Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256611.1

Orthogroup ID

OG0007376

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 794

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256611.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 793 bp

ctgagtgaggaagtgggtgaggagcgttttggtagggagagaaatgggtttaagagagcagggctggagggtaggaggagaaatgtgggttcgtcgtctaagagagtggaagaggagagtaggaggagtttgagtggtagtcggagaaatgtgggttcgtctaagagagtagaagaggacagtaggaggagtttgagtggtggtaagagaaatgtgagttcgtcgaagagcgtagaagctgagaggaggagttttgttggtagagagaaaagtgagagttccgttaagggaagagagaaaattgagagtgtatcgaagggagtgcaagtagattttgaagaaactaatagaagtgagtgtagcagtggggagaagaaaagtaacggtaggtactcatctttggagagtaattcaaagcaccgattggaatcaactagagtcgagttaagtgaaaaagattctagacagaaagaagagacgggactgcttttaagagctgaaaatcataggggaaggaaagagggctccagtggttcatcttattactccttgtcttcaggggattttggaagtgaggcagatgtccatgataagcatggccttttggaggaaccaggttcaagtgtgcttaaggattcccactatgatagaggtagatttgatgggcgaatcagtgaagagtacaggaaccgtagagatgatgctgaggccaatagtgaaatatcgaagcagagaaatactgcagttgaggggggtggcatgtgggattggaggaagaagtcagaaaagaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002097 GO:0002100 GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006382 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016553 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MafB19-deam dCMP_cyt_deam_1

Protein Analysis

264

Amino Acids

29.75

Weight (kDa)

9.47

Isoelectric Point (pI)

