Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004923

Physical Location & Seq

Genomic Coordinates Forward (+)

8381971 .. 8387095

Gene Structure 5125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGACGTGGCGCTCCGTGGCCAAGTCCCTGCAAGCTCTTGCGGCGCATGCCCTGCTTTTCACATTCACCGTTTTCCTCGTCCTCCGCCTCCACCATGCCGTCCGCTACCACTGGTGGATCATACTCTCCCCTCTGTGGCTTTTCCATGCAGTTGTAGCAAGAGGCAGATTCTCATTACCAGCTCCAGTGCCACCTAATGATCGTCATTGGGCGCCACTTCATGCTGTCATGGCAACCCCCTTGCTCGTTGCGTTTGAACTACTGCTTTGTATATATCTAGAGAACAGATACGTTGTAAGCTTGAAGATTGTCTTTGTGCCATTGTTGGCGTTTGAACTTGCAATTTTATTTGACAATGTCAGGATGTGTAAGGCTCTAATGCCTAGTGATGATGACACCATGAGCGATGACGTGATATGGGAAACTCTTCCTCACTTCTGGATTTCTATATCTATGGTCTTCCTTATTGCTGCCACAACATTCACTCTTCTAAAGATAAATGGTGATATTTCTGCTCTAGGCTGGTGGGACTTATTTATAAACTTTGGCATTGCACAGATGTTTGCCTTTCTTGTTTGCACAAAGTGGTATAATCCAGCAATTCACAGACATGCTCACTCTGGAGAAGCTTGTTCATCTTCAGTGACCATAAGATATCTTGATTGGAATAGAGGCTTTGTAGTTTCTTCAGAAGAAGACCAAGAAGAGAGTAGAATATGCAGCCTGCAGGATATTGGTGGACATATTATGAAAATTCCTCTAATCACTTTCCAGATTCTACTGTTTATGCGCTTAGAGGGAACACCACCCGGTGCTAGTCAAATCTCAATTCCACTTCTTTTTGCTCCTCTTCTTTTACTGCAAGGAGCTGGTGTTTTATACGCTGCATATAGGTTGATAGAGAAAATTGTACTTTTAGTACGTAGTGGAGTTGTTTCTGAAAGATACTTGGTCATAACATCAAAAGTTCGTGATTATTTTGGGTTCCTGCGTCATGGTTCTAGGTTTCTGGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAGGAACAAGCTAGACTGTATTCCGCTGGAGCTTCAGGGTACAACACTTTCTCACCTGATGTAGTGAAGAAGATGCCTAGGTCGGACCTTGTTGAGGAGATTTGGAAACTGCAAGCTGCACTTAGTGAGCAAACAGAAATCACGAAATTTAGCCAGCAGGAGTATGAAAGACTTCAGAATGAAAAGATCCTATGCAGAGTATGCTTTGAAGAACAGATTAATATAGTCCTCCTCCCATGCAGGCATCATGTGCTTTGCAGCTCTTGCTGTGAGAAGTGTAAAAAGTGCCCCATATGCCGGGTCTGTATTGAACAGAGACTCCCGATATATCATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

460

Amino Acids

52.59

Weight (kDa)

