tRNA(Adenine(34)) deaminase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68720 |
| fragaria_vesca | FvH4_4g28440 FvH4_4g28440 FvH4_4g28440 |
| malus_domestica | MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1 |
| prunus_persica | Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 |
| pyrus_communis | pycom13g04440 pycom16g04480 |
| rosa_chinensis | RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401 |
| rosa_laevigata | RLG00000006522 |
| rosa_multiflora | Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00377560 |
| rosa_rugosa | Rorug04G0293500 |
| rosa_samantha | Rh4AG347800 Rh4BG356600 Rh4CG371200 |
| rosa_wichuraiana | Rw4G030410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3380 |
| Acc16I | TGCGCA | 1 cut(s) | 4192 |
| Acc36I | ACCTGC | 1 cut(s) | 3030 |
| AccB1I | GGYRCC | 2 cut(s) | 2203, 2761 |
| AccI | GTMKAC | 3 cut(s) | 3374, 3950, 4014 |
| AccII | CGCG | 2 cut(s) | 2738, 4083 |
| AccIII | TCCGGA | 2 cut(s) | 1022, 2095 |
| AciI | CCGC | 9 cut(s) | 297, 367, 1534, 1729, 2219, 2577, 2738, 3944, 4265 |
| AclI | AACGTT | 1 cut(s) | 3921 |
| AclWI | GGATC | 1 cut(s) | 2251 |
| AcoI | YGGCCR | 2 cut(s) | 1627, 3175 |
| AcsI | RAATTY | 6 cut(s) | 1185, 1393, 1475, 2608, 3439, 3743 |
| AcuI | CTGAAG | 8 cut(s) | 2286, 2412, 2649, 2745, 2769, 2832, 2846, 2862 |
| AcvI | CACGTG | 1 cut(s) | 3845 |
| AcyI | GRCGYC | 1 cut(s) | 3377 |
| AdeI | CACNNNGTG | 1 cut(s) | 338 |
| AfaI | GTAC | 5 cut(s) | 857, 1148, 1593, 2010, 3816 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 289, 308, 1072, 1576, 1722 |
| AflIII | ACRYGT | 1 cut(s) | 1045 |
| AgeI | ACCGGT | 1 cut(s) | 270 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3417 |
| AhlI | ACTAGT | 1 cut(s) | 2954 |
| AjnI | CCWGG | 3 cut(s) | 1078, 2764, 3164 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3276, 3308 |
| Alw21I | GWGCWC | 2 cut(s) | 462, 4036 |
| AlwI | GGATC | 1 cut(s) | 2251 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3539 |
| Ama87I | CYCGRG | 1 cut(s) | 2107 |
| Aor13HI | TCCGGA | 2 cut(s) | 1022, 2095 |
| ApeKI | GCWGC | 7 cut(s) | 1726, 1880, 1985, 3782, 4127, 4204, 4315 |
| ApoI | RAATTY | 6 cut(s) | 1185, 1393, 1475, 2608, 3439, 3743 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 39, 71, 2548, 2580 |
| AseI | ATTAAT | 1 cut(s) | 2622 |
| AsiGI | ACCGGT | 1 cut(s) | 270 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3562 |
| AspLEI | GCGC | 3 cut(s) | 2738, 4132, 4193 |
| AsuC2I | CCSGG | 4 cut(s) | 284, 303, 309, 1754 |
| AsuHPI | GGTGA | 5 cut(s) | 2549, 2783, 3137, 3416, 4280 |
| AsuII | TTCGAA | 1 cut(s) | 1190 |
| AvaI | CYCGRG | 1 cut(s) | 2107 |
| AvaII | GGWCC | 7 cut(s) | 268, 299, 305, 1536, 1713, 3042, 3580 |
| AxyI | CCTNAGG | 1 cut(s) | 2925 |
