cut(s)	140, 614, 647, 1153
Eco53kI	GAGCTC	1 cut(s)	2876
Eco57I	CTGAAG	3 cut(s)	852, 893, 2830
Eco88I	CYCGRG	2 cut(s)	1113, 1369
EcoICRI	GAGCTC	1 cut(s)	2876
EcoO109I	RGGNCCY	2 cut(s)	1400, 2409
EcoRI	GAATTC	1 cut(s)	1693
EcoRII	CCWGG	6 cut(s)	322, 427, 730, 928, 1191, 1393
EcoRV	GATATC	1 cut(s)	2325
EcoT14I	CCWWGG	2 cut(s)	2314, 2627
EcoT38I	GRGCYC	3 cut(s)	28, 925, 2878
ErhI	CCWWGG	2 cut(s)	2314, 2627
FaeI	CATG	9 cut(s)	221, 266, 394, 441, 1584, 2033, 2201, 2621, 2870
FalI	AAGNNNNNCTT	2 cut(s)	1810, 1842
FaqI	GGGAC	5 cut(s)	82, 651, 1166, 1459, 1578
FatI	CATG	9 cut(s)	217, 262, 390, 437, 1580, 2029, 2197, 2617, 2866
FauI	CCCGC	2 cut(s)	1024, 1137
FauNDI	CATATG	2 cut(s)	205, 1309
FbaI	TGATCA	2 cut(s)	2332, 2650
FblI	GTMKAC	1 cut(s)	1653
Fnu4HI	GCNGC	7 cut(s)	222, 231, 586, 1036, 1227, 1708, 2734
FokI	GGATG	6 cut(s)	960, 1865, 2167, 2189, 2776, 2839
FriOI	GRGCYC	3 cut(s)	28, 925, 2878
Fsp4HI	GCNGC	7 cut(s)	222, 231, 586, 1036, 1227, 1708, 2734
FspBI	CTAG	5 cut(s)	1595, 1983, 2315, 2391, 2883
GluI	GCNGC	7 cut(s)	222, 231, 586, 1036, 1227, 1708, 2734
GsaI	CCCAGC	1 cut(s)	939
GsuI	CTGGAG	3 cut(s)	821, 1416, 1728
HaeIII	GGCC	6 cut(s)	89, 414, 585, 606, 1401, 2411
HapII	CCGG	5 cut(s)	62, 415, 600, 1156, 2723
HgaI	GACGC	1 cut(s)	1058
Hin1I	GRCGYC	2 cut(s)	817, 1069
Hin1II	CATG	9 cut(s)	221, 266, 394, 441, 1584, 2033, 2201, 2621, 2870
HincII	GTYRAC	2 cut(s)	490, 595
HindII	GTYRAC	2 cut(s)	490, 595
HpaII	CCGG	5 cut(s)	62, 415, 600, 1156, 2723
HphI	GGTGA	5 cut(s)	362, 431, 2319, 2330, 2435
Hpy166II	GTNNAC	5 cut(s)	140, 490, 595, 1654, 2378
Hpy188I	TCNGA	9 cut(s)	468, 1692, 1699, 1766, 1906, 1999, 2337, 2541, 2817
Hpy8I	GTNNAC	5 cut(s)	140, 490, 595, 1654, 2378
Hpy99I	CGWCG	4 cut(s)	819, 822, 1074, 1735
HpyAV	CCTTC	3 cut(s)	39, 1005, 2803
HpyCH4III	ACNGT	3 cut(s)	199, 1462, 2796
HpyCH4IV	ACGT	3 cut(s)	461, 817, 1018
HpySE526I	ACGT	3 cut(s)	461, 817, 1018
Hsp92I	GRCGYC	2 cut(s)	817, 1069
Hsp92II	CATG	9 cut(s)	221, 266, 394, 441, 1584, 2033, 2201, 2621, 2870
Kpn2I	TCCGGA	1 cut(s)	2722
KpnI	GGTACC	1 cut(s)	105
Ksp22I	TGATCA	2 cut(s)	2332, 2650
KspI	CCGCGG	1 cut(s)	589
LguI	GCTCTTC	2 cut(s)	930, 2883
