Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006954

Physical Location & Seq

Genomic Coordinates Forward (+)

8503092 .. 8506964

Gene Structure 3873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47054

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTTCCATGTTCATGCTCTTGGTGACACAACAAACAGTTGCATGTCAACTGGACCACACTTCACAATTGTTGATAAGCAGGTTGTTTTCTGGACAAAAGTGTACCATCCAAACATTAATAGCAATGGTAGTATCTGCCTTGACATGCTTAAAGAGCAATGGAGCCCTGCCCCGAGTCCCTGACCATTTCCAAGGTGCAGGGAAAAGATCGAGTAGTTGTAAGATGTGTTGCAGAGCAGCTTGGCTTGTTTTGAGCCCCAGAGACGCACTTTCTAAAGTCTCTGCAGCTGTCATGAGAAATAAGCATCTCAAGAGTGGTATGTCGCAGTCCTATACAAACCAAAGGGACAAGGATTTGGATCGGGCGAGTGAGAGGCAGGATCTTGAAGGAAAGGAGCTAAAGCAAGAAACTACTTTGCATGAACTGGAGTTGGTTGCTGTCGATGCTCTTCATGAACTTGTTTCTTTAGTTCACAGTCATGTCAATGCTGCAGAGCAATATGATTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

171

Amino Acids

19.0

Weight (kDa)

7.67

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006954)