| BaeGI | GKGCMC | 1 cut(s) | 180 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2067, 2100 |
| BalI | TGGCCA | 1 cut(s) | 1629 |
| BanI | GGYRCC | 2 cut(s) | 2203, 2761 |
| BanII | GRGCYC | 2 cut(s) | 992, 4036 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3331, 3363 |
| BauI | CACGAG | 1 cut(s) | 4275 |
| BbrPI | CACGTG | 1 cut(s) | 3845 |
| BbsI | GAAGAC | 4 cut(s) | 1011, 1334, 2820, 3390 |
| Bbv12I | GWGCWC | 2 cut(s) | 462, 4036 |
| BbvCI | CCTCAGC | 1 cut(s) | 3077 |
| BbvI | GCAGC | 7 cut(s) | 1738, 1867, 1972, 3769, 4114, 4216, 4302 |
| BceAI | ACGGC | 3 cut(s) | 307, 3005, 3162 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 769, 803, 4251, 4285 |
| BciT130I | CCWGG | 3 cut(s) | 1080, 2766, 3166 |
| BclI | TGATCA | 1 cut(s) | 3247 |
| BcnI | CCSGG | 4 cut(s) | 284, 303, 309, 1754 |
| BcuI | ACTAGT | 1 cut(s) | 2954 |
| BfmI | CTRYAG | 2 cut(s) | 1206, 2976 |
| BfuAI | ACCTGC | 1 cut(s) | 3030 |
| BisI | GCNGC | 8 cut(s) | 1727, 1730, 1881, 1986, 3783, 4128, 4205, 4316 |
| BlpI | GCTNAGC | 1 cut(s) | 461 |
| BlsI | GCNGC | 8 cut(s) | 1728, 1731, 1882, 1987, 3784, 4129, 4206, 4317 |
| Bme1390I | CCNGG | 7 cut(s) | 284, 303, 309, 1080, 1754, 2766, 3166 |
| Bme18I | GGWCC | 7 cut(s) | 268, 299, 305, 1536, 1713, 3042, 3580 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3417 |
| BmeT110I | CYCGRG | 1 cut(s) | 2107 |
| BmrFI | CCNGG | 7 cut(s) | 284, 303, 309, 1080, 1754, 2766, 3166 |
| BmsI | GCATC | 9 cut(s) | 1156, 1298, 1507, 1867, 2141, 2386, 2623, 2915, 4190 |
| BpiI | GAAGAC | 4 cut(s) | 1011, 1334, 2820, 3390 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3227, 3259 |
| BpmI | CTGGAG | 8 cut(s) | 554, 976, 2313, 2346, 2535, 2787, 2874, 4011 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3077 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 461 |
| Bpu14I | TTCGAA | 1 cut(s) | 1190 |
| BpuEI | CTTGAG | 2 cut(s) | 1660, 2583 |
| BpuMI | CCSGG | 4 cut(s) | 284, 303, 309, 1754 |
| BsaAI | YACGTR | 1 cut(s) | 3845 |
| BsaBI | GATNNNNATC | 1 cut(s) | 892 |
| BsaHI | GRCGYC | 1 cut(s) | 3377 |
| BsaI | GGTCTC | 2 cut(s) | 3092, 3230 |
| BsaJI | CCNNGG | 4 cut(s) | 1170, 3445, 4093, 4295 |
| BsaWI | WCCGGW | 3 cut(s) | 270, 1022, 2095 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 289, 308, 1072, 1576, 1722 |
| Bse118I | RCCGGY | 2 cut(s) | 270, 3035 |
| Bse1I | ACTGG | 5 cut(s) | 993, 1630, 2836, 3822, 4133 |
| Bse21I | CCTNAGG | 1 cut(s) | 2925 |
| Bse3DI | GCAATG | 2 cut(s) | 1529, 1811 |
| Bse8I | GATNNNNATC | 1 cut(s) | 892 |
| BseAI | TCCGGA | 2 cut(s) | 1022, 2095 |
| BseBI | CCWGG | 3 cut(s) | 1080, 2766, 3166 |
| BseDI | CCNNGG | 4 cut(s) | 1170, 3445, 4093, 4295 |
| BseGI | GGATG | 9 cut(s) | 406, 439, 1662, 1762, 2179, 2570, 2906, 3745, 4161 |
