Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006954

Physical Location & Seq

Genomic Coordinates Reverse (-)

2215960 .. 2220647

Gene Structure 4688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTGTGTTATTTGTAAATGGGCAGATGAGTTTAGCGACTTCTTTTCACTGTTTGGAGAGGTCAAGGAACATCAGATTATGTGGGACCATTCCACCGGTCTCTTGCGGGGATTTGGATTTGTTACCTTTGAGACAGAGCAAGCAGTTGATGATATCTTGGACAAGGGGAACAAGCTTGAGTTTGTGAAACTGCAAGGTGCAGGGAAAAGATCGAGTAGTTGTAAGATGTGTTGCAGAGCAGCTTGGCTTGATTTGAGCCCCAGAGACGCACTTTCTAAAGTCTCTGCAGCTGTCATGAGAAATAAGCATCTCAAGAGACCTGAGTCTATTTTGGACAGTGGCATGTCGCAGTCCTATACAAACCAAAGGGACAAGGATTTAGATCGGGCGAGTGAGAGGCAGGATCTTGAAGGAAAGGAGCTAAAGCAAGAAACTACTTTACATGAACTGGAGTCGACCGGCGATAGCGGCCGTGTAAACTTTAGGGCACGCGGTCATGTGATTATTGAGGATTTGCCTTCCAACATCTATACTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

179

Amino Acids

20.37

Weight (kDa)

5.98

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 60	6.5e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006954)