Species	Orthologous Gene IDs
malus_domestica	MD09G1111500.v1.1 MD13G1012800.v1.1 MD14G1086800.v1.1
pyrus_communis	pycom16g23680
rosa_chinensis	RchiOBHm_Chr1g0327391 RchiOBHm_Chr2g0095571 RchiOBHm_Chr2g0161621 RchiOBHm_Chr2g0171851 RchiOBHm_Chr3g0494951 RchiOBHm_Chr4g0407971
rosa_multiflora	Rmu_co8049090.1_g000001 Rmu_sc0003610.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001900 Rroxscaffold_1G00039140 Rroxscaffold_6G00388120
rosa_rugosa	Rorug02G0632300
rosa_samantha	Rh3AG069600 Rh3AG317900 Rh3BG072000 Rh3DG252300 Rh4AG109100 Rh4AG110900 Rh4CG284900 Rh6AG114600 Rh7AG464100
rosa_wichuraiana	Rw5G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AclWI	GGATC	2 cut(s)	369, 390
AfaI	GTAC	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	389
AluBI	AGCT	3 cut(s)	242, 290, 400
AluI	AGCT	3 cut(s)	242, 290, 400
Alw26I	GTCTC	2 cut(s)	258, 286
AlwI	GGATC	2 cut(s)	369, 390
Ama87I	CYCGRG	1 cut(s)	174
ApeKI	GCWGC	3 cut(s)	239, 287, 491
AseI	ATTAAT	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	169, 260
BbvI	GCAGC	3 cut(s)	251, 299, 478
BccI	CCATC	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	258, 286
BfmI	CTRYAG	2 cut(s)	285, 492
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	240, 288, 492
BlsI	GCNGC	3 cut(s)	241, 289, 493
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	2 cut(s)	316, 436
BpmI	CTGGAG	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	57, 432
Bse3DI	GCAATG	2 cut(s)	132, 166
Bse8I	GATNNNNATC	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	360
BseMI	GCAATG	2 cut(s)	132, 166
BseNI	ACTGG	2 cut(s)	57, 432
BseXI	GCAGC	3 cut(s)	251, 299, 478
BsgI	GTGCAG	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	164, 362
BsmAI	GTCTC	2 cut(s)	258, 286
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	164, 362
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	169, 260
Bsp143I	GATC	3 cut(s)	209, 361, 382
BspHI	TCATGA	2 cut(s)	294, 454
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	2 cut(s)	289, 496
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	369, 390
BspQI	GCTCTTC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	132, 166
BsrI	ACTGG	2 cut(s)	57, 432
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	209, 361, 382
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	40, 479
Bst6I	CTCTTC	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	3 cut(s)	212, 364, 385
BstMAI	GTCTC	2 cut(s)	258, 286
BstMBI	GATC	3 cut(s)	209, 361, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 446
BstNSI	RCATGY	2 cut(s)	48, 150
BstSFI	CTRYAG	2 cut(s)	285, 492
BstV1I	GCAGC	3 cut(s)	251, 299, 478
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	72
CciI	TCATGA	2 cut(s)	294, 454
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	8 cut(s)	10, 16, 45, 147, 295, 422, 455, 482
CviJI	RGCY	6 cut(s)	167, 242, 247, 258, 290, 400
CviKI_1	RGCY	6 cut(s)	167, 242, 247, 258, 290, 400
CviQI	GTAC	1 cut(s)	105
DpnI	GATC	3 cut(s)	211, 363, 384
DpnII	GATC	3 cut(s)	209, 361, 382
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	193
Eco24I	GRGCYC	2 cut(s)	169, 260
Eco47I	GGWCC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	193
EcoT38I	GRGCYC	2 cut(s)	169, 260
ErhI	CCWWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	8 cut(s)	13, 19, 48, 150, 298, 425, 458, 485
FaqI	GGGAC	2 cut(s)	164, 362
FatI	CATG	8 cut(s)	9, 15, 44, 146, 294, 421, 454, 481
Fnu4HI	GCNGC	3 cut(s)	240, 288, 492
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	2 cut(s)	169, 260
Fsp4HI	GCNGC	3 cut(s)	240, 288, 492
GluI	GCNGC	3 cut(s)	240, 288, 492
GsuI	CTGGAG	1 cut(s)	449
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	8 cut(s)	13, 19, 48, 150, 298, 425, 458, 485
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	50, 105, 475
Hpy188III	TCNNGA	5 cut(s)	93, 295, 313, 386, 455
Hpy8I	GTNNAC	3 cut(s)	50, 105, 475
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	2 cut(s)	40, 479
HpyCH4V	TGCA	6 cut(s)	44, 200, 234, 287, 421, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 446
Hsp92II	CATG	8 cut(s)	13, 19, 48, 150, 298, 425, 458, 485
Kzo9I	GATC	3 cut(s)	209, 361, 382
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	164, 397
LpnPI	CCDG	9 cut(s)	38, 67, 78, 182, 186, 195, 274, 365, 413
Lsp1109I	GCAGC	3 cut(s)	251, 299, 478
LweI	GCATC	2 cut(s)	316, 436
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	211, 363, 384
MboI	GATC	3 cut(s)	209, 361, 382
MboII	GAAGA	1 cut(s)	443
MfeI	CAATTG	1 cut(s)	68
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	169, 260
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	1 cut(s)	369
MseI	TTAA	2 cut(s)	119, 152
MslI	CAYNNNNRTG	3 cut(s)	14, 480, 486
MspA1I	CMGCKG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	156, 446
NdeII	GATC	3 cut(s)	209, 361, 382
NlaIII	CATG	8 cut(s)	13, 19, 48, 150, 298, 425, 458, 485
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	2 cut(s)	48, 150
PagI	TCATGA	2 cut(s)	294, 454
PciSI	GCTCTTC	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	241, 289, 493
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	55
PstI	CTGCAG	2 cut(s)	289, 496
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	3 cut(s)	14, 480, 486
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	119, 152
SatI	GCNGC	3 cut(s)	240, 288, 492
Sau3AI	GATC	3 cut(s)	209, 361, 382
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	169, 260
SetI	ASST	5 cut(s)	86, 199, 244, 292, 402
SfaNI	GCATC	2 cut(s)	316, 436
SfcI	CTRYAG	2 cut(s)	285, 492
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	3 cut(s)	14, 480, 486
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	40, 479
TaqI	TCGA	2 cut(s)	212, 444
TasI	AATT	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	119, 152
Tru9I	TTAA	2 cut(s)	119, 152
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	3 cut(s)	239, 287, 491
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	4 cut(s)	4, 438, 443, 471
VpaK11BI	GGWCC	1 cut(s)	55
VspI	ATTAAT	1 cut(s)	119
XceI	RCATGY	2 cut(s)	48, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.