Prupe.1G344900_v2.0.a1

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
32287372 .. 32290741
3370 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G344900.2

Sequence Viewer

Length: 1647 bp
ATGTCACAACTATCTGATTTTCAAATCCACATTAATGGTCAGCAAACATTCTTTGTGAATGAGGAGATTTTATCAACATATTCAGGAAGGTTGAAGAAGATCATCAAGCAGGAAAGGAGAAGGACCCAGATCAAGAATTCAGGGATTGAAATCGATGACTTCCCAGGAGGCCCTGATGGGTTCGAGTTGATTTCTCGATTCTGTTACAACAACGGAAGAATCACAACCACAGTTTCAAATGTGTCCCTCCTCCACTGCTGTGCAGTCTACCTTGGTATGACTGAGAAGCTCTCAACTTGCAATCTATTGCAGCAAACACAAGTCTTTCTTGATGGACTTTTTGAGTGGTCATGGAAAGACATACTAGTCTGCCTCAAGAGCTGCGGCTCATTCTGCAACTATGCTGATTCATCTGGTCTGCTAGACAAACTCATTTGTGCTCTGTTGGCTAAGATTGCTCAAAATTCAGATATAAGCAGCTTCATTGCCGCGTCGTCTTCTACGTCCTCTTCTCCAGAAACTGCATCTGGGTTTAGACCCTCTTCCTCATATAAGAACACCCCTGAATCAATCAAGCCAAGCTCATCAAGCAGAGCCTGGTGGTTTGATGATGTGGCCATTTTACCACCAAAGATCATTGAAAAACTCTTCCAGAGTTTGGGTGCTTATGGAGCTGATAACAACAGCTTGATCCTCACAAGATTTCTCCTTCATTACCTGAAAGTTTCAGCTCAGAGGAAAGCTAATTATAATCAGACATCATCAGCTGCTGTGAATTCAAAATGTGAGTTTGGTGGTCTTGCGGACACAGCTGTTCATGGGATCATTTTGGTTGGGAGAAAAACGTTTTCCTGCAGAGCGCTGTTTTGGGTATTGAGGATTGTGTCTGGCTTTGGACTGAGTAAAGAGTACAGGCTTGGTTTGGAAAGATTGATTGGTGGAATGCTTGATGAAGCAACATTGGATGACTTGCTAGTGTCTGGGCATGACAGGGGTGTTTATGATGTCAATCTTGTGATAAGATTGATAAGAGTGTTTGTTAAAAGTGAAGGAGTGTCAGTGCAGAAGTTGAAGATAGCCGGGAGATTGATTGATAAGTACTTGGGTGAAATATCCCCTGATCAGAATCTCAAGATTTCTAAATTTTTGGGAGTTGCAGAGAGTTTACCTGATTCTGCCAGGGATTGCTTTGACGGGGCCTACAGAGCCATTGATATCTATCTTGAGTCTCATCCTAGTCTTTCATTTGAGGAGCGGTCAAGATTATGCAGATGCCTAAACTATGAAAAGCTGAGCCTTGGAGCATGTAAAGAGCTTGCCAAGAATCCAAAAATCCCACCAAGGGTTGCCATGCAAGCCCTTATGTCTCAACAATCCAAAATAACACCACCAACACCAAAACCAAAACCAAAACAACAATGTGTAAATTATGAAATGATTGTGTACAAGGGTGATGCTGATGATGAAGAGAGCTTAGCAGAAGAAGGGAAGATGGAAGAAACACTAAACTTGCAGAGGATGCAATGGAGGGTGGTGGAGTTAGAGAAACTGTGCAGGCAAATGAAGGGGCAGATGTCAAGGATGGTGAAGCATAATCATGTTTTGGCTACCCCAACTCATGCTAGACCTCTGCCTAGACTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

549

Amino Acids

61.27

Weight (kDa)