7.57

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_185A	PF10269	28 - 287	4.5e-89	Transmembrane Fragile-X-F protein
zf-C3HC4_3	PF13920	410 - 452	7.1e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68820 AT1G68820 AT1G68820 AT1G68820
fragaria_vesca	FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120
malus_domestica	MD13G1047000.v1.1 MD16G1048600.v1.1
prunus_persica	Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1
pyrus_communis	pycom13g04110 pycom16g04250
rosa_chinensis	RchiOBHm_Chr4g0435891
rosa_laevigata	RLG00000006552
rosa_multiflora	Rmu_sc0003165.1_g000009
rosa_roxburghii	Rroxscaffold_5G00377060
rosa_rugosa	Rorug04G0290300 Rorug04G0290400 Rorug04G0290500 Rorug04G0290600
rosa_samantha	Rh4AG344800 Rh4BG353600 Rh4CG368000 Rh4DG347400
rosa_wichuraiana	Rw4G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	4 cut(s)	41, 85, 103, 1065
AclWI	GGATC	2 cut(s)	125, 1222
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	753, 1187
AcuI	CTGAAG	4 cut(s)	624, 672, 1059, 1199
AcyI	GRCGYC	1 cut(s)	212
AdeI	CACNNNGTG	3 cut(s)	585, 812, 1166
AfaI	GTAC	3 cut(s)	912, 921, 1082
AfiI	CCNNNNNNNGG	3 cut(s)	135, 1135, 1338
AgsI	TTSAA	5 cut(s)	257, 304, 335, 1250, 1352
AjiI	CACGTC	2 cut(s)	6, 412
AloI	GAACNNNNNNTCC	2 cut(s)	1344, 1376
AluBI	AGCT	9 cut(s)	35, 182, 300, 629, 869, 1052, 1073, 1157, 1302
AluI	AGCT	9 cut(s)	35, 182, 300, 629, 869, 1052, 1073, 1157, 1302
Alw26I	GTCTC	1 cut(s)	1351
AlwI	GGATC	2 cut(s)	125, 1222
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	5 cut(s)	470, 720, 884, 1157, 1299
ApoI	RAATTY	2 cut(s)	753, 1187
AseI	ATTAAT	1 cut(s)	1260
Asp700I	GAANNNNTTC	2 cut(s)	426, 1212
AspA2I	CCTAGG	1 cut(s)	1118
AspLEI	GCGC	4 cut(s)	12, 46, 214, 792
AspS9I	GGNCC	1 cut(s)	1126
AsuC2I	CCSGG	2 cut(s)	810, 1340
AsuHPI	GGTGA	3 cut(s)	58, 515, 1086
AvaII	GGWCC	1 cut(s)	1126
AvrII	CCTAGG	1 cut(s)	1118
BaeGI	GKGCMC	1 cut(s)	1331
BalI	TGGCCA	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	211
BbsI	GAAGAC	2 cut(s)	451, 702
BbvI	GCAGC	5 cut(s)	457, 732, 871, 1144, 1311
BceAI	ACGGC	1 cut(s)	83
BcnI	CCSGG	2 cut(s)	810, 1340
BcoDI	GTCTC	1 cut(s)	1351
BfaI	CTAG	7 cut(s)	278, 384, 518, 816, 1002, 1053, 1119
BfmI	CTRYAG	1 cut(s)	725
BfoI	RGCGCY	2 cut(s)	13, 215
BisI	GCNGC	6 cut(s)	42, 471, 721, 885, 1158, 1300
BlnI	CCTAGG	1 cut(s)	1118
BlsI	GCNGC	6 cut(s)	43, 472, 722, 886, 1159, 1301
Bme1390I	CCNGG	2 cut(s)	810, 1340
Bme18I	GGWCC	1 cut(s)	1126
BmgBI	CACGTC	2 cut(s)	6, 412
BmgT120I	GGNCC	1 cut(s)	1126
BmiI	GGNNCC	2 cut(s)	213, 986
BmrFI	CCNGG	2 cut(s)	810, 1340
BmsI	GCATC	2 cut(s)	1104, 1294
BpiI	GAAGAC	2 cut(s)	451, 702
BpmI	CTGGAG	3 cut(s)	168, 642, 1089
BpuMI	CCSGG	2 cut(s)	810, 1340
BsaAI	YACGTR	1 cut(s)	923
