Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006954

Physical Location & Seq

Genomic Coordinates Forward (+)

77535083 .. 77540354

Gene Structure 5272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52997

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTGTCAAGGTGTTGGATTCAAATATGGTAAGAATTACCTATACCCAACACGCATAACATCTGGAGCAACAGCTTTGGTGTTTTCAGCCTTCTACATCATGTACCTGTTTCTCCCTCTGCAATGGATTGGCATGAATGCTATGCTTGTCTACGTTATGGCAGCTGAAGGTTGTGCTCTGCGTTTTAGGGGTCTTTACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCAGATCTACAAGCTATGGCAAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACAATTGAAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

126

Amino Acids

14.35

Weight (kDa)

9.23

Isoelectric Point (pI)

23.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	74 - 107	4.3e-07	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006954)

Species	Orthologous Gene IDs
malus_domestica	MD09G1111500.v1.1 MD13G1012800.v1.1 MD14G1086800.v1.1
pyrus_communis	pycom16g23680
rosa_chinensis	RchiOBHm_Chr1g0327391 RchiOBHm_Chr2g0095571 RchiOBHm_Chr2g0161621 RchiOBHm_Chr2g0171851 RchiOBHm_Chr3g0494951 RchiOBHm_Chr4g0407971
rosa_multiflora	Rmu_co8049090.1_g000001 Rmu_sc0003610.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001900 Rroxscaffold_1G00039140 Rroxscaffold_6G00388120
rosa_rugosa	Rorug02G0632300
rosa_samantha	Rh3AG069600 Rh3AG317900 Rh3BG072000 Rh3DG252300 Rh4AG109100 Rh4AG110900 Rh4CG284900 Rh6AG114600 Rh7AG464100
rosa_wichuraiana	Rw5G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	55, 371
AluBI	AGCT	4 cut(s)	107, 197, 296, 308
AluI	AGCT	4 cut(s)	107, 197, 296, 308
Alw21I	GWGCWC	2 cut(s)	211, 310
Alw26I	GTCTC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	357
Bbv12I	GWGCWC	2 cut(s)	211, 310
BbvI	GCAGC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	8
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	206
BsiHKAI	GWGCWC	2 cut(s)	211, 310
BsmAI	GTCTC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	211, 310
Bsp143I	GATC	2 cut(s)	252, 286
BsrDI	GCAATG	1 cut(s)	161
BssMI	GATC	2 cut(s)	252, 286
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	7, 36, 250
BstKTI	GATC	2 cut(s)	255, 289
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	252, 286
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	3 cut(s)	133, 166, 281
CviJI	RGCY	6 cut(s)	107, 122, 197, 296, 308, 349
CviKI_1	RGCY	6 cut(s)	107, 122, 197, 296, 308, 349
CviQI	GTAC	1 cut(s)	136
DpnI	GATC	2 cut(s)	254, 288
DpnII	GATC	2 cut(s)	252, 286
Ecl136II	GAGCTC	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	310
FaeI	CATG	3 cut(s)	136, 169, 284
FatI	CATG	3 cut(s)	132, 165, 280
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	195
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	117
Hin1II	CATG	3 cut(s)	136, 169, 284
HinfI	GANTC	3 cut(s)	16, 51, 274
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	20, 96
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	133, 194
HpyCH4III	ACNGT	3 cut(s)	7, 36, 250
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	29, 154, 236, 284
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	136, 169, 284
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	252, 286
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	3 cut(s)	15, 81, 152
Lsp1109I	GCAGC	1 cut(s)	206
MaeII	ACGT	1 cut(s)	186
MalI	GATC	2 cut(s)	254, 288
MboI	GATC	2 cut(s)	252, 286
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	211, 310
MluCI	AATT	2 cut(s)	67, 366
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	3 cut(s)	159, 288, 353
MspA1I	CMGCKG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	175
NdeII	GATC	2 cut(s)	252, 286
NlaIII	CATG	3 cut(s)	136, 169, 284
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	51, 274
PflFI	GACNNNGTC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	310
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	252, 286
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	211, 310
Sse9I	AATT	2 cut(s)	67, 366
SstI	GAGCTC	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	7, 36, 250
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	313
TasI	AATT	2 cut(s)	67, 366
TfiI	GAWTC	2 cut(s)	51, 274
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	255
Tth111I	GACNNNGTC	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.