8.76

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AasI GACNNNNNNGTC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 658
AccBSI CCGCTC 1 cut(s) 1255
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 491
AciI CCGC 4 cut(s) 384, 489, 803, 1255
AclI AACGTT 1 cut(s) 845
AclWI GGATC 2 cut(s) 685, 830
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 4 cut(s) 136, 463, 775, 1142
AfaI GTAC 3 cut(s) 911, 1100, 1445
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 2 cut(s) 658, 1342
AgsI TTSAA 7 cut(s) 23, 94, 149, 237, 641, 780, 1072
AhlI ACTAGT 1 cut(s) 364
AjnI CCWGG 3 cut(s) 163, 596, 1178
AjuI GAANNNNNNNTTGG 2 cut(s) 918, 950
AleI CACNNNNGTG 1 cut(s) 258
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 2 cut(s) 1233, 1371
AlwI GGATC 2 cut(s) 685, 830
AlwNI CAGNNNCTG 3 cut(s) 521, 597, 770
Aor51HI AGCGCT 1 cut(s) 861
AoxI GGCC 3 cut(s) 169, 615, 1197
ApeKI GCWGC 4 cut(s) 310, 381, 477, 767
ApoI RAATTY 4 cut(s) 136, 463, 775, 1142
AseI ATTAAT 1 cut(s) 33
AspLEI GCGC 1 cut(s) 862
AspS9I GGNCC 3 cut(s) 123, 170, 1197
AsuC2I CCSGG 1 cut(s) 1081
AsuHPI GGTGA 3 cut(s) 1118, 1463, 1597
AvaII GGWCC 1 cut(s) 123
BalI TGGCCA 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 4 cut(s) 322, 368, 489, 754
BccI CCATC 4 cut(s) 170, 326, 1486, 1576
BciT130I CCWGG 3 cut(s) 165, 598, 1180
BclI TGATCA 1 cut(s) 1120
BcnI CCSGG 1 cut(s) 1081
BcoDI GTCTC 2 cut(s) 1233, 1371
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 6 cut(s) 365, 422, 974, 1236, 1623, 1635
BfmI CTRYAG 2 cut(s) 853, 1201
BfoI RGCGCY 1 cut(s) 863
BisI GCNGC 6 cut(s) 311, 382, 385, 478, 489, 768
BlpI GCTNAGC 2 cut(s) 1292, 1474
BlsI GCNGC 6 cut(s) 312, 383, 386, 479, 490, 769
BmcAI AGTACT 1 cut(s) 1100
Bme1390I CCNGG 4 cut(s) 165, 598, 1081, 1180
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 3 cut(s) 123, 170, 1197
BmiI GGNNCC 2 cut(s) 125, 1198
BmrFI CCNGG 4 cut(s) 165, 598, 1081, 1180
BmsI GCATC 4 cut(s) 533, 1262, 1444, 1509
BpiI GAAGAC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpmI CTGGAG 1 cut(s) 498
Bpu1102I GCTNAGC 2 cut(s) 1292, 1474
BpuEI CTTGAG 3 cut(s) 359, 1115, 1244
BpuMI CCSGG 1 cut(s) 1081
Bsa29I ATCGAT 1 cut(s) 153
BsaBI GATNNNNATC 4 cut(s) 149, 1008, 1125, 1218
BsaJI CCNNGG 5 cut(s) 163, 271, 1179, 1297, 1340
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 2 cut(s) 658, 1342
Bse3DI GCAATG 2 cut(s) 483, 1529
Bse8I GATNNNNATC 4 cut(s) 149, 1008, 1125, 1218
BseBI CCWGG 3 cut(s) 165, 598, 1180
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 5 cut(s) 163, 271, 1179, 1297, 1340
BseGI GGATG 4 cut(s) 970, 1231, 1524, 1587
BseJI GATNNNNATC 4 cut(s) 149, 1008, 1125, 1218
BseLI CCNNNNNNNGG 2 cut(s) 658, 1342
BseMI GCAATG 2 cut(s) 483, 1529
