Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006954

Physical Location & Seq

Genomic Coordinates Forward (+)

24842000 .. 24843331

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g23680.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTGCATTTGGCTTTGAATGTGCCTTGGACAAAGTAAATGGGGAACTTAAGAATTATAGGGACTTCTCTATCCATCGGGTATTTTCTCAACTTCTTGAAAATGAATGTCTTTCAAATTTTGATGCATTACTATCAATGTTTTGGAACGATTTGATTATCTGGGGCGTACAGTGTTCGTGTGCCTGTCTTTTGCTGTATTATGGTGTCTCAGATAAGAAAGGATTGCTTCCAGACAAATATGCATTGCTTTCTTCAAAATCTCAGGCATTGGCTGAACTTCTTCCTTCACTGAAGCTAGCTGGGCGTCGTGTTCTGATTTTCAGCCAGTGGACGTCAATGCTTGATATTTTGGAGTGGACTTTGGATGTGATAGGTGTTACATACAGACGACTTGATGGAAGCACTCAGGTGACAGAAAGACAGACGATAGTTGATACACTCAATAATGACACTTCTATATTTGCTTGCTTGCTGTCCACAAGAGTTGGAGGTCAGGGTTTGAACCTGGTTGGAGCTGATACCGTAGTTATTCATGATATGGATTACAACCCGCAAATTTATCCACAGGCAGAAGGTCGTTGTCATCGCATCGGCCAAGTGAAGCCTGTTACTATATACAGGCTAGTCACTAAGGCTACAGTTGATGAAAATGTCTACGAGATTGCGAAAAGGAAGTTAGTGCTAGATGCTGCAGTCCTGGAATCTGGCGTGGAGATGGATAATGAAGGTGACACTTCCACCATGGGAGAGATATTATCGAAACTTTTGCTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

260

Amino Acids

28.84

Weight (kDa)

4.96

Isoelectric Point (pI)

25.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006954)

