Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004923

Physical Location & Seq

Genomic Coordinates Reverse (-)

46496663 .. 46497618

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGGCGTGGTACTCCCCAGCTTTCCGGTGGCTGGAGGAGTTAGATTTCTCGTTGCCATCAGCTGGAAGTTTCAGGTGGCCGGGAGTGTTTGATTTCTCCTACTTTACTTCGGGGTGGAACTTGAACTTGTCGAGCTTCAGGATATGGTTCGATTTTTCTATAGTTGATGATGTGCTGTGGACCTTGGTGACTGTGGTGGAGTCCTTGGTTTTGGCTGCCATGCTCTGCTTCTTCTTTCTCTTCTGTGGTTGTACCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

87

Amino Acids

10.11

Weight (kDa)

4.05

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68820 AT1G68820 AT1G68820 AT1G68820
fragaria_vesca	FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120
malus_domestica	MD13G1047000.v1.1 MD16G1048600.v1.1
prunus_persica	Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1
pyrus_communis	pycom13g04110 pycom16g04250
rosa_chinensis	RchiOBHm_Chr4g0435891
rosa_laevigata	RLG00000006552
rosa_multiflora	Rmu_sc0003165.1_g000009
rosa_roxburghii	Rroxscaffold_5G00377060
rosa_rugosa	Rorug04G0290300 Rorug04G0290400 Rorug04G0290500 Rorug04G0290600
rosa_samantha	Rh4AG344800 Rh4BG353600 Rh4CG368000 Rh4DG347400
rosa_wichuraiana	Rw4G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	14, 256
AfiI	CCNNNNNNNGG	2 cut(s)	34, 65
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	3 cut(s)	23, 65, 138
AluI	AGCT	3 cut(s)	23, 65, 138
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	6, 219
BlsI	GCNGC	2 cut(s)	7, 220
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	186, 207
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 65
BseDI	CCNNGG	2 cut(s)	186, 207
BseLI	CCNNNNNNNGG	2 cut(s)	34, 65
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	28, 83
BslI	CCNNNNNNNGG	2 cut(s)	34, 65
BsnI	GGCC	1 cut(s)	82
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	186, 207
BssT1I	CCWWGG	2 cut(s)	186, 207
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	13, 255
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	6 cut(s)	23, 34, 65, 82, 138, 218
CviKI_1	RGCY	6 cut(s)	23, 34, 65, 82, 138, 218
CviQI	GTAC	2 cut(s)	13, 255
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	186, 207
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	186, 207
ErhI	CCWWGG	2 cut(s)	186, 207
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	148, 164, 224
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	6, 219
Fsp4HI	GCNGC	2 cut(s)	6, 219
GluI	GCNGC	2 cut(s)	6, 219
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	28, 83
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	2 cut(s)	28, 83
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	20, 33, 41, 51, 61, 96, 127
Lsp1109I	GCAGC	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	226, 235
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	31
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	28, 83
MspR9I	CCNGG	1 cut(s)	84
NciI	CCSGG	1 cut(s)	84
NlaIII	CATG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	7, 220
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	14, 256
RsaNI	GTAC	2 cut(s)	13, 255
SatI	GCNGC	2 cut(s)	6, 219
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	5 cut(s)	25, 67, 80, 140, 188
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	183
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	2 cut(s)	186, 207
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	134, 153
TauI	GCSGC	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	190
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.