Species	Orthologous Gene IDs
malus_domestica	MD09G1111500.v1.1 MD13G1012800.v1.1 MD14G1086800.v1.1
pyrus_communis	pycom16g23680
rosa_chinensis	RchiOBHm_Chr1g0327391 RchiOBHm_Chr2g0095571 RchiOBHm_Chr2g0161621 RchiOBHm_Chr2g0171851 RchiOBHm_Chr3g0494951 RchiOBHm_Chr4g0407971
rosa_multiflora	Rmu_co8049090.1_g000001 Rmu_sc0003610.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001900 Rroxscaffold_1G00039140 Rroxscaffold_6G00388120
rosa_rugosa	Rorug02G0632300
rosa_samantha	Rh3AG069600 Rh3AG317900 Rh3BG072000 Rh3DG252300 Rh4AG109100 Rh4AG110900 Rh4CG284900 Rh6AG114600 Rh7AG464100
rosa_wichuraiana	Rw5G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	1 cut(s)	492
AciI	CCGC	3 cut(s)	106, 468, 492
AclWI	GGATC	1 cut(s)	411
AcoI	YGGCCR	1 cut(s)	469
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	410
AluBI	AGCT	4 cut(s)	175, 242, 290, 421
AluI	AGCT	4 cut(s)	175, 242, 290, 421
Alw26I	GTCTC	5 cut(s)	104, 125, 258, 286, 310
AlwI	GGATC	1 cut(s)	411
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	239, 287
AsiGI	ACCGGT	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	251, 299
BceAI	ACGGC	1 cut(s)	456
BcoDI	GTCTC	5 cut(s)	104, 125, 258, 286, 310
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	3 cut(s)	240, 288, 469
BlsI	GCNGC	3 cut(s)	241, 289, 470
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	86
BmsI	GCATC	1 cut(s)	316
BoxI	GACNNNNGTC	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	470
BpuEI	CTTGAG	2 cut(s)	197, 296
BsaBI	GATNNNNATC	1 cut(s)	381
BsaI	GGTCTC	2 cut(s)	104, 310
BsaWI	WCCGGW	1 cut(s)	95
Bse118I	RCCGGY	2 cut(s)	95, 458
Bse1I	ACTGG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	381
BseJI	GATNNNNATC	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	453
BseSI	GKGCMC	1 cut(s)	490
BseX3I	CGGCCG	1 cut(s)	469
BseXI	GCAGC	2 cut(s)	251, 299
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	492
Bsh1285I	CGRYCG	2 cut(s)	459, 472
BshFI	GGCC	1 cut(s)	471
BshTI	ACCGGT	1 cut(s)	95
BsiEI	CGRYCG	2 cut(s)	459, 472
BsiSI	CCGG	2 cut(s)	96, 459
BslFI	GGGAC	2 cut(s)	98, 383
BsmAI	GTCTC	5 cut(s)	104, 125, 258, 286, 310
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	98, 383
BsnI	GGCC	1 cut(s)	471
Bso31I	GGTCTC	2 cut(s)	104, 310
Bsp1286I	GDGCHC	2 cut(s)	260, 490
Bsp143I	GATC	3 cut(s)	209, 382, 403
BspACI	CCGC	3 cut(s)	106, 468, 492
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	492
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	86
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	1 cut(s)	411
BspTNI	GGTCTC	2 cut(s)	104, 310
BsrFI	RCCGGY	2 cut(s)	95, 458
BsrI	ACTGG	1 cut(s)	453
BssAI	RCCGGY	2 cut(s)	95, 458
BssMI	GATC	3 cut(s)	209, 382, 403
Bst4CI	ACNGT	2 cut(s)	51, 338
BstC8I	GCNNGC	2 cut(s)	141, 490
BstDEI	CTNAG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	492
BstKTI	GATC	3 cut(s)	212, 385, 406
BstMAI	GTCTC	5 cut(s)	104, 125, 258, 286, 310
BstMBI	GATC	3 cut(s)	209, 382, 403
BstMCI	CGRYCG	2 cut(s)	459, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNSI	RCATGY	1 cut(s)	346
BstPAI	GACNNNNGTC	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	251, 299
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	47, 343
Cac8I	GCNNGC	2 cut(s)	141, 490
CciI	TCATGA	1 cut(s)	294
Cfr10I	RCCGGY	2 cut(s)	95, 458
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	275
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	4 cut(s)	295, 343, 443, 497
CviJI	RGCY	7 cut(s)	175, 242, 247, 258, 290, 421, 471
CviKI_1	RGCY	7 cut(s)	175, 242, 247, 258, 290, 421, 471
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	211, 384, 405
DpnII	GATC	3 cut(s)	209, 382, 403
EaeI	YGGCCR	1 cut(s)	469
EagI	CGGCCG	1 cut(s)	469
EclXI	CGGCCG	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	2 cut(s)	104, 310
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	85
Eco52I	CGGCCG	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	4 cut(s)	298, 346, 446, 500
FaiI	YATR	7 cut(s)	80, 296, 344, 357, 444, 498, 531
FaqI	GGGAC	2 cut(s)	98, 383
FatI	CATG	4 cut(s)	294, 342, 442, 496
FauI	CCCGC	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	3 cut(s)	240, 288, 469
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	240, 288, 469
GluI	GCNGC	3 cut(s)	240, 288, 469
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	2 cut(s)	96, 459
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	298, 346, 446, 500
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	323, 452
HpaII	CCGG	2 cut(s)	96, 459
Hpy166II	GTNNAC	2 cut(s)	456, 478
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	3 cut(s)	295, 313, 407
Hpy8I	GTNNAC	2 cut(s)	456, 478
HpyAV	CCTTC	2 cut(s)	404, 528
HpyCH4III	ACNGT	2 cut(s)	51, 338
HpyCH4V	TGCA	4 cut(s)	193, 200, 234, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	298, 346, 446, 500
Kzo9I	GATC	3 cut(s)	209, 382, 403
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	7 cut(s)	109, 186, 274, 333, 386, 434, 472
Lsp1109I	GCAGC	2 cut(s)	251, 299
LweI	GCATC	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	211, 384, 405
MboI	GATC	3 cut(s)	209, 382, 403
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	260, 490
MlyI	GAGTC	2 cut(s)	332, 461
MnlI	CCTC	3 cut(s)	52, 390, 502
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	2 cut(s)	96, 459
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	468
NdeII	GATC	3 cut(s)	209, 382, 403
NlaIII	CATG	4 cut(s)	298, 346, 446, 500
NlaIV	GGNNCC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	346
PagI	TCATGA	1 cut(s)	294
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	241, 289, 470
PleI	GAGTC	2 cut(s)	331, 460
PpsI	GAGTC	2 cut(s)	331, 460
PshAI	GACNNNNGTC	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	290
SalI	GTCGAC	1 cut(s)	454
SatI	GCNGC	3 cut(s)	240, 288, 469
Sau3AI	GATC	3 cut(s)	209, 382, 403
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	2 cut(s)	332, 461
SduI	GDGCHC	2 cut(s)	260, 490
SetI	ASST	8 cut(s)	63, 128, 177, 199, 244, 292, 322, 423
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	176, 311
SmoI	CTYRAG	2 cut(s)	176, 311
SsiI	CCGC	3 cut(s)	106, 468, 492
TaaI	ACNGT	2 cut(s)	51, 338
TaqI	TCGA	2 cut(s)	212, 455
TauI	GCSGC	1 cut(s)	471
TscAI	CASTG	2 cut(s)	54, 343
TseI	GCWGC	2 cut(s)	239, 287
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	2 cut(s)	54, 343
VpaK11BI	GGWCC	1 cut(s)	85
XceI	RCATGY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.