| BseJI | GATNNNNATC | 1 cut(s) | 892 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 289, 308, 1072, 1576, 1722 |
| BseMI | GCAATG | 2 cut(s) | 1529, 1811 |
| BseNI | ACTGG | 5 cut(s) | 993, 1630, 2836, 3822, 4133 |
| BseSI | GKGCMC | 1 cut(s) | 180 |
| BseXI | GCAGC | 7 cut(s) | 1738, 1867, 1972, 3769, 4114, 4216, 4302 |
| BsgI | GTGCAG | 1 cut(s) | 3654 |
| Bsh1236I | CGCG | 2 cut(s) | 2738, 4083 |
| BshNI | GGYRCC | 2 cut(s) | 2203, 2761 |
| BshTI | ACCGGT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 462, 4036 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2107 |
| BsiSI | CCGG | 8 cut(s) | 271, 283, 302, 308, 1023, 1753, 2096, 3036 |
| BslFI | GGGAC | 5 cut(s) | 281, 960, 1522, 1807, 3593 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 289, 308, 1072, 1576, 1722 |
| BsmBI | CGTCTC | 1 cut(s) | 935 |
| BsmFI | GGGAC | 5 cut(s) | 281, 960, 1522, 1807, 3593 |
| BsmI | GAATGC | 6 cut(s) | 299, 1312, 2166, 2845, 3022, 3462 |
| Bso31I | GGTCTC | 2 cut(s) | 3092, 3230 |
| BsoBI | CYCGRG | 1 cut(s) | 2107 |
| Bsp119I | TTCGAA | 1 cut(s) | 1190 |
| Bsp1286I | GDGCHC | 4 cut(s) | 180, 462, 992, 4036 |
| Bsp13I | TCCGGA | 2 cut(s) | 1022, 2095 |
| Bsp143I | GATC | 4 cut(s) | 252, 1831, 2243, 3247 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 461 |
| Bsp68I | TCGCGA | 1 cut(s) | 4083 |
| BspACI | CCGC | 9 cut(s) | 297, 367, 1534, 1729, 2219, 2577, 2738, 3944, 4265 |
| BspEI | TCCGGA | 2 cut(s) | 1022, 2095 |
| BspFNI | CGCG | 2 cut(s) | 2738, 4083 |
| BspMAI | CTGCAG | 1 cut(s) | 1210 |
| BspMI | ACCTGC | 1 cut(s) | 3030 |
| BspPI | GGATC | 1 cut(s) | 2251 |
| BspQI | GCTCTTC | 1 cut(s) | 1794 |
| BspT104I | TTCGAA | 1 cut(s) | 1190 |
| BspT107I | GGYRCC | 2 cut(s) | 2203, 2761 |
| BspTNI | GGTCTC | 2 cut(s) | 3092, 3230 |
| BsrDI | GCAATG | 2 cut(s) | 1529, 1811 |
| BsrFI | RCCGGY | 2 cut(s) | 270, 3035 |
| BsrI | ACTGG | 5 cut(s) | 993, 1630, 2836, 3822, 4133 |
| BssAI | RCCGGY | 2 cut(s) | 270, 3035 |
| BssECI | CCNNGG | 4 cut(s) | 1170, 3445, 4093, 4295 |
| BssMI | GATC | 4 cut(s) | 252, 1831, 2243, 3247 |
| BssNI | GRCGYC | 1 cut(s) | 3377 |
| BssSI | CACGAG | 1 cut(s) | 4275 |
| BssT1I | CCWWGG | 1 cut(s) | 4093 |
| Bst2BI | CACGAG | 1 cut(s) | 4275 |
| Bst2UI | CCWGG | 3 cut(s) | 1080, 2766, 3166 |
| Bst6I | CTCTTC | 7 cut(s) | 633, 686, 751, 933, 1137, 1794, 3603 |
| BstACI | GRCGYC | 1 cut(s) | 3377 |
| BstBAI | YACGTR | 1 cut(s) | 3845 |
| BstBI | TTCGAA | 1 cut(s) | 1190 |
| BstC8I | GCNNGC | 7 cut(s) | 467, 2251, 3227, 3942, 4125, 4248, 4252 |
| BstDSI | CCRYGG | 1 cut(s) | 4295 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1070 |
| BstF5I | GGATG | 9 cut(s) | 406, 439, 1662, 1762, 2179, 2570, 2906, 3745, 4161 |
| BstFNI | CGCG | 2 cut(s) | 2738, 4083 |
