Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007978

Physical Location & Seq

Genomic Coordinates Forward (+)

336660 .. 338389

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTAAAAGTGTTTGTTAATGGTGAGGGAGTTTCAGTGCAGAGGTTGAAGAAAGCTGGGAGGTTGGTTGATAAGTACTTGGGTGAAATATCACCTGATCAGAATCTCAAGATTTCTAAGTTTCTGGGAGTTGCAGAGAGCTTGCCAGATTCTGCCAGGGACTGCTTTGATTGGGTCTACAGAGCCATTGATATCTATCTTGAGGCTCATCCAAATCTTTCGTTCGAAGAGCGGTCGAGATTATGCAGATGCTTGAATTATGAGAAGCTGAGCTTAGAAACATGTAAAGAGCTTGCCAAGAATCCTAAAATCCCACCAAGGGTTGCTATTCAAGCGCTTATTTCTCAAAACTCCAAAATAACACCACCACCACCACCTACACCGCGAAAACTAGTTGTAAATCAGAGTCAGCATTTCTGTTCCGATATTGTTTTGTACAAGGACGGGGGTGCGGGAGAAGAGAGCTCGGCGGAAGAGGATTCGATGTCGTTAGACTTGCAGAGGATGCAATGGAGGGTGGTGGAGTTGGAGAAACTGTGCAGGCAAATGAAGGGGCAAATGTCAAGGATGGTAAAACACAATGTCTTGACTGCCACTCCAACTCACAGCAGAGCTCTGCCTAGACTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

