Rh4CG284900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006954
Physical Location & Seq
Forward (+)
54198413 .. 54211866
13454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG284900.1

Sequence Viewer

Length: 312 bp
ATGGTAGTATCTGCCTTGACATGCTTAAAGAGCAATGGAGTCCTGCCCCGAGTCCCTGACCATTTCCAAGGTGCAGGGAAAAGATCGAGTAGTTGTAAGATGTGTTGCAGAGCAGCTTGGCTTGTTTTGAGCCCCAGAGACACACTTTCTAAAGTCTCTGCAGCTGTCATGAGAAATAAGCATCTCAAGAGTTTTACTCGTTTGGCCACTGAACCGGCTGAGTCTTCCCCAAGCAGTTCGAGGCTCGGACTCTCAAGGAAGCTCTCATGTCAGGTATTGTTTTGGGTTGATTCCGATTCCGATTCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.18

Weight (kDa)

9.79

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 204
AluBI AGCT 3 cut(s) 116, 164, 262
AluI AGCT 3 cut(s) 116, 164, 262
Alw26I GTCTC 2 cut(s) 132, 160
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 113, 161
AvaI CYCGRG 1 cut(s) 48
BalI TGGCCA 1 cut(s) 206
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 125, 173
BcoDI GTCTC 2 cut(s) 132, 160
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 114, 162
BlsI GCNGC 2 cut(s) 115, 163
BmeT110I CYCGRG 1 cut(s) 48
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpuEI CTTGAG 2 cut(s) 170, 238
BsaJI CCNNGG 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 125, 173
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 132, 160
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 83
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 219
BstKTI GATC 1 cut(s) 86
BstMAI GTCTC 2 cut(s) 132, 160
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNSI RCATGY 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 125, 173
BstV2I GAAGAC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 214
CviAII CATG 3 cut(s) 21, 169, 267
CviJI RGCY 8 cut(s) 116, 121, 132, 164, 206, 218, 244, 262
CviKI_1 RGCY 8 cut(s) 116, 121, 132, 164, 206, 218, 244, 262
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 24, 172, 270
FaiI YATR 3 cut(s) 22, 170, 268
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 20, 168, 266
Fnu4HI GCNGC 2 cut(s) 114, 162
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 114, 162
GluI GCNGC 2 cut(s) 114, 162
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 215
Hin1II CATG 3 cut(s) 24, 172, 270
HinfI GANTC 7 cut(s) 39, 51, 221, 249, 290, 296, 302
HpaII CCGG 1 cut(s) 215
Hpy188I TCNGA 4 cut(s) 248, 295, 301, 311
Hpy188III TCNNGA 2 cut(s) 169, 187
HpyCH4V TGCA 3 cut(s) 74, 108, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 3 cut(s) 24, 172, 270
Kzo9I GATC 1 cut(s) 83
LpnPI CCDG 6 cut(s) 56, 60, 69, 148, 228, 257
Lsp1109I GCAGC 2 cut(s) 125, 173
LweI GCATC 1 cut(s) 190
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 206
MluNI TGGCCA 1 cut(s) 206
MlyI GAGTC 4 cut(s) 48, 60, 230, 243
MnlI CCTC 1 cut(s) 234
Mox20I TGGCCA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 206
MseI TTAA 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 30
NdeII GATC 1 cut(s) 83
NlaIII CATG 3 cut(s) 24, 172, 270
NspI RCATGY 1 cut(s) 24
PagI TCATGA 1 cut(s) 168
PfeI GAWTC 3 cut(s) 290, 296, 302
PkrI GCNGC 2 cut(s) 115, 163
PleI GAGTC 4 cut(s) 47, 59, 229, 243
PpsI GAGTC 4 cut(s) 47, 59, 229, 243
PstI CTGCAG 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 2 cut(s) 114, 162
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 4 cut(s) 48, 60, 230, 243
SduI GDGCHC 1 cut(s) 134
SetI ASST 5 cut(s) 73, 118, 166, 264, 276
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 185, 253
SmoI CTYRAG 2 cut(s) 185, 253
StyI CCWWGG 1 cut(s) 67
TaqI TCGA 2 cut(s) 86, 239
TfiI GAWTC 3 cut(s) 290, 296, 302
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 214
TseI GCWGC 2 cut(s) 113, 161
TspRI CASTG 1 cut(s) 214
XceI RCATGY 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.