Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004923

Physical Location & Seq

Genomic Coordinates Forward (+)

29862643 .. 29868553

Gene Structure 5911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G305000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGTTGGTTCCGCGGAGAGTGATGACGTGGAGGTCGGTGGCCAAGTCTCTGCAACCTCTTCTTGCCCATGCCTCGCTTTTCACATTCACGATTTTCCTCGTCCTTAAACTCCACCATGCCGTGCGGTACCATTGGTGGATCATATTTTCCCCTCTGTGGCTTTTCCATGCAGTTGTAGCACGAGGCAGATTTTCGTTACCTGCTCCAAAGCTGCCTAATGATCGCAACTGGGCACCTTTTCATGCTGTCATGGCGACACCGTTGCTTGTCGCATTTGAACTAATGCTTTGTATCTATCTTGAGAGCAAATATGTTGTAAGCTTGAAGATTGTCTTTGCACCTTTGGTGGCGTTGGAACTCGCAATTCTATTTGATAATATCAGGATGTGTAAGGCTCTAATGCCTAGCGATGATGAGCATGTGAGTGATGATGTGATATGGGAAACGCTTCCTCACTTCTGGATCTCTATATCCATGGTCTTCCTTACTGCTGCCACAATATTTACTCTTCTAAAGATAAATGGTGATATTTCTGTTTTAGGCTGGTGGGACTTGTTTATTAACTTTGGAATTGCAGAGTGTTTTGCCTTTCTTGTTTGCACGAAGTGGTATAATCCAGCTATTCACAGACATGCTCACATTCAAGAACCATGTTCACCTTCAATGACTATTAGATACCTTGACTGGAATAGTGGCTTAGTAGTTTCTTCAGATGAAGATCAAGACGAGAGTGCAGTATGCAGCCTGCAGGATATTGGTGGACATATTATGAAAATTCCTCTAATCTGTTTCCAGATCCTACTCTTTATGCACTTAGAGGGAAGACCGTCTGTTGCTAGGCATATCTCAATTCCTGTTCTTTTCACTCCTCTTCTTTTACTGCAAGGAGCCGGTGTTTTATTTGCTGCATATAGATTAACAGAGAAAATTCTTCTTTTAGTACACAATGGAGTTTTTTCTGGAAGATACTTGGACATAACATCAAAAGTTCGTGAGTATTTTGGGTTCTTTCGCCATGGTTCAAGGTTTTTGGGTTGGTGGTCGATTGACGAAGGAAGTCGAGAGGAACAGGCTAGACTGTATTGTGCAGGGGCTTCAGGGTATGACACTTTTTCACCTGATATAGTGAAGAAGTTGCCTAGATCGGACCTTGTTCAGGAGATTTGGAAACTGCAAGCTGCACTCAGTGAGCAAACAGAAATCACGAAATTTAGCCAGCAGGAGTATGAAAGACTTCAGAATGAAAAGATTTTATGTCGAGTATGCTTCGAGGAGCAGATTAATATAGTCCTCCTTCCATGCAGGCATCATGTTCTTTGCAGCACTTGCTGTGCGAAGTGTAAAAAGTGCCCCATATGCCGCGTCTCCATTGAACATCGACTGCCCATATATCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

467

Amino Acids

53.58

Weight (kDa)

