MD13G1012800.v1.1

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0006954
Physical Location & Seq
Forward (+)
763511 .. 765071
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1012800.v1.1.491

Sequence Viewer

Length: 672 bp
ATGGGTGCATTTGGCCTTGAATGTACATTCGACAAAGTAATTGGGGAACTTAAGAATTATAGTGACTACTCTATCCATCGGCTTTTGCTGTATTATGGTGTCTCTGATAAGAAGGGATTGCTTCCAGACAAATATGCATTGCTTTCTTCAAAATCTCAGGCATTGGCTGAACTTCTTCCTTCACTGAAGCGAGCTGGGCATCGTGTTCTGATTTTCAGCCAGTGGACGTCAATGCTTGATGTTTTGGAGTGGACTTTGGATGTGATAGGTGTTACATACAGACGACTTGATGGAAGCGCTCAGGTGACAGAAAGACAGACGATAGTTGATACATTCAATAATGATACTTGTATATTTGCTTGCTTGCTGTCCACAAGAGCTGGAGGCCAGGGTTTGGACTTGGTTGGAGCTGATACCGTAGCTATTCATGATATGGATTTCAACCCGCAAATTGATCAACAGGTAGAAGATCGTTGCCATCGCATCGGCCAAGTGAAGCCTGTTACCATTTACAGGCTAGTCACTAAGGGTACAGTAGATGAAAATGTCTACGAGATTGTGAAAAGGAAGTTAGTGCTAGATGTTGCAGTCCTGAAATCTGGCGTGGAGATGGATAATGAAGGTGACACATCCACCATGGGAGATATATTATCGAAACTTTTGCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

224

Amino Acids

24.78

Weight (kDa)

5.24

Isoelectric Point (pI)

