Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004923

Physical Location & Seq

Genomic Coordinates Reverse (-)

2751042 .. 2755565

Gene Structure 4524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04110.14

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGTTGGTTCAGAGGAGAGTGATGACGTGGAGATCGGTGGCCAAGTCTTTGCAAACACTTGTCGCCCACGCCTCCCTTTTCACGTTCACGATTCTCCTCGTTCTCAAACTCCACCGTTCCGTCCGCTACTCTTGGTGGATCATATTATCCCCTCTGTGGCTTTTCCATGTAGTTGTAGCACGAGGCAGATTTTCGTTACCTGCTCCAAAGCTCCCTAATGATCGCAATTGGGCACCTTTTCATGCTGTCATGGCGACACCATTGCTTGTCGCATTTGAACTAATGCTTTGTATATACCTTCAGAGCAGATATGTTGTAAGCTTGAAGATTGTCTTTGCACCCTTGTTGGCATTTGAACTAGCAATTCTATTTGATAATGTCAGGATGTGTAAGGCTCTAATGCCTGGAGACGATGAACATGCGAATGATGATGTGATATGGGAAACGCTTCCTCACTTCTGGATTTCTATATCCATGGTCGTCCTTCTTGCTGCCACAGTATTCACTCTTTTAAAGATAAATGGTGATATTTCTGCTCTAGGCTGGTGGGACTTATTCATAAACTTTGGAATTGCACAGGGTTTTGCCTTTCTTGTTTGCACGAAGTGGTATAATCCAGCTATTCACAGACACGCTCACATTCAAGAACCTTGTTCATCTTCCATGAATGTAAAATACGTTGACTGGAATAGTGGCTTAGTTGTTTCTTCAGATGACGATCAAGACGAGACTGTAGTATGCAGCCTGCAGGATATCGGTGGGCATATTATGAAAATTCCTCTAATCATTTTCCAGATCCTACTCTTTATGCACTTAGAGGGGAGGCCATCGGCTGCTAGGCATATCCCAGTTCCAGTTCTTTTTGCTCCTCTTCTTTTAGTGCAAGGAACCGGTCTTTTGTTTTCTGCATATAGATTAACAGAGAAAATTGTTCTTTTAGTACATGATGGAGTTTTTTCTGTAAGATACTTGGACATAGCATCAAAAGTTCGCGAGTATTTTGGGTTCTATCGCCATGGTTCAAGGTTAGTGGGCTGGTGGTCGATTGACGAAAGAAGTCGAGAGGAACAGGCTAGACTGTATTGTGCAGAGGCTTCAGGGTATAACACTTTTTCACCTGATATAGTGAAGAAGTTGCCTAGATCGGACCTTGTTGAGGAGATTTGGAAACTGCAAGCTGCACTCAGTGAGCAAACAGAAATCACGAAATTTAGCCAGCAGGAGTATGAAAGACTTCAGAATGAAAAGATCCTATGTAGAGTATGCTTTGAAGAACAGATTAATATGGTCCTGCTTCCATGCAGGCATCATGTTCTGTGCAGCACTTGCTGTGAGAAGTGTAAAAAGTGCCCCATATGTCGTGTCTGCATTGAACAGCGAGTGCCGATATCTCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

467

Amino Acids

53.55

Weight (kDa)

