Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004923

Physical Location & Seq

Genomic Coordinates Reverse (-)

3260080 .. 3270505

Gene Structure 10426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1047000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGTTGGTTCAGAGGAGAGTGATGACGTGGAGATCGGTGGCCAAGTCTTTGCAAACACTTGTCGCCCACGCCTCCCTTTTCACGTTCACGATTCTCCTCGTTCTCAAGCTCCGCCGTTTTGTCCGCTACTCTTGGTGGATCATATTTTCCCCTCTGTGGCTTTTCCATGTAGTTGTTGCAAGAGGCAGATTTTCATTACCTGCTCCAAAGCTGCCTAATGATCGCAATTGGGCACCTTTTCATGCTGTCATGGCGACACCGTTGCTTGTCTCATTTGAACTAATGCTTTGTATATACCTTCAGAGCAGATATGTTGTAAGCTTGAAGATTGTCTTTGCACCCTTGTTGGCATTTGAACTAGCAATTCTATTTGATAATGTCAGGATGTGTAAGGCTCTAATGCCTGGAGACGATGAACACGCGAATGATGATGTGATATGGGAAACGCTTCCTCACTTCTGGATTTCTATATCCATGGTCTTCTTTCTTGCTGCCACAGTATTCACTCTTTTAAAGATAAATGGTGATATTTCTGCTCTAGGCTGGTGGGACTTATTCATAAACTTTGGAATTGCACAGGGTTTTGCCTTTCTTGTCTGCACGAAGTGGTATAATCCAGCTATTCACAGACACGCACACATTCAAGAACCTTGTTCATCTTCCATGAATGTAAGATACCTTGACTGGAATAGCGGCTTAGTTGTTTCTTCAGATGACGATCAAGACGAGACTGTAGTATGCAGCCTTCAGGATATCGGTGGGCATATTATGAAAATTCCTCTAATCATTTTCCAGATCCTACTCTTTATGCGCTTAGAGGGGAGGCCATCGGCTGCTAGGCATATCCCAGTTCCAGTTCTTTTTGCTCCTCTTGTTTTAGTGCAAGGAACCGGTCTTTTGTTTTCCACATATAGATTAACAGAGAAAATTGTTCTTTTAGTACGTGATGGAGTTTTTTCTGTAAGATACTTGGACATAGCATCAAAAGTTCGCGAGTATTTTGGGTTCTATCGCCATGGTTCAAGGTTATTGGGCTGGTGGTCGATTGACGAAGGAAGTCGAGAGGAACAGGCTAGACTGTATTATGCAGGAGCTTCAGGATATAACACTTTTTCACCTGATATAGTGAAGAAGTTGCCTAGATCAGACCTCGTTGAGGAGATTTGGAAACTGCAAGCTGCACTCAGTGAGCAAACAGAAATCACGAAATTTAGCCAGCAGGAGTACGAAAGACTTCAGAATGAAAAGATCCTATGTAGAGTATGCTTTGAAGAACAGATTAATATAGTCCTGCTTCCATGCCGGCATCATGTTCTTTGCAGCACTTGCTGTGAGAAGTGTAAAAAGTGCCCCATATGTCGTGTCTGCATTGAACAGCGAGTGCCGATATATCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

467

Amino Acids

53.82

Weight (kDa)