20.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 51 - 163 6.2e-23 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 394
AccI GTMKAC 1 cut(s) 549
AciI CCGC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 2 cut(s) 25, 532
AfeI AGCGCT 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 394, 513
AflII CTTAAG 1 cut(s) 50
AgsI TTSAA 4 cut(s) 20, 150, 337, 442
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 4 cut(s) 194, 380, 410, 422
AluI AGCT 4 cut(s) 194, 380, 410, 422
Alw26I GTCTC 1 cut(s) 106
Aor51HI AGCGCT 1 cut(s) 298
AoxI GGCC 3 cut(s) 13, 385, 487
Asp700I GAANNNNTTC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 316, 635
BccI CCATC 4 cut(s) 84, 284, 486, 604
BcgI CGANNNNNNTGC 1 cut(s) 643
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 518, 578
BfoI RGCGCY 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 2 cut(s) 208, 492
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 388, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 513
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 2 cut(s) 388, 636
BseGI GGATG 2 cut(s) 265, 629
BseLI CCNNNNNNNGG 2 cut(s) 394, 513
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 2 cut(s) 170, 314
BseNI ACTGG 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 3 cut(s) 15, 387, 489
BslI CCNNNNNNNGG 2 cut(s) 394, 513
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 3 cut(s) 15, 387, 489
Bsp1407I TGTACA 1 cut(s) 23
Bsp143I GATC 2 cut(s) 454, 469
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 1 cut(s) 446
BspANI GGCC 3 cut(s) 15, 387, 489
BspCNI CTCAG 2 cut(s) 169, 313
BspHI TCATGA 1 cut(s) 427
BspTI CTTAAG 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 23
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 388, 636
BssMI GATC 2 cut(s) 454, 469
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 418, 535
BstACI GRCGYC 1 cut(s) 227
BstAFI CTTAAG 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 23
BstC8I GCNNGC 3 cut(s) 192, 361, 365
BstDEI CTNAG 3 cut(s) 156, 300, 525
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 2 cut(s) 265, 629
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 457, 472
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 454, 469
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 387
BsuRI GGCC 3 cut(s) 15, 387, 489
BtgI CCRYGG 1 cut(s) 636
BtgZI GCGATG 1 cut(s) 464
BtsCI GGATG 2 cut(s) 265, 629
BtsIMutI CAGTG 2 cut(s) 182, 227
Cac8I GCNNGC 3 cut(s) 192, 361, 365
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 24, 531
CviAII CATG 2 cut(s) 428, 637
CviQI GTAC 2 cut(s) 24, 531
DdeI CTNAG 3 cut(s) 156, 300, 525
DpnI GATC 2 cut(s) 456, 471
DpnII GATC 2 cut(s) 454, 469
EaeI YGGCCR 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 636
Eco47III AGCGCT 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 636
EcoT22I ATGCAT 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 2 cut(s) 431, 640
FaiI YATR 9 cut(s) 60, 96, 135, 277, 353, 429, 434, 638, 647
FatI CATG 2 cut(s) 427, 636
FauI CCCGC 1 cut(s) 453
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 549
FokI GGATG 2 cut(s) 272, 616
FspBI CTAG 2 cut(s) 518, 578
GlaI GCGC 1 cut(s) 298
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 3 cut(s) 15, 387, 489
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 2 cut(s) 431, 640
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HphI GGTGA 2 cut(s) 316, 635
Hpy166II GTNNAC 4 cut(s) 225, 252, 372, 550
Hpy188I TCNGA 2 cut(s) 106, 210
Hpy188III TCNNGA 3 cut(s) 125, 428, 592
Hpy8I GTNNAC 4 cut(s) 225, 252, 372, 550
HpyAV CCTTC 3 cut(s) 106, 189, 614
HpyCH4III ACNGT 2 cut(s) 418, 535
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 8, 137, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 3 cut(s) 156, 300, 525
HpySE526I ACGT 1 cut(s) 227
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 2 cut(s) 431, 640
HspAI GCGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 2 cut(s) 454, 469
LmnI GCTCC 1 cut(s) 407
LweI GCATC 2 cut(s) 208, 492
MaeI CTAG 2 cut(s) 518, 578
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 6 cut(s) 62, 271, 304, 502, 520, 623
MalI GATC 2 cut(s) 456, 471
MboI GATC 2 cut(s) 454, 469
MboII GAAGA 3 cut(s) 138, 167, 479
MluCI AATT 3 cut(s) 39, 55, 450
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 1 cut(s) 377
Mph1103I ATGCAT 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 2 cut(s) 51, 670
MspCI CTTAAG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 196
NcoI CCATGG 1 cut(s) 636
NdeII GATC 2 cut(s) 454, 469
NlaIII CATG 2 cut(s) 431, 640
NmuCI GTSAC 4 cut(s) 62, 304, 520, 623
NsiI ATGCAT 1 cut(s) 139
PagI TCATGA 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 387
RsaI GTAC 2 cut(s) 25, 532
RsaNI GTAC 2 cut(s) 24, 531
SaqAI TTAA 2 cut(s) 51, 670
Sau3AI GATC 2 cut(s) 454, 469
ScrFI CCNGG 1 cut(s) 389
SetI ASST 9 cut(s) 196, 230, 271, 306, 382, 412, 424, 465, 625
SfaNI GCATC 2 cut(s) 208, 492
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 3 cut(s) 39, 55, 450
SsiI CCGC 1 cut(s) 446
SspMI CTAG 2 cut(s) 518, 578
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 418, 535
TaiI ACGT 1 cut(s) 230
TaqI TCGA 2 cut(s) 30, 653
TasI AATT 3 cut(s) 39, 55, 450
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 2 cut(s) 51, 670
Tru9I TTAA 2 cut(s) 51, 670
TscAI CASTG 2 cut(s) 189, 227
TseFI GTSAC 4 cut(s) 62, 304, 520, 623
Tsp45I GTSAC 4 cut(s) 62, 304, 520, 623
TspDTI ATGAA 3 cut(s) 416, 555, 633
TspRI CASTG 2 cut(s) 189, 227
Van91I CCANNNNNTGG 1 cut(s) 394
Vha464I CTTAAG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 2 cut(s) 518, 578
ZraI GACGTC 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.