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	15, 1118
BsaXI	ACNNNNNCTCC	4 cut(s)	858, 888, 1344, 1374
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 1135, 1338
Bse1I	ACTGG	2 cut(s)	116, 185
Bse3DI	GCAATG	1 cut(s)	549
BseDI	CCNNGG	2 cut(s)	15, 1118
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	135, 1135, 1338
BseMI	GCAATG	1 cut(s)	549
BseNI	ACTGG	2 cut(s)	116, 185
BseRI	GAGGAG	3 cut(s)	837, 1151, 1262
BseSI	GKGCMC	1 cut(s)	1331
BseXI	GCAGC	5 cut(s)	457, 732, 871, 1144, 1311
BsgI	GTGCAG	1 cut(s)	1143
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	810, 1339
BslFI	GGGAC	2 cut(s)	10, 542
BslI	CCNNNNNNNGG	3 cut(s)	135, 1135, 1338
BsmAI	GTCTC	1 cut(s)	1351
BsmFI	GGGAC	2 cut(s)	10, 542
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	1331
Bsp143I	GATC	3 cut(s)	117, 199, 1227
BspACI	CCGC	4 cut(s)	41, 85, 103, 1065
BspANI	GGCC	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	213, 986
BspMAI	CTGCAG	1 cut(s)	729
BspPI	GGATC	2 cut(s)	125, 1222
BspT107I	GGYRCC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	116, 185
BssECI	CCNNGG	2 cut(s)	15, 1118
BssMI	GATC	3 cut(s)	117, 199, 1227
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	1118
Bst4CI	ACNGT	3 cut(s)	70, 783, 1059
Bst6I	CTCTTC	4 cut(s)	432, 492, 699, 855
BstACI	GRCGYC	1 cut(s)	212
BstAPI	GCANNNNNTGC	4 cut(s)	52, 1242, 1291, 1305
BstBAI	YACGTR	1 cut(s)	923
BstC8I	GCNNGC	6 cut(s)	33, 48, 725, 1155, 1196, 1283
BstDEI	CTNAG	2 cut(s)	793, 1163
BstDSI	CCRYGG	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	1133
BstF5I	GGATG	1 cut(s)	369
BstH2I	RGCGCY	2 cut(s)	13, 215
BstHHI	GCGC	4 cut(s)	12, 46, 214, 792
BstKTI	GATC	3 cut(s)	120, 202, 1230
BstMAI	GTCTC	1 cut(s)	1351
BstMBI	GATC	3 cut(s)	117, 199, 1227
BstMWI	GCNNNNNNNGC	9 cut(s)	41, 47, 52, 155, 230, 1242, 1291, 1305, 1335
BstNSI	RCATGY	2 cut(s)	50, 614
BstSCI	CCNGG	2 cut(s)	808, 1338
BstSFI	CTRYAG	1 cut(s)	725
BstSLI	GKGCMC	1 cut(s)	1331
BstSNI	TACGTA	1 cut(s)	923
BstV1I	GCAGC	5 cut(s)	457, 732, 871, 1144, 1311
BstV2I	GAAGAC	2 cut(s)	451, 702
BstX2I	RGATCY	1 cut(s)	1227
BstYI	RGATCY	1 cut(s)	1227
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	420
BtrI	CACGTC	2 cut(s)	6, 412
BtsCI	GGATG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	109, 192, 648
Cac8I	GCNNGC	6 cut(s)	33, 48, 725, 1155, 1196, 1283
CfoI	GCGC	4 cut(s)	12, 46, 214, 792
Cfr13I	GGNCC	1 cut(s)	1126
CseI	GACGC	1 cut(s)	980
Csp6I	GTAC	3 cut(s)	911, 920, 1081
CviQI	GTAC	3 cut(s)	911, 920, 1081
DdeI	CTNAG	2 cut(s)	793, 1163
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	3 cut(s)	119, 201, 1229
DpnII	GATC	3 cut(s)	117, 199, 1227
DraIII	CACNNNGTG	3 cut(s)	585, 812, 1166