LmnI	GCTCC	2 cut(s)	23, 631
Lsp1109I	GCAGC	6 cut(s)	208, 242, 1047, 1238, 1719, 2745
LweI	GCATC	4 cut(s)	181, 2145, 2474, 2754
MabI	ACCWGGT	1 cut(s)	1191
MaeI	CTAG	5 cut(s)	1595, 1983, 2315, 2391, 2883
MaeII	ACGT	3 cut(s)	461, 817, 1018
MaeIII	GTNAC	8 cut(s)	169, 199, 773, 1233, 1433, 1797, 1985, 2593
MbiI	CCGCTC	1 cut(s)	1031
MflI	RGATCY	2 cut(s)	211, 1352
MhlI	GDGCHC	6 cut(s)	28, 532, 628, 738, 925, 2878
MlyI	GAGTC	8 cut(s)	302, 590, 633, 1560, 1625, 1805, 2443, 2447
MmeI	TCCRAC	1 cut(s)	2766
MroI	TCCGGA	1 cut(s)	2722
MroXI	GAANNNNTTC	1 cut(s)	1554
MseI	TTAA	5 cut(s)	246, 684, 1263, 1782, 2832
MslI	CAYNNNNRTG	4 cut(s)	267, 1242, 1263, 1488
MspA1I	CMGCKG	2 cut(s)	233, 588
MspI	CCGG	5 cut(s)	62, 415, 600, 1156, 2723
MspR9I	CCNGG	9 cut(s)	324, 416, 429, 601, 732, 930, 1157, 1193, 1395
Mva1269I	GAATGC	1 cut(s)	497
MvaI	CCWGG	6 cut(s)	324, 429, 732, 930, 1193, 1395
MvnI	CGCG	1 cut(s)	588
NciI	CCSGG	3 cut(s)	416, 601, 1157
NdeI	CATATG	2 cut(s)	205, 1309
NlaIII	CATG	9 cut(s)	221, 266, 394, 441, 1584, 2033, 2201, 2621, 2870
NlaIV	GGNNCC	8 cut(s)	25, 103, 213, 584, 605, 1154, 1190, 2410
NmuCI	GTSAC	5 cut(s)	169, 199, 1233, 1797, 1985
NspI	RCATGY	2 cut(s)	221, 2621
NspV	TTCGAA	1 cut(s)	32
OliI	CACNNNNGTG	1 cut(s)	1242
PasI	CCCWGGG	1 cut(s)	323
PciSI	GCTCTTC	2 cut(s)	930, 2883
PcsI	WCGNNNNNNNCGW	1 cut(s)	1730
PctI	GAATGC	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	1554
PfeI	GAWTC	6 cut(s)	1449, 1637, 2109, 2338, 2384, 2536
PflMI	CCANNNNNTGG	3 cut(s)	362, 935, 2867
PkrI	GCNGC	7 cut(s)	223, 232, 587, 1037, 1228, 1709, 2735
PleI	GAGTC	8 cut(s)	301, 590, 633, 1560, 1624, 1804, 2443, 2446
PpsI	GAGTC	8 cut(s)	301, 590, 633, 1560, 1624, 1804, 2443, 2446
PshBI	ATTAAT	1 cut(s)	1263
PsiI	TTATAA	1 cut(s)	2231
Psp124BI	GAGCTC	1 cut(s)	2878
Psp6I	CCWGG	6 cut(s)	322, 427, 730, 928, 1191, 1393
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	6 cut(s)	322, 427, 730, 928, 1191, 1393
PspN4I	GGNNCC	8 cut(s)	25, 103, 213, 584, 605, 1154, 1190, 2410
PspPI	GGNCC	8 cut(s)	140, 583, 604, 614, 647, 1153, 1400, 2409
PstI	CTGCAG	1 cut(s)	2069
PstNI	CAGNNNCTG	2 cut(s)	935, 2387
PsuI	RGATCY	2 cut(s)	211, 1352
