Rh7AG464100

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006954
Physical Location & Seq
Forward (+)
63884660 .. 63916854
32195 bp
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UTR
Exon/CDS
Intron
Rh7AG464100.1

Sequence Viewer

Length: 255 bp
ATGAATGGCAGAGAGATCACAAAGATTGAGCTTAGGGTGCTCAAGTTTTTGAGCCCTACAAGGACAGCAAAGTGGATCTTCTTGGCCCAAAGTTGCCAATTTGGGGACTTGGCACTTGGTGTGTGGAAGCTTAACACATTGGGGTTGCTTCCTACACATGCATCCGACTGGGTTTCATCCTTACCCCCTGCTCAGAGATTTGCTGACTTTTCGATTCTTTGGAGTTCTGTTTATCGAAGGAATGAAGGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1077

Protein Analysis

84

Amino Acids

9.61

Weight (kDa)

10.16

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC4 PF06417 23 - 61 5.1e-09 ER membrane protein complex subunit 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 31, 130
AluI AGCT 2 cut(s) 31, 130
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 1 cut(s) 83
AoxI GGCC 2 cut(s) 84, 247
AspS9I GGNCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 85
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 161, 176
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 173
BshFI GGCC 2 cut(s) 86, 249
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 86, 249
Bsp1286I GDGCHC 2 cut(s) 42, 56
Bsp143I GATC 2 cut(s) 15, 75
BspANI GGCC 2 cut(s) 86, 249
BspCNI CTCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 249
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 249
BssMI GATC 2 cut(s) 15, 75
BstDEI CTNAG 2 cut(s) 32, 192
BstF5I GGATG 2 cut(s) 161, 176
BstKTI GATC 2 cut(s) 18, 78
BstMBI GATC 2 cut(s) 15, 75
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 2 cut(s) 86, 249
BtsCI GGATG 2 cut(s) 161, 176
Cfr10I RCCGGY 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 85
CviAII CATG 1 cut(s) 158
CviJI RGCY 5 cut(s) 31, 54, 86, 130, 249
CviKI_1 RGCY 5 cut(s) 31, 54, 86, 130, 249
DdeI CTNAG 2 cut(s) 32, 192
DpnI GATC 2 cut(s) 17, 77
DpnII GATC 2 cut(s) 15, 75
DraIII CACNNNGTG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 1 cut(s) 161
FaiI YATR 1 cut(s) 159
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 157
FokI GGATG 2 cut(s) 148, 163
FriOI GRGCYC 1 cut(s) 56
HaeIII GGCC 2 cut(s) 86, 249
HapII CCGG 1 cut(s) 250
Hin1II CATG 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 166, 195
HpyAV CCTTC 2 cut(s) 231, 239
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 32, 192
Hsp92II CATG 1 cut(s) 161
Kzo9I GATC 2 cut(s) 15, 75
LpnPI CCDG 2 cut(s) 154, 201
LweI GCATC 1 cut(s) 170
MalI GATC 2 cut(s) 17, 77
MboI GATC 2 cut(s) 15, 75
MboII GAAGA 1 cut(s) 70
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 42, 56
MluCI AATT 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 1 cut(s) 132
MspI CCGG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 2 cut(s) 15, 75
NlaIII CATG 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 1 cut(s) 161
PfeI GAWTC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 75
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 2 cut(s) 15, 75
Sau96I GGNCC 1 cut(s) 85
SduI GDGCHC 2 cut(s) 42, 56
SetI ASST 2 cut(s) 33, 132
SfaNI GCATC 1 cut(s) 170
SgeI CNNG 8 cut(s) 55, 72, 94, 121, 128, 170, 181, 200
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 98
TaqI TCGA 2 cut(s) 212, 235
TasI AATT 1 cut(s) 98
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TspDTI ATGAA 2 cut(s) 17, 165
XceI RCATGY 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.