MD16G1048600.v1.1

Transmembrane Fragile-X-F protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
3412774 .. 3418097
5324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1048600.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGTTGGTTCAGAGGAGAGTGATGACGTGGCGGTCGGTGGCCAAGTCTCTCCAAACACTTGTCGCCCACGCGTCGCTTTTCACGTTCACGACTCTCCTCGTTCTCAAGCTCCACCGTTCCGTCCGCTACCCTTGGTGGATCATATTTTCCCCTCTCTGGCTGTTCCATGTAGTTGTAGCACGAGGCAGATTTTCGCTACCTGCTCCAAAGCTGCCTAATGATCGCAATTGGGCACCTTTTCATGCTGTCATGGCGACACCGTTGCTTGTCGCATTTGAACTAATGCTTTGTATATACCTTCAGAGCAGATATGTGTGTGCAGTTGTAAGCTTGAAGATTGTCTTTGCACCCTTGTTGGCATTTGAACTCGCAATTCTATTTGATAATGTCAGGATGTGTAAGGCTCTAATGCCTGGAGACGATGAACACGTAAACGATGATGTGATATGGGAAACGCTTCCTCACTTCTGGATTTCTATATCCATGGTCTTCTTTCTTGCTGCCACAGTATTCACTCTTTTAAAGATAAACGGTGATATTTCTGCTCTAGGCTGGTGGGACTTATTCATAAACTTTGGAATTGCACAGGGTTTTGCCTTTCTTGTTTGCACGAAGTGGTATAATCCAGCTATTCACAGACATGCTCACATTCAAGAACCCTGTTCATCTTCAATGAACGTAAGATACCTTGACTGGAATAGTGGCTTAGTCATTTCTTCAGATGAAGATCAAGACGAGACAGTAGTATGCAGCCTGCAGGATATCGGTGGGCATATTATGAAAGTTCCTCTAATCATTTTCCAGATCCTACTCTTTATGCACTTAGAGGGGAGGCCATCGGCTGCTAGGCATATCCCAATTCCAGTTCTTTTTGCTCCTCTTCTTTTACTGCAAGGAGTTGGTCTTTTGTTTTCCGCATATAGATTAACAGAGAAAATTGTTCTTTTAGTACATAATGGAGTTTTTTCTGTAAGATACGTGGACATAGCATCAAAAGTTCGCGAGTATTTTGGGTTCTATCGCCGTGGTTCAAGGTTATTGGGCTGGTGGTCGATTGACGAAGGAAGTCGAGAGGAACAGGCTAGACTGTATTGTGCAGGGGCTTCAGGGTACAACACTTTTTCACCCGATATAGTGAAGAAGTTGCCTAGATCGGACCTTGTTGAGGAGGTTTGGAAACTGCAAGCTGCACTCAGTGAGCAAACGGAAGTCACGAAATTTAGCCAGCAGGAGTACGAAAGACTTCAGAATGAAAAGATCCTATGTAGAGTATGCTTTGAAGAACAGATTAATATAGTCCTGCTTCCATGCCGGCATCACGTTCTTTGCAGCACTTGTTGTGAGAAGTGTAAAAAGTGCCCCATATGCCGTGTCTGCATTGAACAGCGACTGCCGATATATCATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

53.94

Weight (kDa)

8.39

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_185A PF10269 35 - 297 8.6e-92 Transmembrane Fragile-X-F protein
zf-C3HC4_3 PF13920 420 - 462 8.8e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 232
AccII CGCG 2 cut(s) 71, 1002
AciI CCGC 3 cut(s) 31, 124, 915
AclWI GGATC 3 cut(s) 146, 799, 1252
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 1217
AcuI CTGAAG 4 cut(s) 284, 702, 1089, 1229
AdeI CACNNNGTG 2 cut(s) 615, 1196
AfaI GTAC 3 cut(s) 951, 1112, 1235
AfiI CCNNNNNNNGG 2 cut(s) 156, 1165
AflIII ACRYGT 2 cut(s) 69, 427
AgsI TTSAA 8 cut(s) 278, 334, 365, 653, 672, 1032, 1280, 1382
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 5 cut(s) 109, 211, 330, 629, 1187
AluI AGCT 5 cut(s) 109, 211, 330, 629, 1187
Alw26I GTCTC 3 cut(s) 51, 411, 731
AlwI GGATC 3 cut(s) 146, 799, 1252
AlwNI CAGNNNCTG 1 cut(s) 1390
AoxI GGCC 2 cut(s) 39, 833
ApeKI GCWGC 6 cut(s) 211, 500, 750, 842, 1187, 1329
ApoI RAATTY 1 cut(s) 1217
AseI ATTAAT 1 cut(s) 1290
Asp700I GAANNNNTTC 2 cut(s) 456, 1242
AspS9I GGNCC 1 cut(s) 1156
AsuHPI GGTGA 2 cut(s) 545, 1116
AvaII GGWCC 1 cut(s) 1156
BaeGI GKGCMC 2 cut(s) 235, 1361
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 232
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 481