| BstHHI | GCGC | 3 cut(s) | 2738, 4132, 4193 |
| BstKTI | GATC | 4 cut(s) | 255, 1834, 2246, 3250 |
| BstMBI | GATC | 4 cut(s) | 252, 1831, 2243, 3247 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 466, 2978, 3779, 4089, 4129 |
| BstNI | CCWGG | 3 cut(s) | 1080, 2766, 3166 |
| BstNSI | RCATGY | 3 cut(s) | 1049, 1228, 3229 |
| BstSCI | CCNGG | 7 cut(s) | 282, 301, 307, 1078, 1752, 2764, 3164 |
| BstSFI | CTRYAG | 2 cut(s) | 1206, 2976 |
| BstSLI | GKGCMC | 1 cut(s) | 180 |
| BstUI | CGCG | 2 cut(s) | 2738, 4083 |
| BstV1I | GCAGC | 7 cut(s) | 1738, 1867, 1972, 3769, 4114, 4216, 4302 |
| BstV2I | GAAGAC | 4 cut(s) | 1011, 1334, 2820, 3390 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3110 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2925 |
| BtgI | CCRYGG | 1 cut(s) | 4295 |
| BtgZI | GCGATG | 1 cut(s) | 4098 |
| BtsCI | GGATG | 9 cut(s) | 406, 439, 1662, 1762, 2179, 2570, 2906, 3745, 4161 |
| BtsI | GCAGTG | 2 cut(s) | 835, 3761 |
| BtsIMutI | CAGTG | 9 cut(s) | 835, 1000, 1144, 2207, 2352, 2657, 3546, 3761, 4017 |
| BtuMI | TCGCGA | 1 cut(s) | 4083 |
| BveI | ACCTGC | 1 cut(s) | 3030 |
| Cac8I | GCNNGC | 7 cut(s) | 467, 2251, 3227, 3942, 4125, 4248, 4252 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3539 |
| CfoI | GCGC | 3 cut(s) | 2738, 4132, 4193 |
| Cfr10I | RCCGGY | 2 cut(s) | 270, 3035 |
| CpoI | CGGWCCG | 1 cut(s) | 299 |
| CseI | GACGC | 2 cut(s) | 2912, 3545 |
| CsiI | ACCWGGT | 1 cut(s) | 1078 |
| Csp6I | GTAC | 5 cut(s) | 856, 1147, 1592, 2009, 3815 |
| CspAI | ACCGGT | 1 cut(s) | 270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 343, 378 |
| CspI | CGGWCCG | 1 cut(s) | 299 |
| CviQI | GTAC | 5 cut(s) | 856, 1147, 1592, 2009, 3815 |
| DpnI | GATC | 4 cut(s) | 254, 1833, 2245, 3249 |
| DpnII | GATC | 4 cut(s) | 252, 1831, 2243, 3247 |
| DraIII | CACNNNGTG | 1 cut(s) | 338 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3417 |
| EaeI | YGGCCR | 2 cut(s) | 1627, 3175 |
| Eam1104I | CTCTTC | 7 cut(s) | 633, 686, 751, 933, 1137, 1794, 3603 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3417 |
| EarI | CTCTTC | 7 cut(s) | 633, 686, 751, 933, 1137, 1794, 3603 |
| EciI | GGCGGA | 2 cut(s) | 382, 2208 |
| Ecl136II | GAGCTC | 1 cut(s) | 4034 |
| Eco130I | CCWWGG | 1 cut(s) | 4093 |
| Eco147I | AGGCCT | 2 cut(s) | 1355, 3164 |
| Eco24I | GRGCYC | 2 cut(s) | 992, 4036 |
| Eco31I | GGTCTC | 2 cut(s) | 3092, 3230 |
| Eco32I | GATATC | 1 cut(s) | 3326 |
| Eco47I | GGWCC | 7 cut(s) | 268, 299, 305, 1536, 1713, 3042, 3580 |
| Eco53kI | GAGCTC | 1 cut(s) | 4034 |
| Eco57I | CTGAAG | 8 cut(s) | 2286, 2412, 2649, 2745, 2769, 2832, 2846, 2862 |
| Eco72I | CACGTG | 1 cut(s) | 3845 |
| Eco81I | CCTNAGG | 1 cut(s) | 2925 |
| Eco88I | CYCGRG | 1 cut(s) | 2107 |
