Rorug04G0290300

Transmembrane Fragile-X-F protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004923
Physical Location & Seq
Reverse (-)
46471764 .. 46472288
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0290300.1

Sequence Viewer

Length: 525 bp
ATGAACTACTCAATCCAAACCCCCCTTCTTCTTCTTCTTCTTCATATTGTTTTCTTCAATGTGCAAACCCAATCCCAAAGCACTGATCTAATATCCAAAACATGCAAGAAAACACCCCACTTTGACCTTTGTCTCTCGTCTCTCCAATCAAGCCCTCAGAGCTCAAACTCAGACATTTCAGGCTTGGCTCACATAATGGCTGATCTTGTTCTGGCCAATGCAACTGATACACTGGATTACATCCATGGCCTACTCAAGCAATCCCCAGAAGAAGATTTGCAGAAGCCTTTGGCAAACTGTGCAGAGTTGTACATTCCAGTGGTGAAGTACACTCTCCCACAGTCAATTGATGCTCTCAGTAATGGTCATTATGGGTTTGCCAACTACGGCATTTCTGATGCCGCAAAGGAAGCTGAGGCTTGTGAGAAGGGGTTTTCCGGGGAGTCGCCGTTGACAGATAGGAACACTCTTGTGAGCAGCCTCGCTGAAGTAGCTGTGGCTATCATCAAGTTGGTGCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_185A zf-C3HC4_3

Protein Analysis

174

Amino Acids

18.8

Weight (kDa)

4.9

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 29 - 168 3.4e-25 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 402
AcoI YGGCCR 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 2 cut(s) 311, 329
AgsI TTSAA 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 3 cut(s) 162, 413, 494
AluI AGCT 3 cut(s) 162, 413, 494
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 2 cut(s) 137, 144
AoxI GGCC 2 cut(s) 213, 247
ApeKI GCWGC 1 cut(s) 477
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 334
BalI TGGCCA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 164
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 489
BceAI ACGGC 2 cut(s) 403, 433
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 137, 144
BisI GCNGC 2 cut(s) 402, 478
BlsI GCNGC 2 cut(s) 403, 479
Bme1390I CCNGG 1 cut(s) 439
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 340, 388
BoxI GACNNNNGTC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 2 cut(s) 244, 438
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bse1I ACTGG 2 cut(s) 237, 317
BseDI CCNNGG 2 cut(s) 244, 438
BseGI GGATG 1 cut(s) 240
BseMII CTCAG 4 cut(s) 170, 183, 370, 405
BseNI ACTGG 2 cut(s) 237, 317
BseXI GCAGC 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 2 cut(s) 215, 249
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 438
BsmAI GTCTC 2 cut(s) 137, 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 2 cut(s) 215, 249
Bsp1286I GDGCHC 1 cut(s) 164
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 2 cut(s) 85, 202
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 402
BspANI GGCC 2 cut(s) 215, 249
BspCNI CTCAG 4 cut(s) 169, 182, 369, 406
BsrGI TGTACA 1 cut(s) 309
BsrI ACTGG 2 cut(s) 237, 317
BssECI CCNNGG 2 cut(s) 244, 438
BssMI GATC 2 cut(s) 85, 202
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 299, 342
BstAPI GCANNNNNTGC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 309
BstDEI CTNAG 4 cut(s) 156, 169, 356, 414
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 2 cut(s) 88, 205
BstMAI GTCTC 2 cut(s) 137, 144
BstMBI GATC 2 cut(s) 85, 202
BstMWI GCNNNNNNNGC 4 cut(s) 159, 299, 410, 491
BstNSI RCATGY 1 cut(s) 105
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 215, 249
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 3 cut(s) 81, 230, 324
Csp6I GTAC 2 cut(s) 310, 328
CviAII CATG 2 cut(s) 102, 245
CviQI GTAC 2 cut(s) 310, 328
DdeI CTNAG 4 cut(s) 156, 169, 356, 414
DpnI GATC 2 cut(s) 87, 204
DpnII GATC 2 cut(s) 85, 202
EaeI YGGCCR 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 105, 248
FaiI YATR 5 cut(s) 45, 103, 194, 246, 372
FatI CATG 2 cut(s) 101, 244
Fnu4HI GCNGC 2 cut(s) 402, 478
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 402, 478
GluI GCNGC 2 cut(s) 402, 478
HaeIII GGCC 2 cut(s) 215, 249
HapII CCGG 1 cut(s) 438
Hin1II CATG 2 cut(s) 105, 248
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 1 cut(s) 443
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 330, 453
Hpy188I TCNGA 3 cut(s) 159, 172, 397
Hpy8I GTNNAC 2 cut(s) 330, 453
HpyAV CCTTC 2 cut(s) 35, 421
HpyCH4III ACNGT 2 cut(s) 299, 342
HpyCH4V TGCA 6 cut(s) 64, 105, 221, 280, 302, 517
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 299, 410, 491
HpyF3I CTNAG 4 cut(s) 156, 169, 356, 414
Hsp92II CATG 2 cut(s) 105, 248
Kzo9I GATC 2 cut(s) 85, 202
LpnPI CCDG 7 cut(s) 165, 197, 218, 279, 330, 451, 503
Lsp1109I GCAGC 1 cut(s) 489
LweI GCATC 2 cut(s) 340, 388
MalI GATC 2 cut(s) 87, 204
MboI GATC 2 cut(s) 85, 202
MboII GAAGA 8 cut(s) 20, 23, 26, 29, 32, 46, 281, 284
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 164
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 1 cut(s) 345
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 3 cut(s) 165, 409, 491
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MslI CAYNNNNRTG 2 cut(s) 317, 470
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 345
MwoI GCNNNNNNNGC 4 cut(s) 159, 299, 410, 491
NciI CCSGG 1 cut(s) 439
NcoI CCATGG 1 cut(s) 244
NdeII GATC 2 cut(s) 85, 202
NlaIII CATG 2 cut(s) 105, 248
NspI RCATGY 1 cut(s) 105
OliI CACNNNNGTG 1 cut(s) 470
PkrI GCNGC 2 cut(s) 403, 479
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 164
RsaI GTAC 2 cut(s) 311, 329
RsaNI GTAC 2 cut(s) 310, 328
RseI CAYNNNNRTG 2 cut(s) 317, 470
SacI GAGCTC 1 cut(s) 164
SatI GCNGC 2 cut(s) 402, 478
Sau3AI GATC 2 cut(s) 85, 202
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 164
SetI ASST 4 cut(s) 129, 164, 415, 496
SfaNI GCATC 2 cut(s) 340, 388
SmiMI CAYNNNNRTG 2 cut(s) 317, 470
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 345
SsiI CCGC 1 cut(s) 402
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 299, 342
TasI AATT 1 cut(s) 345
TatI WGTACW 2 cut(s) 309, 327
TauI GCSGC 1 cut(s) 404
TscAI CASTG 3 cut(s) 88, 237, 324
TseI GCWGC 1 cut(s) 477
TspDTI ATGAA 2 cut(s) 17, 32
TspRI CASTG 3 cut(s) 88, 237, 324
XceI RCATGY 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.