BbvI GCAGC 6 cut(s) 198, 487, 762, 829, 1174, 1341
BccI CCATC 1 cut(s) 844
BceAI ACGGC 2 cut(s) 1008, 1353
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 3 cut(s) 51, 411, 731
BfaI CTAG 4 cut(s) 548, 846, 1083, 1149
BfmI CTRYAG 1 cut(s) 755
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 6 cut(s) 212, 501, 751, 843, 1188, 1330
BlsI GCNGC 6 cut(s) 213, 502, 752, 844, 1189, 1331
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 1156
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 1156
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 2 cut(s) 998, 1324
BpiI GAAGAC 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 89
BsaAI YACGTR 2 cut(s) 430, 979
BsaBI GATNNNNATC 1 cut(s) 726
BsaJI CCNNGG 3 cut(s) 131, 483, 1024
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 1165
Bse118I RCCGGY 1 cut(s) 1311
Bse1I ACTGG 2 cut(s) 698, 863
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 3 cut(s) 131, 483, 1024
BseGI GGATG 1 cut(s) 399
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 2 cut(s) 156, 1165
BseMII CTCAG 1 cut(s) 1207
BseNI ACTGG 2 cut(s) 698, 863
BseRI GAGGAG 4 cut(s) 28, 86, 867, 1181
BseSI GKGCMC 2 cut(s) 235, 1361
BseXI GCAGC 6 cut(s) 198, 487, 762, 829, 1174, 1341
BsgI GTGCAG 3 cut(s) 339, 1116, 1173
Bsh1236I CGCG 2 cut(s) 71, 1002
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 41, 835
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 1312
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 2 cut(s) 156, 1165
BsmAI GTCTC 3 cut(s) 51, 411, 731
BsmBI CGTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 2 cut(s) 41, 835
Bsp1286I GDGCHC 2 cut(s) 235, 1361
Bsp143I GATC 6 cut(s) 138, 220, 727, 804, 1151, 1257
Bsp19I CCATGG 1 cut(s) 483
Bsp68I TCGCGA 1 cut(s) 1002
BspACI CCGC 3 cut(s) 31, 124, 915
BspANI GGCC 2 cut(s) 41, 835
BspCNI CTCAG 1 cut(s) 1206
BspFNI CGCG 2 cut(s) 71, 1002
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 759
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 3 cut(s) 146, 799, 1252
BspT107I GGYRCC 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 1311
BsrI ACTGG 2 cut(s) 698, 863
BssAI RCCGGY 1 cut(s) 1311
BssECI CCNNGG 3 cut(s) 131, 483, 1024
BssMI GATC 6 cut(s) 138, 220, 727, 804, 1151, 1257
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 131, 483
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 6 cut(s) 116, 261, 508, 533, 742, 1089
Bst6I CTCTTC 1 cut(s) 885
BstBAI YACGTR 2 cut(s) 430, 979
BstC8I GCNNGC 4 cut(s) 755, 1185, 1226, 1313
BstDEI CTNAG 3 cut(s) 706, 823, 1193
BstDSI CCRYGG 2 cut(s) 483, 1024
BstENI CCTNNNNNAGG 1 cut(s) 1163
BstF5I GGATG 1 cut(s) 399
BstFNI CGCG 2 cut(s) 71, 1002
BstKTI GATC 6 cut(s) 141, 223, 730, 807, 1154, 1260
BstMAI GTCTC 3 cut(s) 51, 411, 731
BstMBI GATC 6 cut(s) 138, 220, 727, 804, 1151, 1257
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 3 cut(s) 251, 1365, 1374
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 755
BstSLI GKGCMC 2 cut(s) 235, 1361
BstUI CGCG 2 cut(s) 71, 1002
BstV1I GCAGC 6 cut(s) 198, 487, 762, 829, 1174, 1341