7.87

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68820 AT1G68820 AT1G68820 AT1G68820
fragaria_vesca	FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120
malus_domestica	MD13G1047000.v1.1 MD16G1048600.v1.1
prunus_persica	Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1
pyrus_communis	pycom13g04110 pycom16g04250
rosa_chinensis	RchiOBHm_Chr4g0435891
rosa_laevigata	RLG00000006552
rosa_multiflora	Rmu_sc0003165.1_g000009
rosa_roxburghii	Rroxscaffold_5G00377060
rosa_rugosa	Rorug04G0290300 Rorug04G0290400 Rorug04G0290500 Rorug04G0290600
rosa_samantha	Rh4AG344800 Rh4BG353600 Rh4CG368000 Rh4DG347400
rosa_wichuraiana	Rw4G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	208
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	2 cut(s)	126, 232
AccII	CGCG	2 cut(s)	13, 1362
AciI	CCGC	4 cut(s)	11, 13, 124, 1360
AclWI	GGATC	3 cut(s)	146, 470, 790
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	774, 927, 1208
AcuI	CTGAAG	3 cut(s)	693, 1080, 1220
AdeI	CACNNNGTG	2 cut(s)	606, 1187
AfaI	GTAC	2 cut(s)	128, 942
AfiI	CCNNNNNNNGG	2 cut(s)	156, 1156
AgsI	TTSAA	6 cut(s)	278, 325, 644, 663, 1023, 1373
AjiI	CACGTC	1 cut(s)	27
AluBI	AGCT	4 cut(s)	211, 321, 620, 1178
AluI	AGCT	4 cut(s)	211, 321, 620, 1178
Alw26I	GTCTC	2 cut(s)	51, 1369
AlwI	GGATC	3 cut(s)	146, 470, 790
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	6 cut(s)	211, 491, 741, 905, 1178, 1320
ApoI	RAATTY	3 cut(s)	774, 927, 1208
AseI	ATTAAT	1 cut(s)	1281
Asp700I	GAANNNNTTC	2 cut(s)	447, 1233
Asp718I	GGTACC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	1147
AsuHPI	GGTGA	3 cut(s)	536, 648, 1107
AvaII	GGWCC	1 cut(s)	1147
BaeGI	GKGCMC	2 cut(s)	235, 1352
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	2 cut(s)	126, 232
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	472, 829
BbvI	GCAGC	6 cut(s)	198, 478, 753, 892, 1165, 1332
BceAI	ACGGC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BcoDI	GTCTC	2 cut(s)	51, 1369
BfaI	CTAG	4 cut(s)	405, 837, 1074, 1140
BfmI	CTRYAG	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	7 cut(s)	212, 492, 742, 906, 1179, 1321, 1360
BlsI	GCNGC	7 cut(s)	213, 493, 743, 907, 1180, 1322, 1361
Bme18I	GGWCC	1 cut(s)	1147
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	1147
BmiI	GGNNCC	4 cut(s)	9, 128, 234, 889
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	1315
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	2 cut(s)	472, 829
BpuEI	CTTGAG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	717
BsaJI	CCNNGG	3 cut(s)	11, 474, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 1156
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	2 cut(s)	233, 689
Bse8I	GATNNNNATC	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	11, 474, 1015
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	2 cut(s)	156, 1156
BseMII	CTCAG	1 cut(s)	1198
BseNI	ACTGG	2 cut(s)	233, 689
BseRI	GAGGAG	2 cut(s)	858, 1286
BseSI	GKGCMC	2 cut(s)	235, 1352
BseXI	GCAGC	6 cut(s)	198, 478, 753, 892, 1165, 1332
BsgI	GTGCAG	3 cut(s)	753, 1107, 1164
Bsh1236I	CGCG	2 cut(s)	13, 1362
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	2 cut(s)	126, 232
BsiSI	CCGG	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	156, 1156