BseMII CTCAG 4 cut(s) 273, 746, 890, 1283
BseRI GAGGAG 3 cut(s) 77, 239, 1265
BseXI GCAGC 4 cut(s) 322, 368, 489, 754
BsgI GTGCAG 3 cut(s) 282, 1082, 1573
Bsh1236I CGCG 1 cut(s) 491
BshFI GGCC 3 cut(s) 171, 617, 1199
BshVI ATCGAT 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 1080
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 658, 1342
BsmAI GTCTC 2 cut(s) 1233, 1371
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 3 cut(s) 171, 617, 1199
Bsp1286I GDGCHC 1 cut(s) 442
Bsp1407I TGTACA 1 cut(s) 1443
Bsp143I GATC 6 cut(s) 99, 129, 633, 690, 822, 1120
Bsp1720I GCTNAGC 2 cut(s) 1292, 1474
BspACI CCGC 4 cut(s) 384, 489, 803, 1255
BspANI GGCC 3 cut(s) 171, 617, 1199
BspCNI CTCAG 4 cut(s) 274, 745, 891, 1284
BspDI ATCGAT 1 cut(s) 153
BspFNI CGCG 1 cut(s) 491
BspLI GGNNCC 2 cut(s) 125, 1198
BspMAI CTGCAG 1 cut(s) 857
BspPI GGATC 2 cut(s) 685, 830
BsrBI CCGCTC 1 cut(s) 1255
BsrDI GCAATG 2 cut(s) 483, 1529
BsrGI TGTACA 1 cut(s) 1443
BssECI CCNNGG 5 cut(s) 163, 271, 1179, 1297, 1340
BssMI GATC 6 cut(s) 99, 129, 633, 690, 822, 1120
BssT1I CCWWGG 3 cut(s) 271, 1297, 1340
Bst2UI CCWGG 3 cut(s) 165, 598, 1180
Bst4CI ACNGT 2 cut(s) 232, 1551
Bst6I CTCTTC 4 cut(s) 514, 547, 653, 1461
BstAPI GCANNNNNTGC 1 cut(s) 1519
BstAUI TGTACA 1 cut(s) 1443
BstC8I GCNNGC 3 cut(s) 1317, 1356, 1556
BstDEI CTNAG 6 cut(s) 282, 450, 732, 899, 1292, 1474
BstF5I GGATG 4 cut(s) 970, 1231, 1524, 1587
BstFNI CGCG 1 cut(s) 491
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 6 cut(s) 102, 132, 636, 693, 825, 1123
BstMAI GTCTC 2 cut(s) 1233, 1371
BstMBI GATC 6 cut(s) 99, 129, 633, 690, 822, 1120
BstNI CCWGG 3 cut(s) 165, 598, 1180
BstNSI RCATGY 1 cut(s) 1308
BstSCI CCNGG 4 cut(s) 163, 596, 1079, 1178
BstSFI CTRYAG 2 cut(s) 853, 1201
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 4 cut(s) 322, 368, 489, 754
BstV2I GAAGAC 1 cut(s) 489
BstXI CCANNNNNNTGG 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 3 cut(s) 171, 617, 1199
BsuTUI ATCGAT 1 cut(s) 153
BtsCI GGATG 4 cut(s) 970, 1231, 1524, 1587
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 253, 1065
Cac8I GCNNGC 3 cut(s) 1317, 1356, 1556
CaiI CAGNNNCTG 3 cut(s) 521, 597, 770
CfoI GCGC 1 cut(s) 862
Cfr13I GGNCC 3 cut(s) 123, 170, 1197
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 1 cut(s) 480
Csp6I GTAC 3 cut(s) 910, 1099, 1444
CviAII CATG 7 cut(s) 351, 818, 986, 1305, 1351, 1598, 1619
CviQI GTAC 3 cut(s) 910, 1099, 1444
DdeI CTNAG 6 cut(s) 282, 450, 732, 899, 1292, 1474
DpnI GATC 6 cut(s) 101, 131, 635, 692, 824, 1122
DpnII GATC 6 cut(s) 99, 129, 633, 690, 822, 1120
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 4 cut(s) 514, 547, 653, 1461
EarI CTCTTC 4 cut(s) 514, 547, 653, 1461