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 2 cut(s) 804, 1257
BstYI RGATCY 2 cut(s) 804, 1257
BsuRI GGCC 2 cut(s) 41, 835
BtgI CCRYGG 2 cut(s) 483, 1024
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 1201
BtuMI TCGCGA 1 cut(s) 1002
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 4 cut(s) 755, 1185, 1226, 1313
CaiI CAGNNNCTG 1 cut(s) 1390
Cfr10I RCCGGY 1 cut(s) 1311
Cfr13I GGNCC 1 cut(s) 1156
CseI GACGC 1 cut(s) 60
Csp6I GTAC 3 cut(s) 950, 1111, 1234
CviAII CATG 7 cut(s) 167, 242, 250, 484, 641, 1308, 1403
CviQI GTAC 3 cut(s) 950, 1111, 1234
DdeI CTNAG 3 cut(s) 706, 823, 1193
DpnI GATC 6 cut(s) 140, 222, 729, 806, 1153, 1259
DpnII GATC 6 cut(s) 138, 220, 727, 804, 1151, 1257
DraI TTTAAA 1 cut(s) 522
DraIII CACNNNGTG 2 cut(s) 615, 1196
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 885
EarI CTCTTC 1 cut(s) 885
Eco130I CCWWGG 2 cut(s) 131, 483
Eco32I GATATC 1 cut(s) 763
Eco47I GGWCC 1 cut(s) 1156
Eco57I CTGAAG 4 cut(s) 284, 702, 1089, 1229
EcoNI CCTNNNNNAGG 1 cut(s) 1163
EcoRII CCWGG 1 cut(s) 412
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 2 cut(s) 131, 483
ErhI CCWWGG 2 cut(s) 131, 483
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 7 cut(s) 170, 245, 253, 487, 644, 1311, 1406
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 572
FatI CATG 7 cut(s) 166, 241, 249, 483, 640, 1307, 1402
FauNDI CATATG 1 cut(s) 1364
Fnu4HI GCNGC 6 cut(s) 212, 501, 751, 843, 1188, 1330
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 6 cut(s) 212, 501, 751, 843, 1188, 1330
FspBI CTAG 4 cut(s) 548, 846, 1083, 1149
GluI GCNGC 6 cut(s) 212, 501, 751, 843, 1188, 1330
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 2 cut(s) 41, 835
HapII CCGG 1 cut(s) 1312
HgaI GACGC 1 cut(s) 60
Hin1II CATG 7 cut(s) 170, 245, 253, 487, 644, 1311, 1406
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 1312
HphI GGTGA 2 cut(s) 545, 1116
Hpy166II GTNNAC 3 cut(s) 87, 433, 982
Hpy188I TCNGA 5 cut(s) 12, 303, 721, 1156, 1248
Hpy188III TCNNGA 9 cut(s) 88, 391, 469, 653, 731, 802, 1001, 1070, 1213
Hpy8I GTNNAC 3 cut(s) 87, 433, 982
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 308, 1055
HpyCH4III ACNGT 6 cut(s) 116, 261, 508, 533, 742, 1089
HpyCH4IV ACGT 6 cut(s) 26, 83, 429, 678, 978, 1320
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 1365, 1374
HpyF3I CTNAG 3 cut(s) 706, 823, 1193
HpySE526I ACGT 6 cut(s) 26, 83, 429, 678, 978, 1320
Hsp92II CATG 7 cut(s) 170, 245, 253, 487, 644, 1311, 1406
KroI GCCGGC 1 cut(s) 1311
KroNI GCCGGC 1 cut(s) 1313
Kzo9I GATC 6 cut(s) 138, 220, 727, 804, 1151, 1257
LmnI GCTCC 3 cut(s) 114, 208, 880
Lsp1109I GCAGC 6 cut(s) 198, 487, 762, 829, 1174, 1341
LweI GCATC 2 cut(s) 998, 1324
MaeI CTAG 4 cut(s) 548, 846, 1083, 1149
MaeII ACGT 6 cut(s) 26, 83, 429, 678, 978, 1320
MaeIII GTNAC 1 cut(s) 1210
MalI GATC 6 cut(s) 140, 222, 729, 806, 1153, 1259
MboI GATC 6 cut(s) 138, 220, 727, 804, 1151, 1257
MboII GAAGA 8 cut(s) 346, 481, 660, 708, 737, 872, 1150, 1292