BsmAI	GTCTC	2 cut(s)	51, 1369
BsmBI	CGTCTC	1 cut(s)	1369
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	235, 1352
Bsp143I	GATC	6 cut(s)	138, 220, 462, 718, 795, 1142
Bsp19I	CCATGG	2 cut(s)	474, 1015
BspACI	CCGC	4 cut(s)	11, 13, 124, 1360
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	1197
BspFNI	CGCG	2 cut(s)	13, 1362
BspLI	GGNNCC	4 cut(s)	9, 128, 234, 889
BspMAI	CTGCAG	1 cut(s)	750
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	3 cut(s)	146, 470, 790
BspT107I	GGYRCC	2 cut(s)	126, 232
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	2 cut(s)	233, 689
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	3 cut(s)	11, 474, 1015
BssMI	GATC	6 cut(s)	138, 220, 462, 718, 795, 1142
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	474, 1015
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	261, 828, 1080
Bst6I	CTCTTC	3 cut(s)	63, 513, 876
BstAPI	GCANNNNNTGC	1 cut(s)	1326
BstC8I	GCNNGC	4 cut(s)	746, 1176, 1217, 1304
BstDEI	CTNAG	3 cut(s)	697, 814, 1184
BstDSI	CCRYGG	3 cut(s)	11, 474, 1015
BstENI	CCTNNNNNAGG	1 cut(s)	1154
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	2 cut(s)	13, 1362
BstKTI	GATC	6 cut(s)	141, 223, 465, 721, 798, 1145
BstMAI	GTCTC	2 cut(s)	51, 1369
BstMBI	GATC	6 cut(s)	138, 220, 462, 718, 795, 1142
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 251, 1326, 1356
BstNSI	RCATGY	2 cut(s)	422, 635
BstSFI	CTRYAG	1 cut(s)	746
BstSLI	GKGCMC	2 cut(s)	235, 1352
BstUI	CGCG	2 cut(s)	13, 1362
BstV1I	GCAGC	6 cut(s)	198, 478, 753, 892, 1165, 1332
BstV2I	GAAGAC	2 cut(s)	472, 829
BstX2I	RGATCY	2 cut(s)	462, 795
BstYI	RGATCY	2 cut(s)	462, 795
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	3 cut(s)	11, 474, 1015
BtgZI	GCGATG	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	1192
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	4 cut(s)	746, 1176, 1217, 1304
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	1 cut(s)	1147
Cfr42I	CCGCGG	1 cut(s)	14
CseI	GACGC	1 cut(s)	1351
Csp6I	GTAC	2 cut(s)	127, 941
CviQI	GTAC	2 cut(s)	127, 941
DdeI	CTNAG	3 cut(s)	697, 814, 1184
DpnI	GATC	6 cut(s)	140, 222, 464, 720, 797, 1144
DpnII	GATC	6 cut(s)	138, 220, 462, 718, 795, 1142
DraIII	CACNNNGTG	2 cut(s)	606, 1187
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	63, 513, 876
EarI	CTCTTC	3 cut(s)	63, 513, 876
Eco130I	CCWWGG	2 cut(s)	474, 1015
Eco47I	GGWCC	1 cut(s)	1147
Eco57I	CTGAAG	3 cut(s)	693, 1080, 1220
EcoNI	CCTNNNNNAGG	1 cut(s)	1154
EcoT14I	CCWWGG	2 cut(s)	474, 1015
ErhI	CCWWGG	2 cut(s)	474, 1015
Esp3I	CGTCTC	1 cut(s)	1369
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	563
FauNDI	CATATG	1 cut(s)	1355
Fnu4HI	GCNGC	7 cut(s)	212, 492, 742, 906, 1179, 1321, 1360
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	7 cut(s)	212, 492, 742, 906, 1179, 1321, 1360
FspBI	CTAG	4 cut(s)	405, 837, 1074, 1140
GluI	GCNGC	7 cut(s)	212, 492, 742, 906, 1179, 1321, 1360
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	891
HgaI	GACGC	1 cut(s)	1351
HindIII	AAGCTT	1 cut(s)	319
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	3 cut(s)	536, 648, 1107
Hpy166II	GTNNAC	3 cut(s)	656, 761, 943
Hpy188I	TCNGA	3 cut(s)	712, 1147, 1239
Hpy8I	GTNNAC	3 cut(s)	656, 761, 943
HpyAV	CCTTC	3 cut(s)	669, 1046, 1304