8.11

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68820 AT1G68820 AT1G68820 AT1G68820
fragaria_vesca	FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120 FvH4_4g28120
malus_domestica	MD13G1047000.v1.1 MD16G1048600.v1.1
prunus_persica	Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1 Prupe.1G305000_v2.0.a1
pyrus_communis	pycom13g04110 pycom16g04250
rosa_chinensis	RchiOBHm_Chr4g0435891
rosa_laevigata	RLG00000006552
rosa_multiflora	Rmu_sc0003165.1_g000009
rosa_roxburghii	Rroxscaffold_5G00377060
rosa_rugosa	Rorug04G0290300 Rorug04G0290400 Rorug04G0290500 Rorug04G0290600
rosa_samantha	Rh4AG344800 Rh4BG353600 Rh4CG368000 Rh4DG347400
rosa_wichuraiana	Rw4G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	232
AccII	CGCG	1 cut(s)	993
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	3 cut(s)	146, 790, 1243
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	774, 1208
AcuI	CTGAAG	4 cut(s)	284, 693, 1080, 1220
AdeI	CACNNNGTG	2 cut(s)	606, 1187
AfaI	GTAC	1 cut(s)	942
AfiI	CCNNNNNNNGG	2 cut(s)	156, 1156
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	7 cut(s)	278, 325, 356, 644, 1023, 1271, 1373
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	4 cut(s)	211, 321, 620, 1178
AluI	AGCT	4 cut(s)	211, 321, 620, 1178
Alw26I	GTCTC	2 cut(s)	402, 722
AlwI	GGATC	3 cut(s)	146, 790, 1243
AoxI	GGCC	2 cut(s)	39, 824
ApeKI	GCWGC	5 cut(s)	491, 741, 833, 1178, 1320
ApoI	RAATTY	2 cut(s)	774, 1208
AseI	ATTAAT	1 cut(s)	1281
AsiGI	ACCGGT	1 cut(s)	890
Asp700I	GAANNNNTTC	2 cut(s)	447, 1233
AspS9I	GGNCC	2 cut(s)	1147, 1288
AsuHPI	GGTGA	2 cut(s)	536, 1107
AvaII	GGWCC	2 cut(s)	1147, 1288
BaeGI	GKGCMC	2 cut(s)	235, 1352
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	180
BbvI	GCAGC	5 cut(s)	478, 753, 820, 1165, 1332
BccI	CCATC	2 cut(s)	835, 941
BcgI	CGANNNNNNTGC	4 cut(s)	244, 278, 401, 435
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	2 cut(s)	402, 722
BfaI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140
BfmI	CTRYAG	2 cut(s)	732, 746
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	5 cut(s)	492, 742, 834, 1179, 1321
BlsI	GCNGC	5 cut(s)	493, 743, 835, 1180, 1322
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	2 cut(s)	1147, 1288
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	1147, 1288
BmiI	GGNNCC	2 cut(s)	234, 889
BmrFI	CCNGG	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	989, 1315
BmuI	ACTGGG	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	717
BsaJI	CCNNGG	2 cut(s)	474, 1015
BsaWI	WCCGGW	1 cut(s)	890
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 1156
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	3 cut(s)	689, 848, 854
Bse3DI	GCAATG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	474, 1015
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	2 cut(s)	156, 1156
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	1198
BseNI	ACTGG	3 cut(s)	689, 848, 854
BseRI	GAGGAG	4 cut(s)	28, 86, 858, 1172
BseSI	GKGCMC	2 cut(s)	235, 1352
BseXI	GCAGC	5 cut(s)	478, 753, 820, 1165, 1332
BsgI	GTGCAG	3 cut(s)	1107, 1164, 1339
Bsh1236I	CGCG	1 cut(s)	993
BshFI	GGCC	2 cut(s)	41, 826
BshNI	GGYRCC	1 cut(s)	232
BshTI	ACCGGT	1 cut(s)	890
BsiSI	CCGG	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	156, 1156