| EcoICRI | GAGCTC | 1 cut(s) | 4034 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1070 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1713, 2873 |
| EcoRI | GAATTC | 1 cut(s) | 1393 |
| EcoRII | CCWGG | 3 cut(s) | 1078, 2764, 3164 |
| EcoRV | GATATC | 1 cut(s) | 3326 |
| EcoT14I | CCWWGG | 1 cut(s) | 4093 |
| EcoT22I | ATGCAT | 1 cut(s) | 3905 |
| EcoT38I | GRGCYC | 2 cut(s) | 992, 4036 |
| ErhI | CCWWGG | 1 cut(s) | 4093 |
| Esp3I | CGTCTC | 1 cut(s) | 935 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1680, 1712 |
| FaqI | GGGAC | 5 cut(s) | 281, 960, 1522, 1807, 3593 |
| FauNDI | CATATG | 1 cut(s) | 3047 |
| FbaI | TGATCA | 1 cut(s) | 3247 |
| FblI | GTMKAC | 3 cut(s) | 3374, 3950, 4014 |
| Fnu4HI | GCNGC | 8 cut(s) | 1727, 1730, 1881, 1986, 3783, 4128, 4205, 4316 |
| FokI | GGATG | 9 cut(s) | 413, 446, 1649, 1769, 2186, 2557, 2893, 3752, 4148 |
| FriOI | GRGCYC | 2 cut(s) | 992, 4036 |
| Fsp4HI | GCNGC | 8 cut(s) | 1727, 1730, 1881, 1986, 3783, 4128, 4205, 4316 |
| FspI | TGCGCA | 1 cut(s) | 4192 |
| GlaI | GCGC | 3 cut(s) | 2737, 4131, 4192 |
| GluI | GCNGC | 8 cut(s) | 1727, 1730, 1881, 1986, 3783, 4128, 4205, 4316 |
| GsuI | CTGGAG | 8 cut(s) | 554, 976, 2313, 2346, 2535, 2787, 2874, 4011 |
| HapII | CCGG | 8 cut(s) | 271, 283, 302, 308, 1023, 1753, 2096, 3036 |
| HgaI | GACGC | 2 cut(s) | 2912, 3545 |
| HhaI | GCGC | 3 cut(s) | 2738, 4132, 4193 |
| Hin1I | GRCGYC | 1 cut(s) | 3377 |
| Hin6I | GCGC | 3 cut(s) | 2736, 4130, 4191 |
| HinP1I | GCGC | 3 cut(s) | 2736, 4130, 4191 |
| HincII | GTYRAC | 3 cut(s) | 132, 3375, 4015 |
| HindII | GTYRAC | 3 cut(s) | 132, 3375, 4015 |
| HindIII | AAGCTT | 3 cut(s) | 1256, 3653, 4043 |
| HpaII | CCGG | 8 cut(s) | 271, 283, 302, 308, 1023, 1753, 2096, 3036 |
| HphI | GGTGA | 5 cut(s) | 2549, 2783, 3137, 3416, 4280 |
| Hpy166II | GTNNAC | 6 cut(s) | 132, 2198, 3375, 3951, 4015, 4138 |
| Hpy8I | GTNNAC | 6 cut(s) | 132, 2198, 3375, 3951, 4015, 4138 |
| Hpy99I | CGWCG | 4 cut(s) | 691, 2906, 3379, 4170 |
| HpyCH4IV | ACGT | 4 cut(s) | 128, 3377, 3844, 3921 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 466, 2978, 3779, 4089, 4129 |
| HpySE526I | ACGT | 4 cut(s) | 128, 3377, 3844, 3921 |
| Hsp92I | GRCGYC | 1 cut(s) | 3377 |
| HspAI | GCGC | 3 cut(s) | 2736, 4130, 4191 |
| Kpn2I | TCCGGA | 2 cut(s) | 1022, 2095 |
| Ksp22I | TGATCA | 1 cut(s) | 3247 |
| Kzo9I | GATC | 4 cut(s) | 252, 1831, 2243, 3247 |
| LguI | GCTCTTC | 1 cut(s) | 1794 |
| LmnI | GCTCC | 8 cut(s) | 490, 995, 2516, 3992, 4031, 4039, 4052, 4062 |
| Lsp1109I | GCAGC | 7 cut(s) | 1738, 1867, 1972, 3769, 4114, 4216, 4302 |
| LweI | GCATC | 9 cut(s) | 1156, 1298, 1507, 1867, 2141, 2386, 2623, 2915, 4190 |
| MabI | ACCWGGT | 1 cut(s) | 1078 |
