Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004923

Physical Location & Seq

Genomic Coordinates Reverse (-)

46489513 .. 46492194

Gene Structure 2682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0290500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGATAGTGAAAAGAGACATTAGAGCTGCTTACAGAAGGTTATACTTATATAAGAATCAAGTTGCTAAACGGCGGATCTCAATTACACTTCAGTTCTATAGTCAACCCCCCGCAACTGGCTCAAAGACAGGCAATGATGTACTTTTGGCGCTGATGAAGCAGTTATGCGACACCAATGAAATTCATGCATCATCAGTTTTGAAGATCCGATATGCAGAAATGGAATCCATAAGAGTATATCTCTTACTTTCTCTTCTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

87

Amino Acids

10.09

Weight (kDa)

10.0

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68820 AT1G68820 AT1G68820 AT1G68820
fragaria_vesca	FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120
malus_domestica	MD13G1047000.v1.1 MD16G1048600.v1.1
prunus_persica	Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1
pyrus_communis	pycom13g04110 pycom16g04250
rosa_chinensis	RchiOBHm_Chr4g0435891
rosa_laevigata	RLG00000006552
rosa_multiflora	Rmu_sc0003165.1_g000009
rosa_roxburghii	Rroxscaffold_5G00377060
rosa_rugosa	Rorug04G0290300 Rorug04G0290400 Rorug04G0290500 Rorug04G0290600
rosa_samantha	Rh4AG344800 Rh4BG353600 Rh4CG368000 Rh4DG347400
rosa_wichuraiana	Rw4G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	73, 111
AclWI	GGATC	2 cut(s)	83, 199
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	83, 199
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	75, 204
BspACI	CCGC	2 cut(s)	73, 111
BspPI	GGATC	2 cut(s)	83, 199
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	75, 204
Bst6I	CTCTTC	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	78, 207
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	75, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	2 cut(s)	75, 204
BstYI	RGATCY	2 cut(s)	75, 204
CfoI	GCGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	2 cut(s)	26, 120
CviKI_1	RGCY	2 cut(s)	26, 120
CviQI	GTAC	1 cut(s)	140
DpnI	GATC	2 cut(s)	77, 206
DpnII	GATC	2 cut(s)	75, 204
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	190
FaeI	CATG	1 cut(s)	188
FaiI	YATR	9 cut(s)	43, 49, 51, 99, 166, 186, 213, 230, 238
FatI	CATG	1 cut(s)	184
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	152
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	55, 224
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	188, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	75, 204
LpnPI	CCDG	2 cut(s)	102, 114
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	197
MalI	GATC	2 cut(s)	77, 206
MboI	GATC	2 cut(s)	75, 204
MboII	GAAGA	2 cut(s)	214, 245
MflI	RGATCY	2 cut(s)	75, 204
MluCI	AATT	2 cut(s)	81, 180
Mph1103I	ATGCAT	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	2 cut(s)	75, 204
NlaIII	CATG	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	55, 224
PkrI	GCNGC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	75, 204
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	75, 204
SetI	ASST	2 cut(s)	28, 41
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	97
SgeI	CNNG	5 cut(s)	71, 122, 129, 141, 197
Sse9I	AATT	2 cut(s)	81, 180
SsiI	CCGC	2 cut(s)	73, 111
TasI	AATT	2 cut(s)	81, 180
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	55, 224
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	170, 173, 192
XapI	RAATTY	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.