8.55

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_185A	PF10269	35 - 294	3.3e-90	Transmembrane Fragile-X-F protein
zf-C3HC4_3	PF13920	417 - 459	8.7e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68820 AT1G68820 AT1G68820 AT1G68820
fragaria_vesca	FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120
malus_domestica	MD13G1047000.v1.1 MD16G1048600.v1.1
prunus_persica	Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1
pyrus_communis	pycom13g04110 pycom16g04250
rosa_chinensis	RchiOBHm_Chr4g0435891
rosa_laevigata	RLG00000006552
rosa_multiflora	Rmu_sc0003165.1_g000009
rosa_roxburghii	Rroxscaffold_5G00377060
rosa_rugosa	Rorug04G0290300 Rorug04G0290400 Rorug04G0290500 Rorug04G0290600
rosa_samantha	Rh4AG344800 Rh4BG353600 Rh4CG368000 Rh4DG347400
rosa_wichuraiana	Rw4G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	232
AccII	CGCG	2 cut(s)	422, 993
AciI	CCGC	3 cut(s)	112, 124, 693
AclWI	GGATC	3 cut(s)	146, 790, 1243
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	774, 1208
AcuI	CTGAAG	5 cut(s)	284, 693, 731, 1080, 1220
AdeI	CACNNNGTG	2 cut(s)	606, 1187
AfaI	GTAC	2 cut(s)	942, 1226
AfiI	CCNNNNNNNGG	2 cut(s)	156, 1156
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	7 cut(s)	278, 325, 356, 644, 1023, 1271, 1373
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	6 cut(s)	109, 211, 321, 620, 1094, 1178
AluI	AGCT	6 cut(s)	109, 211, 321, 620, 1094, 1178
Alw26I	GTCTC	3 cut(s)	274, 402, 722
AlwI	GGATC	3 cut(s)	146, 790, 1243
AoxI	GGCC	2 cut(s)	39, 824
ApeKI	GCWGC	6 cut(s)	211, 491, 741, 833, 1178, 1320
ApoI	RAATTY	2 cut(s)	774, 1208
AseI	ATTAAT	1 cut(s)	1281
AsiGI	ACCGGT	1 cut(s)	890
Asp700I	GAANNNNTTC	2 cut(s)	447, 1233
AspLEI	GCGC	1 cut(s)	813
AsuHPI	GGTGA	2 cut(s)	536, 1107
BaeGI	GKGCMC	2 cut(s)	235, 1352
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	232
BarI	GAAGNNNNNNTAC	2 cut(s)	729, 761
BbsI	GAAGAC	1 cut(s)	472
BbvI	GCAGC	6 cut(s)	198, 478, 753, 820, 1165, 1332
BccI	CCATC	2 cut(s)	835, 941
BceAI	ACGGC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	3 cut(s)	274, 402, 722
BfaI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140
BfmI	CTRYAG	1 cut(s)	732
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	7 cut(s)	212, 492, 694, 742, 834, 1179, 1321
BlsI	GCNGC	7 cut(s)	213, 493, 695, 743, 835, 1180, 1322
Bme1390I	CCNGG	1 cut(s)	405
BmgBI	CACGTC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	234, 889
BmrFI	CCNGG	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	989, 1315
BmuI	ACTGGG	1 cut(s)	842
BpiI	GAAGAC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	944
BsaBI	GATNNNNATC	1 cut(s)	717
BsaJI	CCNNGG	2 cut(s)	474, 1015
BsaWI	WCCGGW	1 cut(s)	890
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 1156
Bse118I	RCCGGY	2 cut(s)	890, 1302
Bse1I	ACTGG	3 cut(s)	689, 848, 854
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	474, 1015
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	2 cut(s)	156, 1156
BseMII	CTCAG	1 cut(s)	1198
BseNI	ACTGG	3 cut(s)	689, 848, 854
BseRI	GAGGAG	4 cut(s)	28, 86, 858, 1172
BseSI	GKGCMC	2 cut(s)	235, 1352
BseXI	GCAGC	6 cut(s)	198, 478, 753, 820, 1165, 1332
BsgI	GTGCAG	2 cut(s)	583, 1164
Bsh1236I	CGCG	2 cut(s)	422, 993
BshFI	GGCC	2 cut(s)	41, 826
BshNI	GGYRCC	1 cut(s)	232
BshTI	ACCGGT	1 cut(s)	890
BsiSI	CCGG	2 cut(s)	891, 1303
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	156, 1156