Eco130I CCWWGG 3 cut(s) 271, 1297, 1340
Eco32I GATATC 1 cut(s) 1216
Eco47I GGWCC 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 861
EcoO109I RGGNCCY 3 cut(s) 123, 170, 1197
EcoRI GAATTC 2 cut(s) 136, 775
EcoRII CCWGG 3 cut(s) 163, 596, 1178
EcoRV GATATC 1 cut(s) 1216
EcoT14I CCWWGG 3 cut(s) 271, 1297, 1340
ErhI CCWWGG 3 cut(s) 271, 1297, 1340
FaeI CATG 7 cut(s) 354, 821, 989, 1308, 1354, 1601, 1622
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 229
FatI CATG 7 cut(s) 350, 817, 985, 1304, 1350, 1597, 1618
FbaI TGATCA 1 cut(s) 1120
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 6 cut(s) 311, 382, 385, 478, 489, 768
FokI GGATG 4 cut(s) 977, 1218, 1531, 1594
Fsp4HI GCNGC 6 cut(s) 311, 382, 385, 478, 489, 768
FspBI CTAG 6 cut(s) 365, 422, 974, 1236, 1623, 1635
GlaI GCGC 1 cut(s) 861
GluI GCNGC 6 cut(s) 311, 382, 385, 478, 489, 768
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 3 cut(s) 171, 617, 1199
HapII CCGG 1 cut(s) 1080
HgaI GACGC 1 cut(s) 480
HhaI GCGC 1 cut(s) 862
Hin1II CATG 7 cut(s) 354, 821, 989, 1308, 1354, 1601, 1622
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HinfI GANTC 8 cut(s) 198, 219, 407, 566, 1126, 1172, 1226, 1324
HpaII CCGG 1 cut(s) 1080
HphI GGTGA 3 cut(s) 1118, 1463, 1597
Hpy166II GTNNAC 3 cut(s) 268, 1166, 1444
Hpy188I TCNGA 5 cut(s) 16, 469, 735, 756, 1125
Hpy8I GTNNAC 3 cut(s) 268, 1166, 1444
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 6 cut(s) 81, 114, 719, 1043, 1478, 1558
HpyCH4III ACNGT 2 cut(s) 232, 1551
HpyCH4IV ACGT 2 cut(s) 503, 845
HpyF3I CTNAG 6 cut(s) 282, 450, 732, 899, 1292, 1474
HpySE526I ACGT 2 cut(s) 503, 845
Hsp92II CATG 7 cut(s) 354, 821, 989, 1308, 1354, 1601, 1622
HspAI GCGC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 6 cut(s) 99, 129, 633, 690, 822, 1120
LmnI GCTCC 3 cut(s) 671, 1252, 1301
Lsp1109I GCAGC 4 cut(s) 322, 368, 489, 754
LweI GCATC 4 cut(s) 533, 1262, 1444, 1509
MaeI CTAG 6 cut(s) 365, 422, 974, 1236, 1623, 1635
MaeII ACGT 2 cut(s) 503, 845
MaeIII GTNAC 2 cut(s) 3, 203
MalI GATC 6 cut(s) 101, 131, 635, 692, 824, 1122
MbiI CCGCTC 1 cut(s) 1255
MboI GATC 6 cut(s) 99, 129, 633, 690, 822, 1120
MhlI GDGCHC 1 cut(s) 442
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 6 cut(s) 136, 463, 745, 775, 1142, 1426
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 1 cut(s) 1235
Mox20I TGGCCA 1 cut(s) 617
MscI TGGCCA 1 cut(s) 617
MseI TTAA 2 cut(s) 33, 1041
MslI CAYNNNNRTG 3 cut(s) 33, 258, 1596
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 2 cut(s) 767, 812
MspI CCGG 1 cut(s) 1080
MspR9I CCNGG 4 cut(s) 165, 598, 1081, 1180
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 3 cut(s) 165, 598, 1180
MvnI CGCG 1 cut(s) 491
