Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006954

Physical Location & Seq

Genomic Coordinates Forward (+)

44252306 .. 44260868

Gene Structure 8563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGGTACATGCAGAAGGTTGAGGAGTTGTATTCATTGGACATTGATTCTCTTAACAATCTGAGGTATTTTTTGAGCCCTACAAGGACAGCAAAGTGGATCTTCTTGGCCCAAAGTTGCCAATTTGGGGACTTGGCACTTGGTGTGTGGAAGCTTAACACATTGGGGTTGCTTCCTACACATGCATCCGACTGGTTTTCATCCTTACCCCCTGCTCAGAATGACAAGGATTTGGATCGGGCGAGTGAGAGGCAAGATCTTGAAGGAAAGGAGCTAAAGCAAGAAACTACTTTGCATGAACTGGAGCCGGTTGCCGTCCATGCTCTTCATGAACTTGTTTCTTTAGTTCATAGTCATGTCAATGCTGCAGATCTAGCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

127

Amino Acids

14.43

Weight (kDa)

5.22

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC4	PF06417	31 - 69	9.8e-09	ER membrane protein complex subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006954)

Species	Orthologous Gene IDs
malus_domestica	MD09G1111500.v1.1 MD13G1012800.v1.1 MD14G1086800.v1.1
pyrus_communis	pycom16g23680
rosa_chinensis	RchiOBHm_Chr1g0327391 RchiOBHm_Chr2g0095571 RchiOBHm_Chr2g0161621 RchiOBHm_Chr2g0171851 RchiOBHm_Chr3g0494951 RchiOBHm_Chr4g0407971
rosa_multiflora	Rmu_co8049090.1_g000001 Rmu_sc0003610.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001900 Rroxscaffold_1G00039140 Rroxscaffold_6G00388120
rosa_rugosa	Rorug02G0632300
rosa_samantha	Rh3AG069600 Rh3AG317900 Rh3BG072000 Rh3DG252300 Rh4AG109100 Rh4AG110900 Rh4CG284900 Rh6AG114600 Rh7AG464100
rosa_wichuraiana	Rw5G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	107, 243
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	2 cut(s)	154, 274
AluI	AGCT	2 cut(s)	154, 274
AlwI	GGATC	2 cut(s)	107, 243
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	366
BglII	AGATCT	2 cut(s)	256, 370
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	197, 306
Bse8I	GATNNNNATC	1 cut(s)	234
BseGI	GGATG	2 cut(s)	185, 200
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	53, 230
BseNI	ACTGG	2 cut(s)	197, 306
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	99, 235, 256, 370
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	54, 229
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	107, 243
BspQI	GCTCTTC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	197, 306
BssAI	RCCGGY	1 cut(s)	307
BssMI	GATC	4 cut(s)	99, 235, 256, 370
Bst6I	CTCTTC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	62, 216
BstF5I	GGATG	2 cut(s)	185, 200
BstKTI	GATC	4 cut(s)	102, 238, 259, 373
BstMBI	GATC	4 cut(s)	99, 235, 256, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 374
BstNSI	RCATGY	2 cut(s)	13, 185
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	3 cut(s)	99, 256, 370
BstYI	RGATCY	3 cut(s)	99, 256, 370
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	185, 200
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	6 cut(s)	10, 182, 296, 320, 329, 356
CviJI	RGCY	5 cut(s)	78, 110, 154, 274, 307
CviKI_1	RGCY	5 cut(s)	78, 110, 154, 274, 307
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	62, 216
DpnI	GATC	4 cut(s)	101, 237, 258, 372
DpnII	GATC	4 cut(s)	99, 235, 256, 370
DraIII	CACNNNGTG	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	6 cut(s)	13, 185, 299, 323, 332, 359
FaiI	YATR	8 cut(s)	11, 183, 297, 321, 330, 351, 357, 382
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	6 cut(s)	9, 181, 295, 319, 328, 355
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	2 cut(s)	172, 187
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	6 cut(s)	13, 185, 299, 323, 332, 359
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	63, 190, 219
Hpy188III	TCNNGA	2 cut(s)	260, 329
HpyAV	CCTTC	2 cut(s)	10, 257
HpyCH4V	TGCA	4 cut(s)	13, 185, 295, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 374
HpyF3I	CTNAG	2 cut(s)	62, 216
Hsp92II	CATG	6 cut(s)	13, 185, 299, 323, 332, 359
Kzo9I	GATC	4 cut(s)	99, 235, 256, 370
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	271, 304
LpnPI	CCDG	4 cut(s)	178, 225, 287, 321
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	374
MalI	GATC	4 cut(s)	101, 237, 258, 372
MboI	GATC	4 cut(s)	99, 235, 256, 370
MboII	GAAGA	2 cut(s)	94, 317
MflI	RGATCY	3 cut(s)	99, 256, 370
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	16, 57, 243
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	2 cut(s)	54, 156
MslI	CAYNNNNRTG	2 cut(s)	354, 360
MspI	CCGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	320, 374
NdeII	GATC	4 cut(s)	99, 235, 256, 370
NlaIII	CATG	6 cut(s)	13, 185, 299, 323, 332, 359
NlaIV	GGNNCC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	2 cut(s)	13, 185
PagI	TCATGA	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	370
PsuI	RGATCY	3 cut(s)	99, 256, 370
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	354, 360
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	54, 156
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	4 cut(s)	99, 235, 256, 370
Sau96I	GGNCC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	5 cut(s)	8, 21, 68, 156, 276
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	354, 360
Sse9I	AATT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	374
TasI	AATT	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	54, 156
Tru9I	TTAA	2 cut(s)	54, 156
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	6 cut(s)	24, 189, 312, 317, 338, 345
XceI	RCATGY	2 cut(s)	13, 185
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.