BsmAI	GTCTC	3 cut(s)	274, 402, 722
BsmBI	CGTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	41, 826
Bsp1286I	GDGCHC	2 cut(s)	235, 1352
Bsp143I	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
Bsp19I	CCATGG	2 cut(s)	474, 1015
Bsp68I	TCGCGA	1 cut(s)	993
BspACI	CCGC	3 cut(s)	112, 124, 693
BspANI	GGCC	2 cut(s)	41, 826
BspCNI	CTCAG	1 cut(s)	1197
BspFNI	CGCG	2 cut(s)	422, 993
BspLI	GGNNCC	2 cut(s)	234, 889
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	3 cut(s)	146, 790, 1243
BspT107I	GGYRCC	1 cut(s)	232
BsrFI	RCCGGY	2 cut(s)	890, 1302
BsrI	ACTGG	3 cut(s)	689, 848, 854
BssAI	RCCGGY	2 cut(s)	890, 1302
BssECI	CCNNGG	2 cut(s)	474, 1015
BssMI	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
BssT1I	CCWWGG	2 cut(s)	474, 1015
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	261, 499, 733, 1080
BstAPI	GCANNNNNTGC	1 cut(s)	1326
BstBAI	YACGTR	1 cut(s)	944
BstC8I	GCNNGC	3 cut(s)	1176, 1217, 1304
BstDEI	CTNAG	3 cut(s)	697, 814, 1184
BstDSI	CCRYGG	2 cut(s)	474, 1015
BstENI	CCTNNNNNAGG	1 cut(s)	1154
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	2 cut(s)	422, 993
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	7 cut(s)	35, 141, 223, 721, 798, 1145, 1251
BstMAI	GTCTC	3 cut(s)	274, 402, 722
BstMBI	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 1326
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	2 cut(s)	235, 1352
BstUI	CGCG	2 cut(s)	422, 993
BstV1I	GCAGC	6 cut(s)	198, 478, 753, 820, 1165, 1332
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	2 cut(s)	795, 1248
BstYI	RGATCY	2 cut(s)	795, 1248
BsuRI	GGCC	2 cut(s)	41, 826
BtgI	CCRYGG	2 cut(s)	474, 1015
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	1192
BtuMI	TCGCGA	1 cut(s)	993
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	1176, 1217, 1304
CfoI	GCGC	1 cut(s)	813
Cfr10I	RCCGGY	2 cut(s)	890, 1302
Csp6I	GTAC	2 cut(s)	941, 1225
CspAI	ACCGGT	1 cut(s)	890
CviAII	CATG	9 cut(s)	167, 242, 250, 475, 664, 1016, 1299, 1310, 1394
CviQI	GTAC	2 cut(s)	941, 1225
DdeI	CTNAG	3 cut(s)	697, 814, 1184
DpnI	GATC	7 cut(s)	34, 140, 222, 720, 797, 1144, 1250
DpnII	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
DraI	TTTAAA	1 cut(s)	513
DraIII	CACNNNGTG	2 cut(s)	606, 1187
EaeI	YGGCCR	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	474, 1015
Eco32I	GATATC	1 cut(s)	754
Eco57I	CTGAAG	5 cut(s)	284, 693, 731, 1080, 1220
EcoNI	CCTNNNNNAGG	1 cut(s)	1154
EcoRII	CCWGG	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	2 cut(s)	474, 1015
ErhI	CCWWGG	2 cut(s)	474, 1015
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	9 cut(s)	170, 245, 253, 478, 667, 1019, 1302, 1313, 1397
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	9 cut(s)	166, 241, 249, 474, 663, 1015, 1298, 1309, 1393
FauNDI	CATATG	1 cut(s)	1355
Fnu4HI	GCNGC	7 cut(s)	212, 492, 694, 742, 834, 1179, 1321
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	7 cut(s)	212, 492, 694, 742, 834, 1179, 1321
FspBI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	7 cut(s)	212, 492, 694, 742, 834, 1179, 1321
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	41, 826
HapII	CCGG	2 cut(s)	891, 1303
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	9 cut(s)	170, 245, 253, 478, 667, 1019, 1302, 1313, 1397
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	891, 1303
HphI	GGTGA	2 cut(s)	536, 1107
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	5 cut(s)	12, 303, 712, 1147, 1239