NciI CCSGG 1 cut(s) 1081
NdeII GATC 6 cut(s) 99, 129, 633, 690, 822, 1120
NlaIII CATG 7 cut(s) 354, 821, 989, 1308, 1354, 1601, 1622
NlaIV GGNNCC 2 cut(s) 125, 1198
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 1308
OliI CACNNNNGTG 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 500
PctI GAATGC 1 cut(s) 948
PfeI GAWTC 7 cut(s) 198, 219, 407, 566, 1126, 1172, 1324
PflMI CCANNNNNTGG 1 cut(s) 658
PkrI GCNGC 6 cut(s) 312, 383, 386, 479, 490, 769
PleI GAGTC 1 cut(s) 1234
PpsI GAGTC 1 cut(s) 1234
PpuMI RGGWCCY 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 33
PsiI TTATAA 1 cut(s) 750
Psp1406I AACGTT 1 cut(s) 845
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 3 cut(s) 163, 596, 1178
PspGI CCWGG 3 cut(s) 163, 596, 1178
PspN4I GGNNCC 2 cut(s) 125, 1198
PspPI GGNCC 3 cut(s) 123, 170, 1197
PspPPI RGGWCCY 1 cut(s) 123
PstI CTGCAG 1 cut(s) 857
PstNI CAGNNNCTG 3 cut(s) 521, 597, 770
PvuII CAGCTG 2 cut(s) 767, 812
RsaI GTAC 3 cut(s) 911, 1100, 1445
RsaNI GTAC 3 cut(s) 910, 1099, 1444
RseI CAYNNNNRTG 3 cut(s) 33, 258, 1596
SaqAI TTAA 2 cut(s) 33, 1041
SatI GCNGC 6 cut(s) 311, 382, 385, 478, 489, 768
Sau3AI GATC 6 cut(s) 99, 129, 633, 690, 822, 1120
Sau96I GGNCC 3 cut(s) 123, 170, 1197
ScaI AGTACT 1 cut(s) 1100
SchI GAGTC 1 cut(s) 1235
ScrFI CCNGG 4 cut(s) 165, 598, 1081, 1180
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 4 cut(s) 533, 1262, 1444, 1509
SfcI CTRYAG 2 cut(s) 853, 1201
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 3 cut(s) 33, 258, 1596
SmlI CTYRAG 3 cut(s) 374, 1130, 1223
SmoI CTYRAG 3 cut(s) 374, 1130, 1223
SpeI ACTAGT 1 cut(s) 364
Sse9I AATT 6 cut(s) 136, 463, 745, 775, 1142, 1426
SsiI CCGC 4 cut(s) 384, 489, 803, 1255
SspMI CTAG 6 cut(s) 365, 422, 974, 1236, 1623, 1635
StyD4I CCNGG 4 cut(s) 163, 596, 1079, 1178
StyI CCWWGG 3 cut(s) 271, 1297, 1340
TaaI ACNGT 2 cut(s) 232, 1551
TaiI ACGT 2 cut(s) 506, 848
TaqI TCGA 3 cut(s) 153, 183, 196
TasI AATT 6 cut(s) 136, 463, 745, 775, 1142, 1426
TatI WGTACW 3 cut(s) 909, 1098, 1443
TauI GCSGC 2 cut(s) 387, 491
TfiI GAWTC 7 cut(s) 198, 219, 407, 566, 1126, 1172, 1324
Tru1I TTAA 2 cut(s) 33, 1041
Tru9I TTAA 2 cut(s) 33, 1041
TscAI CASTG 2 cut(s) 260, 1065
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 310, 381, 477, 767
Tsp45I GTSAC 1 cut(s) 3
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 2 cut(s) 260, 1065
Van91I CCANNNNNTGG 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 123
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 4 cut(s) 136, 463, 775, 1142
XceI RCATGY 1 cut(s) 1308
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 6 cut(s) 365, 422, 974, 1236, 1623, 1635
ZrmI AGTACT 1 cut(s) 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.