8.95

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19850
fragaria_vesca	FvH4_4g36690 FvH4_4g36690
malus_domestica	MD13G1008200.v1.1
prunus_persica	Prupe.1G344900_v2.0.a1 Prupe.1G344900_v2.0.a1
pyrus_communis	pycom05g06860 pycom07g12620 pycom13g00670 pycom16g00540 pycom16g00550 pycom16g04040
rosa_chinensis	RchiOBHm_Chr4g0446401
rosa_laevigata	RLG00000005664
rosa_multiflora	Rmu_sc0008360.1_g000004 Rmu_sc0010778.1_g000006 Rmu_sc0018598.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386840
rosa_rugosa	Rorug04G0371100
rosa_samantha	Rh4AG432600 Rh4BG441800 Rh4CG459100 Rh4DG440500
rosa_wichuraiana	Rw4G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	385
AciI	CCGC	4 cut(s)	232, 383, 452, 470
AfaI	GTAC	2 cut(s)	77, 437
AfeI	AGCGCT	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	49, 256, 332
AhlI	ACTAGT	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	7 cut(s)	56, 141, 268, 273, 292, 465, 614
AluI	AGCT	7 cut(s)	56, 141, 268, 273, 292, 465, 614
Alw21I	GWGCWC	2 cut(s)	467, 616
AlwNI	CAGNNNCTG	2 cut(s)	152, 162
Aor51HI	AGCGCT	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	35, 84, 95
AsuII	TTCGAA	1 cut(s)	225
BanII	GRGCYC	2 cut(s)	467, 616
Bbv12I	GWGCWC	2 cut(s)	467, 616
BccI	CCATC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	157
BclI	TGATCA	1 cut(s)	97
BcuI	ACTAGT	1 cut(s)	391
BfaI	CTAG	2 cut(s)	392, 621
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	338
BlpI	GCTNAGC	1 cut(s)	269
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	239, 495
Bpu1102I	GCTNAGC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	92, 221
BsaBI	GATNNNNATC	2 cut(s)	102, 195
BsaJI	CCNNGG	2 cut(s)	156, 317
BsaXI	ACNNNNNCTCC	6 cut(s)	21, 51, 521, 551, 580, 610
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	515
Bse8I	GATNNNNATC	2 cut(s)	102, 195
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	2 cut(s)	156, 317
BseGI	GGATG	3 cut(s)	208, 510, 573
BseJI	GATNNNNATC	2 cut(s)	102, 195
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	260
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	2 cut(s)	59, 559
Bsh1236I	CGCG	1 cut(s)	385
Bsh1285I	CGRYCG	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	467, 616
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	467, 616
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	97
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	4 cut(s)	232, 383, 452, 470
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	225
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	515
BsrGI	TGTACA	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	156, 317
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	537
Bst6I	CTCTTC	3 cut(s)	222, 453, 468
BstAPI	GCANNNNNTGC	1 cut(s)	505
BstAUI	TGTACA	1 cut(s)	435
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	143, 294, 542
BstDEI	CTNAG	3 cut(s)	117, 269, 274
BstF5I	GGATG	3 cut(s)	208, 510, 573
BstFNI	CGCG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 505
BstNI	CCWGG	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	208, 510, 573
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	143, 294, 542
CaiI	CAGNNNCTG	2 cut(s)	152, 162
CfoI	GCGC	1 cut(s)	337
Csp6I	GTAC	2 cut(s)	76, 436
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	9 cut(s)	56, 141, 185, 206, 268, 273, 292, 465, 614
CviKI_1	RGCY	9 cut(s)	56, 141, 185, 206, 268, 273, 292, 465, 614
CviQI	GTAC	2 cut(s)	76, 436
DdeI	CTNAG	3 cut(s)	117, 269, 274
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	222, 453, 468
EarI	CTCTTC	3 cut(s)	222, 453, 468
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	2 cut(s)	465, 614
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	467, 616
Eco32I	GATATC	1 cut(s)	193
Eco47III	AGCGCT	1 cut(s)	336
Eco53kI	GAGCTC	2 cut(s)	465, 614
EcoICRI	GAGCTC	2 cut(s)	465, 614
EcoRII	CCWGG	1 cut(s)	155
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	2 cut(s)	467, 616
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	285
FaiI	YATR	3 cut(s)	244, 261, 283
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	281
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	177
FokI	GGATG	3 cut(s)	195, 517, 580
FriOI	GRGCYC	2 cut(s)	467, 616
FspBI	CTAG	2 cut(s)	392, 621
GlaI	GCGC	1 cut(s)	336
GsaI	CCCAGC	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	338
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	5 cut(s)	103, 149, 301, 406, 479
HphI	GGTGA	3 cut(s)	35, 84, 95
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	102, 405, 424
Hpy188III	TCNNGA	4 cut(s)	109, 200, 237, 586
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4V	TGCA	6 cut(s)	40, 134, 246, 499, 508, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 505
HpyF3I	CTNAG	3 cut(s)	117, 269, 274
Hsp92II	CATG	1 cut(s)	285
HspAI	GCGC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	222
LpnPI	CCDG	7 cut(s)	42, 108, 110, 142, 159, 169, 526
LweI	GCATC	2 cut(s)	239, 495
MaeI	CTAG	2 cut(s)	392, 621
MalI	GATC	1 cut(s)	99
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	61, 239, 470, 485
MhlI	GDGCHC	2 cut(s)	467, 616
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	507, 623
MnlI	CCTC	7 cut(s)	19, 36, 54, 196, 469, 495, 507
MseI	TTAA	2 cut(s)	5, 18
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	2 cut(s)	332, 505
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	285
NmeAIII	GCCGAG	1 cut(s)	446
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	225
PciI	ACATGT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	222
PfeI	GAWTC	4 cut(s)	103, 149, 301, 479
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PscI	ACATGT	1 cut(s)	281
Psp124BI	GAGCTC	2 cut(s)	467, 616
Psp6I	CCWGG	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	155
PstNI	CAGNNNCTG	2 cut(s)	152, 162
RsaI	GTAC	2 cut(s)	77, 437
RsaNI	GTAC	2 cut(s)	76, 436
SacI	GAGCTC	2 cut(s)	467, 616
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	5, 18
Sau3AI	GATC	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	2 cut(s)	467, 616
SfaNI	GCATC	2 cut(s)	239, 495
SfcI	CTRYAG	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	107, 200
SmoI	CTYRAG	2 cut(s)	107, 200
SpeI	ACTAGT	1 cut(s)	391
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	4 cut(s)	232, 383, 452, 470
SspMI	CTAG	2 cut(s)	392, 621
SstI	GAGCTC	2 cut(s)	467, 616
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	537
TaqI	TCGA	3 cut(s)	225, 236, 482
TasI	AATT	1 cut(s)	256
TatI	WGTACW	2 cut(s)	75, 435
TfiI	GAWTC	4 cut(s)	103, 149, 301, 479
Tru1I	TTAA	2 cut(s)	5, 18
Tru9I	TTAA	2 cut(s)	5, 18
TscAI	CASTG	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	42
XceI	RCATGY	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	392, 621
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.