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	4 cut(s)	432, 492, 699, 855
EarI	CTCTTC	4 cut(s)	432, 492, 699, 855
EciI	GGCGGA	1 cut(s)	74
Eco105I	TACGTA	1 cut(s)	923
Eco130I	CCWWGG	1 cut(s)	1118
Eco32I	GATATC	1 cut(s)	656
Eco47I	GGWCC	1 cut(s)	1126
Eco57I	CTGAAG	4 cut(s)	624, 672, 1059, 1199
EcoNI	CCTNNNNNAGG	1 cut(s)	1133
EcoRV	GATATC	1 cut(s)	656
EcoT14I	CCWWGG	1 cut(s)	1118
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	1118
FalI	AAGNNNNNCTT	4 cut(s)	296, 328, 1146, 1178
FaqI	GGGAC	2 cut(s)	10, 542
FauNDI	CATATG	1 cut(s)	1334
Fnu4HI	GCNGC	6 cut(s)	42, 471, 721, 885, 1158, 1300
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	6 cut(s)	42, 471, 721, 885, 1158, 1300
FspBI	CTAG	7 cut(s)	278, 384, 518, 816, 1002, 1053, 1119
GlaI	GCGC	4 cut(s)	11, 45, 213, 791
GluI	GCNGC	6 cut(s)	42, 471, 721, 885, 1158, 1300
GsuI	CTGGAG	3 cut(s)	168, 642, 1089
HaeII	RGCGCY	2 cut(s)	13, 215
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	2 cut(s)	810, 1339
HgaI	GACGC	1 cut(s)	980
HhaI	GCGC	4 cut(s)	12, 46, 214, 792
Hin1I	GRCGYC	1 cut(s)	212
Hin6I	GCGC	4 cut(s)	10, 44, 212, 790
HinP1I	GCGC	4 cut(s)	10, 44, 212, 790
HindIII	AAGCTT	2 cut(s)	298, 627
HinfI	GANTC	3 cut(s)	168, 775, 1359
HpaII	CCGG	2 cut(s)	810, 1339
HphI	GGTGA	3 cut(s)	58, 515, 1086
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	4 cut(s)	691, 940, 1126, 1218
Hpy8I	GTNNAC	1 cut(s)	740
HpyAV	CCTTC	1 cut(s)	1025
HpyCH4III	ACNGT	3 cut(s)	70, 783, 1059
HpyCH4IV	ACGT	4 cut(s)	5, 291, 411, 922
HpyF10VI	GCNNNNNNNGC	9 cut(s)	41, 47, 52, 155, 230, 1242, 1291, 1305, 1335
HpyF3I	CTNAG	2 cut(s)	793, 1163
HpySE526I	ACGT	4 cut(s)	5, 291, 411, 922
Hsp92I	GRCGYC	1 cut(s)	212
HspAI	GCGC	4 cut(s)	10, 44, 212, 790
KasI	GGCGCC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	117, 199, 1227
LmnI	GCTCC	5 cut(s)	17, 187, 850, 866, 1070
Lsp1109I	GCAGC	5 cut(s)	457, 732, 871, 1144, 1311
LweI	GCATC	2 cut(s)	1104, 1294
MaeI	CTAG	7 cut(s)	278, 384, 518, 816, 1002, 1053, 1119
MaeII	ACGT	4 cut(s)	5, 291, 411, 922
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	3 cut(s)	119, 201, 1229
MboI	GATC	3 cut(s)	117, 199, 1227
MfeI	CAATTG	1 cut(s)	1023
MflI	RGATCY	1 cut(s)	1227
MhlI	GDGCHC	1 cut(s)	1331
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	7 cut(s)	342, 600, 753, 828, 906, 1023, 1187
MluNI	TGGCCA	1 cut(s)	20
Mly113I	GGCGCC	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	1353
MmeI	TCCRAC	1 cut(s)	1104
Mox20I	TGGCCA	1 cut(s)	20
MroXI	GAANNNNTTC	2 cut(s)	426, 1212
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	1 cut(s)	1260
MslI	CAYNNNNRTG	1 cut(s)	609
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	1067
MspI	CCGG	2 cut(s)	810, 1339
MspR9I	CCNGG	2 cut(s)	810, 1340
