Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007376

Physical Location & Seq

Genomic Coordinates Reverse (-)

3552518 .. 3553963

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1050100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTGTATAGCTAAATGCTTTCTTCTGGATATTTACACTGATGTGTGTATCAGAGTGGAAGAATTACGGGATTCAACTGCCCATGCAGAAATGATATGCATACGGGAAGCTTCAAATGTTCTTCGGTCATGGAGGCTTTCGGAGACTACTCTGTATGTAACACTTGAACCGTGCCCAATGTGTGCTGGAGCAATACTCCAAGCAAGAGTCGACACTGTTGTATGGCGAGCTCCAAATAAGCTTCTCGGAGCTGATGGCAGCTGGATAAGGTATGCGAGTTGTGCCCTTCTAAGTAACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002097 GO:0002100 GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006382 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016553 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MafB19-deam dCMP_cyt_deam_1

Protein Analysis

101

Amino Acids

11.19

Weight (kDa)

5.73

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MafB19-deam	PF14437	13 - 77	2.1e-17	MafB19-like deaminase
dCMP_cyt_deam_1	PF00383	21 - 75	1.2e-16	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68720
fragaria_vesca	FvH4_4g28440 FvH4_4g28440 FvH4_4g28440
malus_domestica	MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1
prunus_persica	Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1
pyrus_communis	pycom13g04440 pycom16g04480
rosa_chinensis	RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401
rosa_laevigata	RLG00000006522
rosa_multiflora	Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377560
rosa_rugosa	Rorug04G0293500
rosa_samantha	Rh4AG347800 Rh4BG356600 Rh4CG371200
rosa_wichuraiana	Rw4G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	75, 114, 167
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	6 cut(s)	11, 110, 230, 241, 251, 261
AluI	AGCT	6 cut(s)	11, 110, 230, 241, 251, 261
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	258
BaeGI	GKGCMC	2 cut(s)	176, 286
BanII	GRGCYC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BpmI	CTGGAG	1 cut(s)	207
BseSI	GKGCMC	2 cut(s)	176, 286
BseXI	GCAGC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	176, 232, 286
Bst4CI	ACNGT	2 cut(s)	171, 217
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	290
BstMAI	GTCTC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSLI	GKGCMC	2 cut(s)	176, 286
BstV1I	GCAGC	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	36, 213
Cac8I	GCNNGC	1 cut(s)	228
CviAII	CATG	2 cut(s)	83, 129
CviJI	RGCY	7 cut(s)	11, 110, 136, 230, 241, 251, 261
CviKI_1	RGCY	7 cut(s)	11, 110, 136, 230, 241, 251, 261
DdeI	CTNAG	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	2 cut(s)	86, 132
FaiI	YATR	8 cut(s)	8, 84, 97, 101, 130, 156, 223, 273
FatI	CATG	2 cut(s)	82, 128
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	207
Hin1II	CATG	2 cut(s)	86, 132
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	2 cut(s)	108, 239
HinfI	GANTC	2 cut(s)	71, 207
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	53, 142, 248
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	171, 217
HpyCH4V	TGCA	2 cut(s)	86, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	86, 132
LmnI	GCTCC	3 cut(s)	188, 235, 248
LpnPI	CCDG	3 cut(s)	11, 171, 247
Lsp1109I	GCAGC	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	157, 293
MboII	GAAGA	3 cut(s)	14, 71, 113
MhlI	GDGCHC	3 cut(s)	176, 232, 286
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	86, 132
NsiI	ATGCAT	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	232
SalI	GTCGAC	1 cut(s)	209
SatI	GCNGC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	3 cut(s)	176, 232, 286
SetI	ASST	7 cut(s)	13, 112, 232, 243, 253, 263, 272
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	171, 217
TaqI	TCGA	1 cut(s)	210
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	2 cut(s)	43, 220
TseI	GCWGC	1 cut(s)	258
TspRI	CASTG	2 cut(s)	43, 220
XmiI	GTMKAC	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.