Species	Orthologous Gene IDs
malus_domestica	MD09G1111500.v1.1 MD13G1012800.v1.1 MD14G1086800.v1.1
pyrus_communis	pycom16g23680
rosa_chinensis	RchiOBHm_Chr1g0327391 RchiOBHm_Chr2g0095571 RchiOBHm_Chr2g0161621 RchiOBHm_Chr2g0171851 RchiOBHm_Chr3g0494951 RchiOBHm_Chr4g0407971
rosa_multiflora	Rmu_co8049090.1_g000001 Rmu_sc0003610.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001900 Rroxscaffold_1G00039140 Rroxscaffold_6G00388120
rosa_rugosa	Rorug02G0632300
rosa_samantha	Rh3AG069600 Rh3AG317900 Rh3BG072000 Rh3DG252300 Rh4AG109100 Rh4AG110900 Rh4CG284900 Rh6AG114600 Rh7AG464100
rosa_wichuraiana	Rw5G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	657
AciI	CCGC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	2 cut(s)	118, 558
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	307, 335
AfaI	GTAC	1 cut(s)	171
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	5 cut(s)	20, 101, 117, 258, 505
AjnI	CCWGG	2 cut(s)	507, 699
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	3 cut(s)	298, 302, 518
AluI	AGCT	3 cut(s)	298, 302, 518
Alw26I	GTCTC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	2 cut(s)	118, 558
Asp700I	GAANNNNTTC	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	424, 743
AsuNHI	GCTAGC	1 cut(s)	298
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	3 cut(s)	84, 392, 712
BcgI	CGANNNNNNTGC	1 cut(s)	751
BciT130I	CCWGG	2 cut(s)	509, 701
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	299, 626, 686
BfmI	CTRYAG	2 cut(s)	639, 693
BfrI	CTTAAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	693
BlsI	GCNGC	1 cut(s)	694
Bme1390I	CCNGG	2 cut(s)	509, 701
BmrFI	CCNGG	2 cut(s)	509, 701
BmsI	GCATC	3 cut(s)	115, 600, 679
BmtI	GCTAGC	1 cut(s)	302
BsaHI	GRCGYC	2 cut(s)	307, 335
BsaJI	CCNNGG	2 cut(s)	27, 744
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	509, 701
BseDI	CCNNGG	2 cut(s)	27, 744
BseGI	GGATG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	3 cut(s)	225, 278, 422
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	679
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	597
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	3 cut(s)	224, 277, 421
BspHI	TCATGA	1 cut(s)	535
BspMAI	CTGCAG	1 cut(s)	697
BspOI	GCTAGC	1 cut(s)	302
BspTI	CTTAAG	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	27, 744
BssNI	GRCGYC	2 cut(s)	307, 335
BssT1I	CCWWGG	2 cut(s)	27, 744
Bst2UI	CCWGG	2 cut(s)	509, 701
Bst4CI	ACNGT	3 cut(s)	174, 526, 643
BstACI	GRCGYC	2 cut(s)	307, 335
BstAFI	CTTAAG	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	300, 469, 473
BstDEI	CTNAG	4 cut(s)	211, 264, 408, 633
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	2 cut(s)	509, 701
BstSCI	CCNGG	2 cut(s)	507, 699
BstSFI	CTRYAG	2 cut(s)	639, 693
BstV1I	GCAGC	1 cut(s)	679
BsuRI	GGCC	1 cut(s)	597
BtgI	CCRYGG	1 cut(s)	744
BtgZI	GCGATG	1 cut(s)	572
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	3 cut(s)	179, 290, 335
Cac8I	GCNNGC	3 cut(s)	300, 469, 473
CciI	TCATGA	1 cut(s)	535
CseI	GACGC	1 cut(s)	296
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	2 cut(s)	536, 745
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	4 cut(s)	211, 264, 408, 633
EaeI	YGGCCR	1 cut(s)	595
Eco130I	CCWWGG	2 cut(s)	27, 744
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	507, 699
EcoT14I	CCWWGG	2 cut(s)	27, 744
EcoT22I	ATGCAT	2 cut(s)	130, 247
ErhI	CCWWGG	2 cut(s)	27, 744
FaeI	CATG	2 cut(s)	539, 748
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	2 cut(s)	535, 744
FauI	CCCGC	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	693
FspBI	CTAG	3 cut(s)	299, 626, 686
GluI	GCNGC	1 cut(s)	693
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	597
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	2 cut(s)	307, 335
Hin1II	CATG	2 cut(s)	539, 748
HinfI	GANTC	1 cut(s)	704
HphI	GGTGA	2 cut(s)	424, 743
Hpy166II	GTNNAC	4 cut(s)	333, 360, 480, 658
Hpy188I	TCNGA	2 cut(s)	214, 318
Hpy188III	TCNNGA	3 cut(s)	98, 233, 536
Hpy8I	GTNNAC	4 cut(s)	333, 360, 480, 658
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	3 cut(s)	297, 569, 722
HpyCH4III	ACNGT	3 cut(s)	174, 526, 643
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	4 cut(s)	8, 128, 245, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	4 cut(s)	211, 264, 408, 633
HpySE526I	ACGT	1 cut(s)	335
Hsp92I	GRCGYC	2 cut(s)	307, 335
Hsp92II	CATG	2 cut(s)	539, 748
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	3 cut(s)	115, 600, 679
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	3 cut(s)	299, 626, 686
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	5 cut(s)	379, 412, 610, 628, 731
MboII	GAAGA	2 cut(s)	246, 275
MluCI	AATT	3 cut(s)	55, 118, 558
MmeI	TCCRAC	2 cut(s)	469, 493
MnlI	CCTC	1 cut(s)	485
Mph1103I	ATGCAT	2 cut(s)	130, 247
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	2 cut(s)	51, 778
MslI	CAYNNNNRTG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	509, 701
MvaI	CCWGG	2 cut(s)	509, 701
MwoI	GCNNNNNNNGC	1 cut(s)	304
NcoI	CCATGG	1 cut(s)	744
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	2 cut(s)	539, 748
NmuCI	GTSAC	3 cut(s)	412, 628, 731
NsiI	ATGCAT	2 cut(s)	130, 247
OliI	CACNNNNGTG	1 cut(s)	410
PagI	TCATGA	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	704
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	1 cut(s)	694
Psp6I	CCWGG	2 cut(s)	507, 699
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	507, 699
PstI	CTGCAG	1 cut(s)	697
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	51, 778
SatI	GCNGC	1 cut(s)	693
ScrFI	CCNGG	2 cut(s)	509, 701
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	3 cut(s)	115, 600, 679
SfcI	CTRYAG	2 cut(s)	639, 693
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	55, 118, 558
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	3 cut(s)	299, 626, 686
StyD4I	CCNGG	2 cut(s)	507, 699
StyI	CCWWGG	2 cut(s)	27, 744
TaaI	ACNGT	3 cut(s)	174, 526, 643
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	1 cut(s)	761
TasI	AATT	3 cut(s)	55, 118, 558
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	2 cut(s)	51, 778
Tru9I	TTAA	2 cut(s)	51, 778
TscAI	CASTG	3 cut(s)	179, 297, 335
TseFI	GTSAC	3 cut(s)	412, 628, 731
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	3 cut(s)	412, 628, 731
TspDTI	ATGAA	4 cut(s)	120, 524, 663, 741
TspRI	CASTG	3 cut(s)	179, 297, 335
Vha464I	CTTAAG	1 cut(s)	50
XapI	RAATTY	2 cut(s)	118, 558
XmiI	GTMKAC	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	3 cut(s)	299, 626, 686
ZraI	GACGTC	1 cut(s)	336
Zsp2I	ATGCAT	2 cut(s)	130, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.