Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006954

Physical Location & Seq

Genomic Coordinates Forward (+)

10729338 .. 10742640

Gene Structure 13303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1086800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTTGATACATTCAATAATGACACTTCTATATTTGCTTGCTTGCTGTCCACAAGAGTTGGAGGCCAGGGTTTGAACTTGGTTAGAGCTGATACCGTAGTTATTCATGATATGGATTTCAACCTGCAAATTGATCGACAGGCAGAAGATCATTGTCATCGCATCGGCCAAGTGAAGCCTGTTACCATAAACAGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

67

Amino Acids

7.38

Weight (kDa)

5.62

Isoelectric Point (pI)

25.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	2 - 56	6.3e-10	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006954)

Species	Orthologous Gene IDs
malus_domestica	MD09G1111500.v1.1 MD13G1012800.v1.1 MD14G1086800.v1.1
pyrus_communis	pycom16g23680
rosa_chinensis	RchiOBHm_Chr1g0327391 RchiOBHm_Chr2g0095571 RchiOBHm_Chr2g0161621 RchiOBHm_Chr2g0171851 RchiOBHm_Chr3g0494951 RchiOBHm_Chr4g0407971
rosa_multiflora	Rmu_co8049090.1_g000001 Rmu_sc0003610.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001900 Rroxscaffold_1G00039140 Rroxscaffold_6G00388120
rosa_rugosa	Rorug02G0632300
rosa_samantha	Rh3AG069600 Rh3AG317900 Rh3BG072000 Rh3DG252300 Rh4AG109100 Rh4AG110900 Rh4CG284900 Rh6AG114600 Rh7AG464100
rosa_wichuraiana	Rw5G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	16, 76, 121
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AoxI	GGCC	2 cut(s)	64, 166
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	66, 168
BsnI	GGCC	2 cut(s)	66, 168
Bsp143I	GATC	2 cut(s)	133, 148
BspANI	GGCC	2 cut(s)	66, 168
BspHI	TCATGA	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	133, 148
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	97, 194
BstC8I	GCNNGC	2 cut(s)	40, 44
BstKTI	GATC	2 cut(s)	136, 151
BstMBI	GATC	2 cut(s)	133, 148
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	66, 168
BtgZI	GCGATG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	40, 44
CciI	TCATGA	1 cut(s)	106
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	4 cut(s)	66, 89, 168, 178
CviKI_1	RGCY	4 cut(s)	66, 89, 168, 178
DpnI	GATC	2 cut(s)	135, 150
DpnII	GATC	2 cut(s)	133, 148
EaeI	YGGCCR	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	110
FaiI	YATR	4 cut(s)	32, 108, 113, 188
FatI	CATG	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	66, 168
Hin1II	CATG	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	97, 194
HpyCH4V	TGCA	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	133, 148
LpnPI	CCDG	5 cut(s)	53, 80, 125, 137, 192
LweI	GCATC	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	181, 194
MalI	GATC	2 cut(s)	135, 150
MboI	GATC	2 cut(s)	133, 148
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	133, 148
NlaIII	CATG	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	133, 148
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	2 cut(s)	91, 126
SfaNI	GCATC	1 cut(s)	171
Sse9I	AATT	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	97, 194
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.