Rorug04G0290400

Transmembrane Fragile-X-F protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004923
Physical Location & Seq
Forward (+)
46479965 .. 46486131
6167 bp
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UTR
Exon/CDS
Intron
Rorug04G0290400.1

Sequence Viewer

Length: 327 bp
ATGCTTGAGGTTCATGCCAGTGGGGAAAGGCATACACCTGATGAAAGTTCTGCTGTTATGGATACTTCTGAGGGTCTCGTTAACATTGTCTGTTCTTCAAGCAGCCAAGTTGGAAACTTGAAGAACCTGCGCTATGGCGCTTGGGCGAAACAAGTAATTGTGTTGCTGAGTTTGGAGCATTATGCAACAAATTCTAAATTAGCTGACCTTGTCATTAATGGGCATTGGAGACAAGAAGAAAAAGGAATTTCATCTAGTAGAAGCTCAACTGTAGGCTTTGAAGGATCTCCTTTGTCTGCAGGAAGAAAGGAGGGCAGTTTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_185A zf-C3HC4_3

Protein Analysis

108

Amino Acids

11.6

Weight (kDa)

6.05

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 2 cut(s) 190, 246
AgsI TTSAA 3 cut(s) 99, 121, 281
AluBI AGCT 2 cut(s) 203, 264
AluI AGCT 2 cut(s) 203, 264
Alw26I GTCTC 2 cut(s) 80, 223
AlwI GGATC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 190, 246
AseI ATTAAT 1 cut(s) 216
AspLEI GCGC 2 cut(s) 132, 140
BbvI GCAGC 1 cut(s) 114
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 80, 223
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 2 cut(s) 270, 297
BfoI RGCGCY 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 135
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 60, 158
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 80, 223
Bso31I GGTCTC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 284, 321
BspCNI CTCAG 2 cut(s) 61, 159
BspMAI CTGCAG 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 18
BssMI GATC 2 cut(s) 284, 321
Bst4CI ACNGT 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 69, 167
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 132, 140
BstKTI GATC 2 cut(s) 287, 324
BstMAI GTCTC 2 cut(s) 80, 223
BstMBI GATC 2 cut(s) 284, 321
BstSFI CTRYAG 2 cut(s) 270, 297
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuI GTATCC 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 135
CfoI GCGC 2 cut(s) 132, 140
CviAII CATG 1 cut(s) 14
CviJI RGCY 4 cut(s) 105, 203, 264, 276
CviKI_1 RGCY 4 cut(s) 105, 203, 264, 276
DdeI CTNAG 2 cut(s) 69, 167
DpnI GATC 2 cut(s) 286, 323
DpnII GATC 2 cut(s) 284, 321
Eco31I GGTCTC 1 cut(s) 80
FaeI CATG 1 cut(s) 17
FaiI YATR 5 cut(s) 15, 33, 59, 135, 183
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 1 cut(s) 255
GlaI GCGC 2 cut(s) 131, 139
GluI GCNGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 141
HhaI GCGC 2 cut(s) 132, 140
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 2 cut(s) 130, 138
HinP1I GCGC 2 cut(s) 130, 138
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HpaI GTTAAC 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 185, 299
HpyF3I CTNAG 2 cut(s) 69, 167
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 2 cut(s) 130, 138
KspAI GTTAAC 1 cut(s) 82
Kzo9I GATC 2 cut(s) 284, 321
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 4 cut(s) 31, 51, 140, 285
Lsp1109I GCAGC 1 cut(s) 114
MaeI CTAG 1 cut(s) 255
MalI GATC 2 cut(s) 286, 323
MboI GATC 2 cut(s) 284, 321
MboII GAAGA 4 cut(s) 87, 133, 248, 315
MflI RGATCY 1 cut(s) 284
MluCI AATT 4 cut(s) 156, 190, 197, 246
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 2 cut(s) 64, 304
MseI TTAA 2 cut(s) 81, 216
MslI CAYNNNNRTG 1 cut(s) 18
NdeII GATC 2 cut(s) 284, 321
NlaIII CATG 1 cut(s) 17
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 216
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 284
PsyI GACNNNGTC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 81, 216
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 2 cut(s) 284, 321
SetI ASST 6 cut(s) 12, 40, 129, 205, 210, 266
SfcI CTRYAG 2 cut(s) 270, 297
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 4 cut(s) 156, 190, 197, 246
SspMI CTAG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 271
TasI AATT 4 cut(s) 156, 190, 197, 246
Tru1I TTAA 2 cut(s) 81, 216
Tru9I TTAA 2 cut(s) 81, 216
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 57, 240
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 2 cut(s) 190, 246
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.