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	3 cut(s)	308, 755, 1046
HpyCH4III	ACNGT	4 cut(s)	261, 499, 733, 1080
HpyCH4IV	ACGT	3 cut(s)	26, 83, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 1326
HpyF3I	CTNAG	3 cut(s)	697, 814, 1184
HpySE526I	ACGT	3 cut(s)	26, 83, 943
Hsp92II	CATG	9 cut(s)	170, 245, 253, 478, 667, 1019, 1302, 1313, 1397
HspAI	GCGC	1 cut(s)	811
KroI	GCCGGC	1 cut(s)	1302
KroNI	GCCGGC	1 cut(s)	1304
Kzo9I	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
LmnI	GCTCC	4 cut(s)	114, 208, 871, 1091
Lsp1109I	GCAGC	6 cut(s)	198, 478, 753, 820, 1165, 1332
LweI	GCATC	2 cut(s)	989, 1315
MaeI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140
MaeII	ACGT	3 cut(s)	26, 83, 943
MalI	GATC	7 cut(s)	34, 140, 222, 720, 797, 1144, 1250
MboI	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
MboII	GAAGA	6 cut(s)	337, 472, 651, 699, 1141, 1283
MfeI	CAATTG	1 cut(s)	226
MflI	RGATCY	2 cut(s)	795, 1248
MhlI	GDGCHC	2 cut(s)	235, 1352
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	6 cut(s)	226, 363, 570, 774, 927, 1208
MluNI	TGGCCA	1 cut(s)	41
Mox20I	TGGCCA	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	1302
MroXI	GAANNNNTTC	2 cut(s)	447, 1233
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	3 cut(s)	512, 917, 1281
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	41
MspI	CCGG	2 cut(s)	891, 1303
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	422, 993
MwoI	GCNNNNNNNGC	2 cut(s)	251, 1326
NaeI	GCCGGC	1 cut(s)	1304
NcoI	CCATGG	2 cut(s)	474, 1015
NdeI	CATATG	1 cut(s)	1355
NdeII	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
NgoMIV	GCCGGC	1 cut(s)	1302
NlaIII	CATG	9 cut(s)	170, 245, 253, 478, 667, 1019, 1302, 1313, 1397
NlaIV	GGNNCC	2 cut(s)	234, 889
NruI	TCGCGA	1 cut(s)	993
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PdiI	GCCGGC	1 cut(s)	1304
PdmI	GAANNNNTTC	2 cut(s)	447, 1233
PfeI	GAWTC	1 cut(s)	91
PinAI	ACCGGT	1 cut(s)	890
PkrI	GCNGC	7 cut(s)	213, 493, 695, 743, 835, 1180, 1322
Ppu21I	YACGTR	1 cut(s)	944
PshBI	ATTAAT	1 cut(s)	1281
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	234, 889
PsrI	GAACNNNNNNTAC	2 cut(s)	989, 1021
PsuI	RGATCY	2 cut(s)	795, 1248
RruI	TCGCGA	1 cut(s)	993
RsaI	GTAC	2 cut(s)	942, 1226
RsaNI	GTAC	2 cut(s)	941, 1225
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	512, 917, 1281
SatI	GCNGC	7 cut(s)	212, 492, 694, 742, 834, 1179, 1321
Sau3AI	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	2 cut(s)	235, 1352
SfaNI	GCATC	2 cut(s)	989, 1315
SfcI	CTRYAG	1 cut(s)	732
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	6 cut(s)	226, 363, 570, 774, 927, 1208
SsiI	CCGC	3 cut(s)	112, 124, 693
SspMI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	2 cut(s)	474, 1015
TaaI	ACNGT	4 cut(s)	261, 499, 733, 1080
TaiI	ACGT	3 cut(s)	29, 86, 946
TaqI	TCGA	2 cut(s)	1043, 1060
TasI	AATT	6 cut(s)	226, 363, 570, 774, 927, 1208
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	512, 917, 1281
Tru9I	TTAA	3 cut(s)	512, 917, 1281
TscAI	CASTG	1 cut(s)	1192
TseI	GCWGC	6 cut(s)	211, 491, 741, 833, 1178, 1320
TspDTI	ATGAA	8 cut(s)	183, 230, 429, 547, 645, 680, 785, 1257
TspRI	CASTG	1 cut(s)	1192
VspI	ATTAAT	1 cut(s)	1281
XagI	CCTNNNNNAGG	1 cut(s)	1154
XapI	RAATTY	2 cut(s)	774, 1208
XmnI	GAANNNNTTC	2 cut(s)	447, 1233
XspI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.