BsmAI	GTCTC	2 cut(s)	402, 722
BsmBI	CGTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	41, 826
Bsp1286I	GDGCHC	2 cut(s)	235, 1352
Bsp143I	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
Bsp19I	CCATGG	2 cut(s)	474, 1015
Bsp68I	TCGCGA	1 cut(s)	993
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	41, 826
BspCNI	CTCAG	1 cut(s)	1197
BspFNI	CGCG	1 cut(s)	993
BspLI	GGNNCC	2 cut(s)	234, 889
BspMAI	CTGCAG	1 cut(s)	750
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	3 cut(s)	146, 790, 1243
BspT107I	GGYRCC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	3 cut(s)	689, 848, 854
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	2 cut(s)	474, 1015
BssMI	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	474, 1015
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	116, 499, 733, 1080
Bst6I	CTCTTC	1 cut(s)	876
BstAPI	GCANNNNNTGC	1 cut(s)	1326
BstC8I	GCNNGC	4 cut(s)	746, 1176, 1217, 1304
BstDEI	CTNAG	3 cut(s)	697, 814, 1184
BstDSI	CCRYGG	2 cut(s)	474, 1015
BstENI	CCTNNNNNAGG	1 cut(s)	1154
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	993
BstKTI	GATC	7 cut(s)	35, 141, 223, 721, 798, 1145, 1251
BstMAI	GTCTC	2 cut(s)	402, 722
BstMBI	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 1326
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	2 cut(s)	732, 746
BstSLI	GKGCMC	2 cut(s)	235, 1352
BstUI	CGCG	1 cut(s)	993
BstV1I	GCAGC	5 cut(s)	478, 753, 820, 1165, 1332
BstX2I	RGATCY	2 cut(s)	795, 1248
BstYI	RGATCY	2 cut(s)	795, 1248
BsuRI	GGCC	2 cut(s)	41, 826
BtgI	CCRYGG	2 cut(s)	474, 1015
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	1192
BtuMI	TCGCGA	1 cut(s)	993
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	4 cut(s)	746, 1176, 1217, 1304
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	2 cut(s)	1147, 1288
Csp6I	GTAC	1 cut(s)	941
CspAI	ACCGGT	1 cut(s)	890
CspCI	CAANNNNNGTGG	2 cut(s)	1011, 1046
CviQI	GTAC	1 cut(s)	941
DdeI	CTNAG	3 cut(s)	697, 814, 1184
DpnI	GATC	7 cut(s)	34, 140, 222, 720, 797, 1144, 1250
DpnII	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
DraI	TTTAAA	1 cut(s)	513
DraIII	CACNNNGTG	2 cut(s)	606, 1187
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
Eco130I	CCWWGG	2 cut(s)	474, 1015
Eco32I	GATATC	2 cut(s)	754, 1389
Eco47I	GGWCC	2 cut(s)	1147, 1288
Eco57I	CTGAAG	4 cut(s)	284, 693, 1080, 1220
EcoNI	CCTNNNNNAGG	1 cut(s)	1154
EcoRII	CCWGG	1 cut(s)	403
EcoRV	GATATC	2 cut(s)	754, 1389
EcoT14I	CCWWGG	2 cut(s)	474, 1015
ErhI	CCWWGG	2 cut(s)	474, 1015
Esp3I	CGTCTC	1 cut(s)	402
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	563
FauNDI	CATATG	1 cut(s)	1355
Fnu4HI	GCNGC	5 cut(s)	492, 742, 834, 1179, 1321
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	5 cut(s)	492, 742, 834, 1179, 1321
FspBI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140
GluI	GCNGC	5 cut(s)	492, 742, 834, 1179, 1321
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	41, 826
HapII	CCGG	1 cut(s)	891
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	2 cut(s)	536, 1107
Hpy166II	GTNNAC	2 cut(s)	87, 682
Hpy188I	TCNGA	5 cut(s)	12, 303, 712, 1147, 1239
Hpy188III	TCNNGA	9 cut(s)	88, 382, 460, 644, 722, 793, 992, 1061, 1204
Hpy8I	GTNNAC	2 cut(s)	87, 682
HpyAV	CCTTC	2 cut(s)	308, 494