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	4 cut(s)	267, 1242, 1263, 1488
SacI	GAGCTC	1 cut(s)	2878
SacII	CCGCGG	1 cut(s)	589
SapI	GCTCTTC	2 cut(s)	930, 2883
SaqAI	TTAA	5 cut(s)	246, 684, 1263, 1782, 2832
SatI	GCNGC	7 cut(s)	222, 231, 586, 1036, 1227, 1708, 2734
Sau96I	GGNCC	8 cut(s)	140, 583, 604, 614, 647, 1153, 1400, 2409
ScaI	AGTACT	2 cut(s)	1367, 2635
SchI	GAGTC	8 cut(s)	302, 590, 633, 1560, 1625, 1805, 2443, 2447
ScrFI	CCNGG	9 cut(s)	324, 416, 429, 601, 732, 930, 1157, 1193, 1395
SduI	GDGCHC	6 cut(s)	28, 532, 628, 738, 925, 2878
SexAI	ACCWGGT	1 cut(s)	1191
SfaNI	GCATC	4 cut(s)	181, 2145, 2474, 2754
SfcI	CTRYAG	3 cut(s)	630, 2065, 2413
Sfr303I	CCGCGG	1 cut(s)	589
SfuI	TTCGAA	1 cut(s)	32
SgrBI	CCGCGG	1 cut(s)	589
SinI	GGWCC	4 cut(s)	140, 614, 647, 1153
SmiMI	CAYNNNNRTG	4 cut(s)	267, 1242, 1263, 1488
SmlI	CTYRAG	5 cut(s)	1423, 1559, 1802, 2342, 2435
SmoI	CTYRAG	5 cut(s)	1423, 1559, 1802, 2342, 2435
SpeI	ACTAGT	2 cut(s)	1594, 1982
SsiI	CCGC	7 cut(s)	348, 366, 405, 586, 588, 1031, 1144
SspI	AATATT	1 cut(s)	95
SspMI	CTAG	5 cut(s)	1595, 1983, 2315, 2391, 2883
SstI	GAGCTC	1 cut(s)	2878
StyD4I	CCNGG	9 cut(s)	322, 414, 427, 599, 730, 928, 1155, 1191, 1393
StyI	CCWWGG	2 cut(s)	2314, 2627
TaaI	ACNGT	3 cut(s)	199, 1462, 2796
TaiI	ACGT	3 cut(s)	464, 820, 1021
TatI	WGTACW	6 cut(s)	156, 1365, 2121, 2614, 2633, 2682
TauI	GCSGC	1 cut(s)	588
TfiI	GAWTC	6 cut(s)	1449, 1637, 2109, 2338, 2384, 2536
Tru1I	TTAA	5 cut(s)	246, 684, 1263, 1782, 2832
Tru9I	TTAA	5 cut(s)	246, 684, 1263, 1782, 2832
TseFI	GTSAC	5 cut(s)	169, 199, 1233, 1797, 1985
TseI	GCWGC	6 cut(s)	221, 230, 1035, 1226, 1707, 2733
Tsp45I	GTSAC	5 cut(s)	169, 199, 1233, 1797, 1985
TspGWI	ACGGA	1 cut(s)	491
Van91I	CCANNNNNTGG	3 cut(s)	362, 935, 2867
VpaK11BI	GGWCC	4 cut(s)	140, 614, 647, 1153
VspI	ATTAAT	1 cut(s)	1263
XapI	RAATTY	7 cut(s)	147, 881, 1517, 1693, 1953, 2354, 2752
XceI	RCATGY	2 cut(s)	221, 2621
XmaJI	CCTAGG	1 cut(s)	2314
XmiI	GTMKAC	1 cut(s)	1653
XmnI	GAANNNNTTC	1 cut(s)	1554
XspI	CTAG	5 cut(s)	1595, 1983, 2315, 2391, 2883
ZraI	GACGTC	1 cut(s)	818
ZrmI	AGTACT	2 cut(s)	1367, 2635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.