MfeI CAATTG 1 cut(s) 226
MflI RGATCY 2 cut(s) 804, 1257
MhlI GDGCHC 2 cut(s) 235, 1361
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 6 cut(s) 226, 372, 579, 858, 936, 1217
MluI ACGCGT 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 85
Mox20I TGGCCA 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 1311
MroXI GAANNNNTTC 2 cut(s) 456, 1242
MscI TGGCCA 1 cut(s) 41
MseI TTAA 3 cut(s) 521, 926, 1290
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 41
MspI CCGG 1 cut(s) 1312
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 414
MvnI CGCG 2 cut(s) 71, 1002
MwoI GCNNNNNNNGC 3 cut(s) 251, 1365, 1374
NaeI GCCGGC 1 cut(s) 1313
NcoI CCATGG 1 cut(s) 483
NdeI CATATG 1 cut(s) 1364
NdeII GATC 6 cut(s) 138, 220, 727, 804, 1151, 1257
NgoMIV GCCGGC 1 cut(s) 1311
NlaIII CATG 7 cut(s) 170, 245, 253, 487, 644, 1311, 1406
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 1210
NruI TCGCGA 1 cut(s) 1002
NspI RCATGY 1 cut(s) 644
PcsI WCGNNNNNNNCGW 3 cut(s) 80, 426, 1211
PdiI GCCGGC 1 cut(s) 1313
PdmI GAANNNNTTC 2 cut(s) 456, 1242
PkrI GCNGC 6 cut(s) 213, 502, 752, 844, 1189, 1331
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 2 cut(s) 430, 979
PshBI ATTAAT 1 cut(s) 1290
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 1156
PsrI GAACNNNNNNTAC 4 cut(s) 668, 700, 998, 1030
PstI CTGCAG 1 cut(s) 759
PstNI CAGNNNCTG 1 cut(s) 1390
PsuI RGATCY 2 cut(s) 804, 1257
RruI TCGCGA 1 cut(s) 1002
RsaI GTAC 3 cut(s) 951, 1112, 1235
RsaNI GTAC 3 cut(s) 950, 1111, 1234
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 3 cut(s) 521, 926, 1290
SatI GCNGC 6 cut(s) 212, 501, 751, 843, 1188, 1330
Sau3AI GATC 6 cut(s) 138, 220, 727, 804, 1151, 1257
Sau96I GGNCC 1 cut(s) 1156
SbfI CCTGCAGG 1 cut(s) 759
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 414
SdaI CCTGCAGG 1 cut(s) 759
SduI GDGCHC 2 cut(s) 235, 1361
SfaNI GCATC 2 cut(s) 998, 1324
SfcI CTRYAG 1 cut(s) 755
SinI GGWCC 1 cut(s) 1156
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse8387I CCTGCAGG 1 cut(s) 759
Sse9I AATT 6 cut(s) 226, 372, 579, 858, 936, 1217
SsiI CCGC 3 cut(s) 31, 124, 915
SspMI CTAG 4 cut(s) 548, 846, 1083, 1149
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 2 cut(s) 131, 483
TaaI ACNGT 6 cut(s) 116, 261, 508, 533, 742, 1089
TaiI ACGT 6 cut(s) 29, 86, 432, 681, 981, 1323
TaqI TCGA 2 cut(s) 1052, 1069
TasI AATT 6 cut(s) 226, 372, 579, 858, 936, 1217
TatI WGTACW 1 cut(s) 949
Tru1I TTAA 3 cut(s) 521, 926, 1290
Tru9I TTAA 3 cut(s) 521, 926, 1290
TscAI CASTG 1 cut(s) 1201
TseFI GTSAC 1 cut(s) 1210
TseI GCWGC 6 cut(s) 211, 500, 750, 842, 1187, 1329
Tsp45I GTSAC 1 cut(s) 1210
TspDTI ATGAA 8 cut(s) 230, 438, 556, 654, 689, 738, 794, 1266
TspGWI ACGGA 2 cut(s) 109, 1220
TspRI CASTG 1 cut(s) 1201
VpaK11BI GGWCC 1 cut(s) 1156
VspI ATTAAT 1 cut(s) 1290
XagI CCTNNNNNAGG 1 cut(s) 1163
XapI RAATTY 1 cut(s) 1217
XceI RCATGY 1 cut(s) 644
XmnI GAANNNNTTC 2 cut(s) 456, 1242
XspI CTAG 4 cut(s) 548, 846, 1083, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.