Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006954

Physical Location & Seq

Genomic Coordinates Forward (+)

769069 .. 772961

Gene Structure 3893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGCCCTGCCCCGAGTCCCCTAACCATTTCCAAGGTGCAGGGAAAAGATCGAGTAGTTGTAAGATGTGTTGCAGAGCAGCTTGGCTTGTTTTGAGCCCCAGAGACGCACTTTCAAAAGTCTCTGCAGCTGTCATGAGAAATAAGCATCTCAAGAGTGGTATGTCGCAGTCCTATACAAACCAAAGGGACAAGGATTTGGATCGGGCGAGTGAGAGGCAGGATCTTGAAGGAAAGGAGCTAAAGCAAGAAACTACTTTGCATGAACTGGAGCCGGTTGCTGTCGATGCTCTTCATGAACTTGTTTCTTTAGTTCACAGTCATGTCAATGCTGCAGAGCAATATGATTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

6.06

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006954)

Species	Orthologous Gene IDs
malus_domestica	MD09G1111500.v1.1 MD13G1012800.v1.1 MD14G1086800.v1.1
pyrus_communis	pycom16g23680
rosa_chinensis	RchiOBHm_Chr1g0327391 RchiOBHm_Chr2g0095571 RchiOBHm_Chr2g0161621 RchiOBHm_Chr2g0171851 RchiOBHm_Chr3g0494951 RchiOBHm_Chr4g0407971
rosa_multiflora	Rmu_co8049090.1_g000001 Rmu_sc0003610.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001900 Rroxscaffold_1G00039140 Rroxscaffold_6G00388120
rosa_rugosa	Rorug02G0632300
rosa_samantha	Rh3AG069600 Rh3AG317900 Rh3BG072000 Rh3DG252300 Rh4AG109100 Rh4AG110900 Rh4CG284900 Rh6AG114600 Rh7AG464100
rosa_wichuraiana	Rw5G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	210, 231
AgsI	TTSAA	2 cut(s)	117, 230
AluBI	AGCT	3 cut(s)	83, 131, 241
AluI	AGCT	3 cut(s)	83, 131, 241
Alw26I	GTCTC	2 cut(s)	99, 127
AlwI	GGATC	2 cut(s)	210, 231
Ama87I	CYCGRG	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	80, 128, 332
AvaI	CYCGRG	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	9, 101
BbvI	GCAGC	3 cut(s)	92, 140, 319
BcoDI	GTCTC	2 cut(s)	99, 127
BfmI	CTRYAG	2 cut(s)	126, 333
BisI	GCNGC	3 cut(s)	81, 129, 333
BlsI	GCNGC	3 cut(s)	82, 130, 334
BmeT110I	CYCGRG	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	6, 273
BmsI	GCATC	2 cut(s)	157, 277
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	34
BseJI	GATNNNNATC	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	92, 140, 319
BsgI	GTGCAG	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	4, 203
BsmAI	GTCTC	2 cut(s)	99, 127
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	4, 203
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	9, 101
Bsp143I	GATC	3 cut(s)	50, 202, 223
BspHI	TCATGA	2 cut(s)	135, 295
BspLI	GGNNCC	2 cut(s)	6, 273
BspMAI	CTGCAG	2 cut(s)	130, 337
BspPI	GGATC	2 cut(s)	210, 231
BspQI	GCTCTTC	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	3 cut(s)	50, 202, 223
BssT1I	CCWWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	297
BstKTI	GATC	3 cut(s)	53, 205, 226
BstMAI	GTCTC	2 cut(s)	99, 127
BstMBI	GATC	3 cut(s)	50, 202, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSFI	CTRYAG	2 cut(s)	126, 333
BstV1I	GCAGC	3 cut(s)	92, 140, 319
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
CciI	TCATGA	2 cut(s)	135, 295
Cfr10I	RCCGGY	1 cut(s)	274
CseI	GACGC	1 cut(s)	116
CviAII	CATG	4 cut(s)	136, 263, 296, 323
CviJI	RGCY	7 cut(s)	7, 83, 88, 99, 131, 241, 274
CviKI_1	RGCY	7 cut(s)	7, 83, 88, 99, 131, 241, 274
DpnI	GATC	3 cut(s)	52, 204, 225
DpnII	GATC	3 cut(s)	50, 202, 223
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	2 cut(s)	9, 101
Eco88I	CYCGRG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	34
EcoT38I	GRGCYC	2 cut(s)	9, 101
ErhI	CCWWGG	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	4 cut(s)	139, 266, 299, 326
FaiI	YATR	7 cut(s)	137, 164, 177, 264, 297, 324, 345
FaqI	GGGAC	2 cut(s)	4, 203
FatI	CATG	4 cut(s)	135, 262, 295, 322
Fnu4HI	GCNGC	3 cut(s)	81, 129, 333
FriOI	GRGCYC	2 cut(s)	9, 101
Fsp4HI	GCNGC	3 cut(s)	81, 129, 333
GluI	GCNGC	3 cut(s)	81, 129, 333
GsuI	CTGGAG	1 cut(s)	290
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	139, 266, 299, 326
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	4 cut(s)	136, 154, 227, 296
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	5 cut(s)	41, 75, 128, 262, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
Hsp92II	CATG	4 cut(s)	139, 266, 299, 326
Kzo9I	GATC	3 cut(s)	50, 202, 223
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	3 cut(s)	4, 238, 271
LpnPI	CCDG	6 cut(s)	22, 27, 115, 206, 254, 288
Lsp1109I	GCAGC	3 cut(s)	92, 140, 319
LweI	GCATC	2 cut(s)	157, 277
MalI	GATC	3 cut(s)	52, 204, 225
MboI	GATC	3 cut(s)	50, 202, 223
MboII	GAAGA	1 cut(s)	284
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	9, 101
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	1 cut(s)	210
MslI	CAYNNNNRTG	2 cut(s)	321, 327
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	3 cut(s)	50, 202, 223
NlaIII	CATG	4 cut(s)	139, 266, 299, 326
NlaIV	GGNNCC	2 cut(s)	6, 273
PagI	TCATGA	2 cut(s)	135, 295
PciSI	GCTCTTC	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	82, 130, 334
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	6, 273
PstI	CTGCAG	2 cut(s)	130, 337
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	131
RseI	CAYNNNNRTG	2 cut(s)	321, 327
SapI	GCTCTTC	1 cut(s)	297
SatI	GCNGC	3 cut(s)	81, 129, 333
Sau3AI	GATC	3 cut(s)	50, 202, 223
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	9, 101
SetI	ASST	4 cut(s)	40, 85, 133, 243
SfaNI	GCATC	2 cut(s)	157, 277
SfcI	CTRYAG	2 cut(s)	126, 333
SmiMI	CAYNNNNRTG	2 cut(s)	321, 327
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	53, 285
TseI	GCWGC	3 cut(s)	80, 128, 332
TspDTI	ATGAA	3 cut(s)	279, 284, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.