HpyCH4III	ACNGT	4 cut(s)	116, 499, 733, 1080
HpyCH4IV	ACGT	3 cut(s)	26, 83, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 1326
HpyF3I	CTNAG	3 cut(s)	697, 814, 1184
HpySE526I	ACGT	3 cut(s)	26, 83, 678
Kzo9I	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
LmnI	GCTCC	3 cut(s)	208, 216, 871
Lsp1109I	GCAGC	5 cut(s)	478, 753, 820, 1165, 1332
LweI	GCATC	2 cut(s)	989, 1315
MaeI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140
MaeII	ACGT	3 cut(s)	26, 83, 678
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	7 cut(s)	34, 140, 222, 720, 797, 1144, 1250
MboI	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
MboII	GAAGA	6 cut(s)	337, 651, 699, 863, 1141, 1283
MfeI	CAATTG	1 cut(s)	226
MflI	RGATCY	2 cut(s)	795, 1248
MhlI	GDGCHC	2 cut(s)	235, 1352
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	6 cut(s)	226, 363, 570, 774, 927, 1208
MluNI	TGGCCA	1 cut(s)	41
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	447, 1233
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	3 cut(s)	512, 917, 1281
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	41
MspI	CCGG	1 cut(s)	891
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	993
MwoI	GCNNNNNNNGC	2 cut(s)	251, 1326
NcoI	CCATGG	2 cut(s)	474, 1015
NdeI	CATATG	1 cut(s)	1355
NdeII	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
NlaIV	GGNNCC	2 cut(s)	234, 889
NruI	TCGCGA	1 cut(s)	993
NspI	RCATGY	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PdmI	GAANNNNTTC	2 cut(s)	447, 1233
PfeI	GAWTC	1 cut(s)	91
PinAI	ACCGGT	1 cut(s)	890
PkrI	GCNGC	5 cut(s)	493, 743, 835, 1180, 1322
PshBI	ATTAAT	1 cut(s)	1281
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	234, 889
PspPI	GGNCC	2 cut(s)	1147, 1288
PsrI	GAACNNNNNNTAC	2 cut(s)	989, 1021
PstI	CTGCAG	1 cut(s)	750
PsuI	RGATCY	2 cut(s)	795, 1248
RruI	TCGCGA	1 cut(s)	993
RsaI	GTAC	1 cut(s)	942
RsaNI	GTAC	1 cut(s)	941
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	512, 917, 1281
SatI	GCNGC	5 cut(s)	492, 742, 834, 1179, 1321
Sau3AI	GATC	7 cut(s)	32, 138, 220, 718, 795, 1142, 1248
Sau96I	GGNCC	2 cut(s)	1147, 1288
SbfI	CCTGCAGG	1 cut(s)	750
ScrFI	CCNGG	1 cut(s)	405
SdaI	CCTGCAGG	1 cut(s)	750
SduI	GDGCHC	2 cut(s)	235, 1352
SfaNI	GCATC	2 cut(s)	989, 1315
SfcI	CTRYAG	2 cut(s)	732, 746
SinI	GGWCC	2 cut(s)	1147, 1288
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse8387I	CCTGCAGG	1 cut(s)	750
Sse9I	AATT	6 cut(s)	226, 363, 570, 774, 927, 1208
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	2 cut(s)	474, 1015
TaaI	ACNGT	4 cut(s)	116, 499, 733, 1080
TaiI	ACGT	3 cut(s)	29, 86, 681
TaqI	TCGA	2 cut(s)	1043, 1060
TasI	AATT	6 cut(s)	226, 363, 570, 774, 927, 1208
TatI	WGTACW	1 cut(s)	940
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	512, 917, 1281
Tru9I	TTAA	3 cut(s)	512, 917, 1281
TscAI	CASTG	1 cut(s)	1192
TseI	GCWGC	5 cut(s)	491, 741, 833, 1178, 1320
TspDTI	ATGAA	8 cut(s)	230, 429, 547, 645, 680, 785, 1242, 1257
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	1192
VpaK11BI	GGWCC	2 cut(s)	1147, 1288
VspI	ATTAAT	1 cut(s)	1281
XagI	CCTNNNNNAGG	1 cut(s)	1154
XapI	RAATTY	2 cut(s)	774, 1208
XceI	RCATGY	1 cut(s)	422
XmnI	GAANNNNTTC	2 cut(s)	447, 1233
XspI	CTAG	5 cut(s)	359, 539, 837, 1074, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.