MunI	CAATTG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	9 cut(s)	41, 47, 52, 155, 230, 1242, 1291, 1305, 1335
NarI	GGCGCC	1 cut(s)	212
NciI	CCSGG	2 cut(s)	810, 1340
NdeI	CATATG	1 cut(s)	1334
NdeII	GATC	3 cut(s)	117, 199, 1227
NlaIV	GGNNCC	2 cut(s)	213, 986
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	2 cut(s)	50, 614
PaeI	GCATGC	1 cut(s)	50
PdmI	GAANNNNTTC	2 cut(s)	426, 1212
PfeI	GAWTC	2 cut(s)	168, 775
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	6 cut(s)	43, 472, 722, 886, 1159, 1301
PleI	GAGTC	1 cut(s)	1353
PluTI	GGCGCC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	1353
Ppu21I	YACGTR	1 cut(s)	923
PshBI	ATTAAT	1 cut(s)	1260
PsiI	TTATAA	1 cut(s)	539
PspN4I	GGNNCC	2 cut(s)	213, 986
PspPI	GGNCC	1 cut(s)	1126
PstI	CTGCAG	1 cut(s)	729
PsuI	RGATCY	1 cut(s)	1227
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	3 cut(s)	912, 921, 1082
RsaNI	GTAC	3 cut(s)	911, 920, 1081
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	1260
SatI	GCNGC	6 cut(s)	42, 471, 721, 885, 1158, 1300
Sau3AI	GATC	3 cut(s)	117, 199, 1227
Sau96I	GGNCC	1 cut(s)	1126
SbfI	CCTGCAGG	1 cut(s)	729
SchI	GAGTC	1 cut(s)	1353
ScrFI	CCNGG	2 cut(s)	810, 1340
SdaI	CCTGCAGG	1 cut(s)	729
SduI	GDGCHC	1 cut(s)	1331
SfaNI	GCATC	2 cut(s)	1104, 1294
SfcI	CTRYAG	1 cut(s)	725
SfoI	GGCGCC	1 cut(s)	213
SinI	GGWCC	1 cut(s)	1126
SmiMI	CAYNNNNRTG	1 cut(s)	609
SnaBI	TACGTA	1 cut(s)	923
SphI	GCATGC	1 cut(s)	50
Sse8387I	CCTGCAGG	1 cut(s)	729
Sse9I	AATT	7 cut(s)	342, 600, 753, 828, 906, 1023, 1187
SsiI	CCGC	4 cut(s)	41, 85, 103, 1065
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	7 cut(s)	278, 384, 518, 816, 1002, 1053, 1119
StyD4I	CCNGG	2 cut(s)	808, 1338
StyI	CCWWGG	1 cut(s)	1118
TaaI	ACNGT	3 cut(s)	70, 783, 1059
TaiI	ACGT	4 cut(s)	8, 294, 414, 925
TaqI	TCGA	1 cut(s)	1039
TasI	AATT	7 cut(s)	342, 600, 753, 828, 906, 1023, 1187
TatI	WGTACW	1 cut(s)	910
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	168, 775
Tru1I	TTAA	1 cut(s)	1260
Tru9I	TTAA	1 cut(s)	1260
TscAI	CASTG	3 cut(s)	116, 192, 648
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	5 cut(s)	470, 720, 884, 1157, 1299
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	6 cut(s)	209, 624, 764, 1044, 1221, 1236
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	3 cut(s)	116, 192, 648
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	1126
VspI	ATTAAT	1 cut(s)	1260
XagI	CCTNNNNNAGG	1 cut(s)	1133
XapI	RAATTY	2 cut(s)	753, 1187
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	2 cut(s)	50, 614
XmaJI	CCTAGG	1 cut(s)	1118
XmnI	GAANNNNTTC	2 cut(s)	426, 1212
XspI	CTAG	7 cut(s)	278, 384, 518, 816, 1002, 1053, 1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.