Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006954

Physical Location & Seq

Genomic Coordinates Reverse (-)

30313575 .. 30317672

Gene Structure 4098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37917

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCAGCAGCTGACACGGCATTCGACGTCGGAGAATTTTGTGATGCATTGCAGTACCTCTCTTACGACTTCAGATCAGAATGACAAGGATTTGGATCGGGCGAGTGAGAGGCAGGATCTTGAAGGAAAGGAGCTAAAGCAAGAAACTACTTTGCATGAACTGGAGCCGGTTGCCGTCCATGCTCTTCATGAATTTGTTTCTTTAGTTCGCAGTCATGTCAATGCTGCAGAGCAATATGATTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

82

Amino Acids

9.44

Weight (kDa)

4.94

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006954)

Species	Orthologous Gene IDs
malus_domestica	MD09G1111500.v1.1 MD13G1012800.v1.1 MD14G1086800.v1.1
pyrus_communis	pycom16g23680
rosa_chinensis	RchiOBHm_Chr1g0327391 RchiOBHm_Chr2g0095571 RchiOBHm_Chr2g0161621 RchiOBHm_Chr2g0171851 RchiOBHm_Chr3g0494951 RchiOBHm_Chr4g0407971
rosa_multiflora	Rmu_co8049090.1_g000001 Rmu_sc0003610.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001900 Rroxscaffold_1G00039140 Rroxscaffold_6G00388120
rosa_rugosa	Rorug02G0632300
rosa_samantha	Rh3AG069600 Rh3AG317900 Rh3BG072000 Rh3DG252300 Rh4AG109100 Rh4AG110900 Rh4CG284900 Rh6AG114600 Rh7AG464100
rosa_wichuraiana	Rw5G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	102, 123
AcsI	RAATTY	2 cut(s)	34, 191
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	122
AluBI	AGCT	2 cut(s)	10, 133
AluI	AGCT	2 cut(s)	10, 133
AlwI	GGATC	2 cut(s)	102, 123
AlwNI	CAGNNNCTG	1 cut(s)	10
ApeKI	GCWGC	3 cut(s)	4, 7, 224
ApoI	RAATTY	2 cut(s)	34, 191
ArsI	GACNNNNNNTTYG	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	16, 19, 211
BceAI	ACGGC	2 cut(s)	32, 158
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	3 cut(s)	5, 8, 225
BlsI	GCNGC	3 cut(s)	6, 9, 226
BmiI	GGNNCC	1 cut(s)	165
BmsI	GCATC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	93
BseJI	GATNNNNATC	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	16, 19, 211
BsiSI	CCGG	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	73, 94, 115
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	229
BspPI	GGATC	2 cut(s)	102, 123
BspQI	GCTCTTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	166
BssMI	GATC	3 cut(s)	73, 94, 115
BssNI	GRCGYC	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	26
BstKTI	GATC	3 cut(s)	76, 97, 118
BstMBI	GATC	3 cut(s)	73, 94, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 179
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	16, 19, 211
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	10
CciI	TCATGA	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	4 cut(s)	155, 179, 188, 215
CviJI	RGCY	3 cut(s)	10, 133, 166
CviKI_1	RGCY	3 cut(s)	10, 133, 166
CviQI	GTAC	1 cut(s)	54
DpnI	GATC	3 cut(s)	75, 96, 117
DpnII	GATC	3 cut(s)	73, 94, 115
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	48
FaeI	CATG	4 cut(s)	158, 182, 191, 218
FaiI	YATR	5 cut(s)	156, 180, 189, 216, 237
FatI	CATG	4 cut(s)	154, 178, 187, 214
Fnu4HI	GCNGC	3 cut(s)	5, 8, 225
Fsp4HI	GCNGC	3 cut(s)	5, 8, 225
GluI	GCNGC	3 cut(s)	5, 8, 225
GsuI	CTGGAG	1 cut(s)	182
HapII	CCGG	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	158, 182, 191, 218
HpaII	CCGG	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	31, 73, 78
Hpy188III	TCNNGA	2 cut(s)	119, 188
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	4, 46, 51, 154, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 179
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	158, 182, 191, 218
Kzo9I	GATC	3 cut(s)	73, 94, 115
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	130, 163
LpnPI	CCDG	3 cut(s)	98, 146, 180
Lsp1109I	GCAGC	3 cut(s)	16, 19, 211
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	26
MalI	GATC	3 cut(s)	75, 96, 117
MboI	GATC	3 cut(s)	73, 94, 115
MboII	GAAGA	1 cut(s)	176
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	2 cut(s)	34, 191
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	2 cut(s)	67, 102
Mph1103I	ATGCAT	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	19
MwoI	GCNNNNNNNGC	2 cut(s)	16, 179
NdeII	GATC	3 cut(s)	73, 94, 115
NlaIII	CATG	4 cut(s)	158, 182, 191, 218
NlaIV	GGNNCC	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	48
PagI	TCATGA	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	6, 9, 226
PspN4I	GGNNCC	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	189
SatI	GCNGC	3 cut(s)	5, 8, 225
Sau3AI	GATC	3 cut(s)	73, 94, 115
SetI	ASST	4 cut(s)	12, 29, 59, 135
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	2 cut(s)	34, 191
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	34, 191
TseI	GCWGC	3 cut(s)	4, 7, 224
TspDTI	ATGAA	3 cut(s)	171, 176, 204
XapI	RAATTY	2 cut(s)	34, 191
ZraI	GACGTC	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.