| MaeII | ACGT | 4 cut(s) | 128, 3377, 3844, 3921 |
| MalI | GATC | 4 cut(s) | 254, 1833, 2245, 3249 |
| MboI | GATC | 4 cut(s) | 252, 1831, 2243, 3247 |
| MfeI | CAATTG | 1 cut(s) | 2228 |
| MhlI | GDGCHC | 4 cut(s) | 180, 462, 992, 4036 |
| MlsI | TGGCCA | 1 cut(s) | 1629 |
| MluNI | TGGCCA | 1 cut(s) | 1629 |
| MmeI | TCCRAC | 4 cut(s) | 587, 2400, 4086, 4189 |
| Mox20I | TGGCCA | 1 cut(s) | 1629 |
| Mph1103I | ATGCAT | 1 cut(s) | 3905 |
| MroI | TCCGGA | 2 cut(s) | 1022, 2095 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3562 |
| MscI | TGGCCA | 1 cut(s) | 1629 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1050, 1769, 1905, 3111, 4186 |
| Msp20I | TGGCCA | 1 cut(s) | 1629 |
| MspA1I | CMGCKG | 5 cut(s) | 1729, 2577, 2824, 4127, 4219 |
| MspI | CCGG | 8 cut(s) | 271, 283, 302, 308, 1023, 1753, 2096, 3036 |
| MspR9I | CCNGG | 7 cut(s) | 284, 303, 309, 1080, 1754, 2766, 3166 |
| MunI | CAATTG | 1 cut(s) | 2228 |
| Mva1269I | GAATGC | 6 cut(s) | 299, 1312, 2166, 2845, 3022, 3462 |
| MvaI | CCWGG | 3 cut(s) | 1080, 2766, 3166 |
| MvnI | CGCG | 2 cut(s) | 2738, 4083 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 466, 2978, 3779, 4089, 4129 |
| NciI | CCSGG | 4 cut(s) | 284, 303, 309, 1754 |
| NdeI | CATATG | 1 cut(s) | 3047 |
| NdeII | GATC | 4 cut(s) | 252, 1831, 2243, 3247 |
| NmeAIII | GCCGAG | 1 cut(s) | 1195 |
| NmuCI | GTSAC | 4 cut(s) | 914, 1362, 1553, 3480 |
| NruI | TCGCGA | 1 cut(s) | 4083 |
| NsbI | TGCGCA | 1 cut(s) | 4192 |
| NsiI | ATGCAT | 1 cut(s) | 3905 |
| NspI | RCATGY | 3 cut(s) | 1049, 1228, 3229 |
| NspV | TTCGAA | 1 cut(s) | 1190 |
| PaeI | GCATGC | 1 cut(s) | 3229 |
| PceI | AGGCCT | 2 cut(s) | 1355, 3164 |
| PciI | ACATGT | 1 cut(s) | 1045 |
| PciSI | GCTCTTC | 1 cut(s) | 1794 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 134 |
| PctI | GAATGC | 6 cut(s) | 299, 1312, 2166, 2845, 3022, 3462 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3562 |
| PflFI | GACNNNGTC | 1 cut(s) | 2566 |
| PinAI | ACCGGT | 1 cut(s) | 270 |
| PkrI | GCNGC | 8 cut(s) | 1728, 1731, 1882, 1987, 3784, 4129, 4206, 4317 |
| PmaCI | CACGTG | 1 cut(s) | 3845 |
| PmlI | CACGTG | 1 cut(s) | 3845 |
| Ppu21I | YACGTR | 1 cut(s) | 3845 |
| PpuMI | RGGWCCY | 1 cut(s) | 1713 |
| PscI | ACATGT | 1 cut(s) | 1045 |
| PshBI | ATTAAT | 1 cut(s) | 2622 |
| Psp124BI | GAGCTC | 1 cut(s) | 4036 |
| Psp1406I | AACGTT | 1 cut(s) | 3921 |
| Psp5II | RGGWCCY | 1 cut(s) | 1713 |
| Psp6I | CCWGG | 3 cut(s) | 1078, 2764, 3164 |
| PspCI | CACGTG | 1 cut(s) | 3845 |
| PspGI | CCWGG | 3 cut(s) | 1078, 2764, 3164 |
| PspPPI | RGGWCCY | 1 cut(s) | 1713 |
| PstI | CTGCAG | 1 cut(s) | 1210 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3539 |
| PsyI | GACNNNGTC | 1 cut(s) | 2566 |
| PvuII | CAGCTG | 3 cut(s) | 2824, 4127, 4219 |