HpyCH4III	ACNGT	3 cut(s)	261, 828, 1080
HpyCH4IV	ACGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 251, 1326, 1356
HpyF3I	CTNAG	3 cut(s)	697, 814, 1184
HpySE526I	ACGT	1 cut(s)	26
KpnI	GGTACC	1 cut(s)	130
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	6 cut(s)	138, 220, 462, 718, 795, 1142
LmnI	GCTCC	3 cut(s)	208, 887, 1273
Lsp1109I	GCAGC	6 cut(s)	198, 478, 753, 892, 1165, 1332
LweI	GCATC	1 cut(s)	1315
MaeI	CTAG	4 cut(s)	405, 837, 1074, 1140
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	6 cut(s)	140, 222, 464, 720, 797, 1144
MboI	GATC	6 cut(s)	138, 220, 462, 718, 795, 1142
MflI	RGATCY	2 cut(s)	462, 795
MhlI	GDGCHC	2 cut(s)	235, 1352
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	6 cut(s)	363, 570, 774, 849, 927, 1208
MluNI	TGGCCA	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	333
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	447, 1233
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	4 cut(s)	105, 561, 917, 1281
MslI	CAYNNNNRTG	2 cut(s)	423, 630
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	891
MvnI	CGCG	2 cut(s)	13, 1362
MwoI	GCNNNNNNNGC	4 cut(s)	176, 251, 1326, 1356
NcoI	CCATGG	2 cut(s)	474, 1015
NdeI	CATATG	1 cut(s)	1355
NdeII	GATC	6 cut(s)	138, 220, 462, 718, 795, 1142
NlaIV	GGNNCC	4 cut(s)	9, 128, 234, 889
NspI	RCATGY	2 cut(s)	422, 635
PdmI	GAANNNNTTC	2 cut(s)	447, 1233
PkrI	GCNGC	7 cut(s)	213, 493, 743, 907, 1180, 1322, 1361
PshBI	ATTAAT	1 cut(s)	1281
PspN4I	GGNNCC	4 cut(s)	9, 128, 234, 889
PspPI	GGNCC	1 cut(s)	1147
PsrI	GAACNNNNNNTAC	2 cut(s)	989, 1021
PstI	CTGCAG	1 cut(s)	750
PsuI	RGATCY	2 cut(s)	462, 795
RsaI	GTAC	2 cut(s)	128, 942
RsaNI	GTAC	2 cut(s)	127, 941
RseI	CAYNNNNRTG	2 cut(s)	423, 630
SacII	CCGCGG	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	105, 561, 917, 1281
SatI	GCNGC	7 cut(s)	212, 492, 742, 906, 1179, 1321, 1360
Sau3AI	GATC	6 cut(s)	138, 220, 462, 718, 795, 1142
Sau96I	GGNCC	1 cut(s)	1147
SbfI	CCTGCAGG	1 cut(s)	750
SdaI	CCTGCAGG	1 cut(s)	750
SduI	GDGCHC	2 cut(s)	235, 1352
SfaNI	GCATC	1 cut(s)	1315
SfcI	CTRYAG	1 cut(s)	746
Sfr303I	CCGCGG	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	1147
SmiMI	CAYNNNNRTG	2 cut(s)	423, 630
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse8387I	CCTGCAGG	1 cut(s)	750
Sse9I	AATT	6 cut(s)	363, 570, 774, 849, 927, 1208
SsiI	CCGC	4 cut(s)	11, 13, 124, 1360
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	4 cut(s)	405, 837, 1074, 1140
StyI	CCWWGG	2 cut(s)	474, 1015
TaaI	ACNGT	3 cut(s)	261, 828, 1080
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	5 cut(s)	1043, 1060, 1258, 1269, 1378
TasI	AATT	6 cut(s)	363, 570, 774, 849, 927, 1208
TatI	WGTACW	1 cut(s)	940
TauI	GCSGC	1 cut(s)	1362
Tru1I	TTAA	4 cut(s)	105, 561, 917, 1281
Tru9I	TTAA	4 cut(s)	105, 561, 917, 1281
TscAI	CASTG	1 cut(s)	1192
TseI	GCWGC	6 cut(s)	211, 491, 741, 905, 1178, 1320
TspDTI	ATGAA	5 cut(s)	230, 729, 785, 1242, 1257
TspRI	CASTG	1 cut(s)	1192
VpaK11BI	GGWCC	1 cut(s)	1147
VspI	ATTAAT	1 cut(s)	1281
XagI	CCTNNNNNAGG	1 cut(s)	1154
XapI	RAATTY	3 cut(s)	774, 927, 1208
XceI	RCATGY	2 cut(s)	422, 635
XmnI	GAANNNNTTC	2 cut(s)	447, 1233
XspI	CTAG	4 cut(s)	405, 837, 1074, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.