75.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68720
fragaria_vesca	FvH4_4g28440 FvH4_4g28440 FvH4_4g28440
malus_domestica	MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1
prunus_persica	Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1
pyrus_communis	pycom13g04440 pycom16g04480
rosa_chinensis	RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401
rosa_laevigata	RLG00000006522
rosa_multiflora	Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377560
rosa_rugosa	Rorug04G0293500
rosa_samantha	Rh4AG347800 Rh4BG356600 Rh4CG371200
rosa_wichuraiana	Rw4G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	2 cut(s)	392, 683
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	3 cut(s)	338, 414, 621
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	2 cut(s)	239, 497
AluI	AGCT	2 cut(s)	239, 497
Alw26I	GTCTC	1 cut(s)	470
AoxI	GGCC	2 cut(s)	598, 708
AsuHPI	GGTGA	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	546
BbvCI	CCTCAGC	1 cut(s)	705
BccI	CCATC	1 cut(s)	656
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	2 cut(s)	435, 462
BfmI	CTRYAG	1 cut(s)	741
BfrI	CTTAAG	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	615
BmiI	GGNNCC	3 cut(s)	526, 612, 689
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	1 cut(s)	691
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	2 cut(s)	86, 511
Bpu10I	CCTNAGC	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	427
BsaXI	ACNNNNNCTCC	6 cut(s)	118, 148, 181, 211, 312, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	615
BseJI	GATNNNNATC	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	2 cut(s)	231, 696
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	7 cut(s)	35, 91, 128, 139, 202, 259, 262
BshFI	GGCC	2 cut(s)	600, 710
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	1 cut(s)	470
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	600, 710
Bsp1286I	GDGCHC	1 cut(s)	527
BspANI	GGCC	2 cut(s)	600, 710
BspCNI	CTCAG	2 cut(s)	232, 697
BspLI	GGNNCC	3 cut(s)	526, 612, 689
BspMAI	CTGCAG	1 cut(s)	745
BspQI	GCTCTTC	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	182, 386, 692
Bst6I	CTCTTC	6 cut(s)	105, 168, 221, 286, 468, 672
BstAFI	CTTAAG	1 cut(s)	629
BstDEI	CTNAG	5 cut(s)	2, 99, 162, 240, 705
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstMAI	GTCTC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	1 cut(s)	741
BstV2I	GAAGAC	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	600, 710
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	3 cut(s)	370, 535, 679
CsiI	ACCWGGT	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	391, 682
CviAII	CATG	3 cut(s)	587, 596, 760
CviJI	RGCY	6 cut(s)	64, 239, 497, 525, 600, 710
CviKI_1	RGCY	6 cut(s)	64, 239, 497, 525, 600, 710
CviQI	GTAC	2 cut(s)	391, 682
DdeI	CTNAG	5 cut(s)	2, 99, 162, 240, 705
Eam1104I	CTCTTC	6 cut(s)	105, 168, 221, 286, 468, 672
EarI	CTCTTC	6 cut(s)	105, 168, 221, 286, 468, 672
Eco24I	GRGCYC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	540
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	527
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	3 cut(s)	590, 599, 763
FaiI	YATR	5 cut(s)	507, 588, 597, 645, 761
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	3 cut(s)	586, 595, 759
FriOI	GRGCYC	1 cut(s)	527
FspBI	CTAG	2 cut(s)	435, 462
GsuI	CTGGAG	2 cut(s)	86, 511
HaeIII	GGCC	2 cut(s)	600, 710
Hin1II	CATG	3 cut(s)	590, 599, 763
HinfI	GANTC	5 cut(s)	428, 438, 458, 635, 669
HphI	GGTGA	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	144, 784
Hpy188III	TCNNGA	1 cut(s)	462
Hpy99I	CGWCG	2 cut(s)	97, 226
HpyAV	CCTTC	2 cut(s)	310, 507
HpyCH4III	ACNGT	3 cut(s)	182, 386, 692
HpyCH4V	TGCA	2 cut(s)	325, 743
HpyF3I	CTNAG	5 cut(s)	2, 99, 162, 240, 705
Hsp92II	CATG	3 cut(s)	590, 599, 763
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	2 cut(s)	22, 530
LpnPI	CCDG	7 cut(s)	45, 50, 541, 543, 600, 627, 670
LweI	GCATC	1 cut(s)	691
MabI	ACCWGGT	1 cut(s)	613
MaeI	CTAG	2 cut(s)	435, 462
MaeIII	GTNAC	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	2 cut(s)	300, 409
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	122
MseI	TTAA	5 cut(s)	51, 285, 446, 491, 630
MspCI	CTTAAG	1 cut(s)	629
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
NlaIII	CATG	3 cut(s)	590, 599, 763
NlaIV	GGNNCC	3 cut(s)	526, 612, 689
NspI	RCATGY	1 cut(s)	763
PciSI	GCTCTTC	1 cut(s)	221
PfeI	GAWTC	4 cut(s)	428, 458, 635, 669
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	526, 612, 689
PstI	CTGCAG	1 cut(s)	745
RsaI	GTAC	2 cut(s)	392, 683
RsaNI	GTAC	2 cut(s)	391, 682
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	5 cut(s)	51, 285, 446, 491, 630
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	527
SetI	ASST	5 cut(s)	241, 392, 499, 619, 655
SexAI	ACCWGGT	1 cut(s)	613
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	2 cut(s)	300, 409
SspMI	CTAG	2 cut(s)	435, 462
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	3 cut(s)	182, 386, 692
TaqI	TCGA	4 cut(s)	224, 314, 441, 725
TasI	AATT	2 cut(s)	300, 409
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	4 cut(s)	428, 458, 635, 669
Tru1I	TTAA	5 cut(s)	51, 285, 446, 491, 630
Tru9I	TTAA	5 cut(s)	51, 285, 446, 491, 630
TscAI	CASTG	3 cut(s)	370, 535, 679
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	3 cut(s)	370, 535, 679
Vha464I	CTTAAG	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	605
XbaI	TCTAGA	1 cut(s)	461
XceI	RCATGY	1 cut(s)	763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XspI	CTAG	2 cut(s)	435, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.