| RruI | TCGCGA | 1 cut(s) | 4083 |
| RsaI | GTAC | 5 cut(s) | 857, 1148, 1593, 2010, 3816 |
| RsaNI | GTAC | 5 cut(s) | 856, 1147, 1592, 2009, 3815 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1050, 1769, 1905, 3111, 4186 |
| Rsr2I | CGGWCCG | 1 cut(s) | 299 |
| RsrII | CGGWCCG | 1 cut(s) | 299 |
| SacI | GAGCTC | 1 cut(s) | 4036 |
| SalI | GTCGAC | 2 cut(s) | 3373, 4013 |
| SapI | GCTCTTC | 1 cut(s) | 1794 |
| SatI | GCNGC | 8 cut(s) | 1727, 1730, 1881, 1986, 3783, 4128, 4205, 4316 |
| Sau3AI | GATC | 4 cut(s) | 252, 1831, 2243, 3247 |
| ScrFI | CCNGG | 7 cut(s) | 284, 303, 309, 1080, 1754, 2766, 3166 |
| SduI | GDGCHC | 4 cut(s) | 180, 462, 992, 4036 |
| SexAI | ACCWGGT | 1 cut(s) | 1078 |
| SfaNI | GCATC | 9 cut(s) | 1156, 1298, 1507, 1867, 2141, 2386, 2623, 2915, 4190 |
| SfcI | CTRYAG | 2 cut(s) | 1206, 2976 |
| SfuI | TTCGAA | 1 cut(s) | 1190 |
| SinI | GGWCC | 7 cut(s) | 268, 299, 305, 1536, 1713, 3042, 3580 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1050, 1769, 1905, 3111, 4186 |
| SmlI | CTYRAG | 2 cut(s) | 1675, 2598 |
| SmoI | CTYRAG | 2 cut(s) | 1675, 2598 |
| SpeI | ACTAGT | 1 cut(s) | 2954 |
| SphI | GCATGC | 1 cut(s) | 3229 |
| SseBI | AGGCCT | 2 cut(s) | 1355, 3164 |
| SsiI | CCGC | 9 cut(s) | 297, 367, 1534, 1729, 2219, 2577, 2738, 3944, 4265 |
| SspI | AATATT | 1 cut(s) | 1657 |
| SstI | GAGCTC | 1 cut(s) | 4036 |
| StuI | AGGCCT | 2 cut(s) | 1355, 3164 |
| StyD4I | CCNGG | 7 cut(s) | 282, 301, 307, 1078, 1752, 2764, 3164 |
| StyI | CCWWGG | 1 cut(s) | 4093 |
| TaiI | ACGT | 4 cut(s) | 131, 3380, 3847, 3924 |
| TaqII | GACCGA | 1 cut(s) | 2915 |
| TatI | WGTACW | 4 cut(s) | 1146, 1591, 2008, 3814 |
| TauI | GCSGC | 1 cut(s) | 1732 |
| TscAI | CASTG | 9 cut(s) | 835, 1000, 1144, 2214, 2359, 2657, 3553, 3768, 4024 |
| TseFI | GTSAC | 4 cut(s) | 914, 1362, 1553, 3480 |
| TseI | GCWGC | 7 cut(s) | 1726, 1880, 1985, 3782, 4127, 4204, 4315 |
| Tsp45I | GTSAC | 4 cut(s) | 914, 1362, 1553, 3480 |
| TspGWI | ACGGA | 4 cut(s) | 736, 1277, 3752, 4312 |
| TspRI | CASTG | 9 cut(s) | 835, 1000, 1144, 2214, 2359, 2657, 3553, 3768, 4024 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2566 |
| VpaK11BI | GGWCC | 7 cut(s) | 268, 299, 305, 1536, 1713, 3042, 3580 |
| VspI | ATTAAT | 1 cut(s) | 2622 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1070 |
| XapI | RAATTY | 6 cut(s) | 1185, 1393, 1475, 2608, 3439, 3743 |
| XbaI | TCTAGA | 3 cut(s) | 239, 926, 1466 |
| XceI | RCATGY | 3 cut(s) | 1049, 1228, 3229 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1058, 2510 |
| XmiI | GTMKAC | 3 cut(s) | 3374, 3950, 4014 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3562 |
| ZraI | GACGTC | 1 cut(s) | 3378 |
| Zsp2I | ATGCAT | 1 cut(s) | 3905 |