Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007376

Physical Location & Seq

Genomic Coordinates Reverse (-)

59677611 .. 59681741

Gene Structure 4131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3153 bp

ATGTGGGATTGGAGGAAGAAGTCAGAAAAGAAGCTTACAGAAGTAGTGATTGAAGAAACACAAGCATCAAGGAAATCCTCAGAAAAGCATTCAAGAGTATTGAAGACCAATGAAAGTGAGTTAGCAAAGGCCTCTGGGTCACACAAGCAGTTTAATGATGAGAGGGAGAATTCATATTTGACTTGGGGAACAAAAGAACAATATAGGCGAACAGGGAACCAAGATATTGTTGAGACTGAATCTAGAAGAAAATTTCAAGAAGGCAAAGAGAAATTAGAAGTCCATAGAACTGATGCTGAAACATCATTGCGGTCCCAAAAGAGACTTAGTGACAGGGAACAAAACCTAGCAATGGCTACAAACTTAGTACAGGAGACAAGAGATGAACATTACAAGACGACTGGCCATATCACTCAAAGGGAAGATTTGAATATTGACATCCAAAAGCTCTCAAGAGTTTCACAAGTTCAAGTTGTTGATACCGAAAGGACCTCCAATCGGCGGCGGCAGTCTGATACAAGGATTAACCAGGAAGAAAACACAAATATGGGCCTGATTTCAGTTGAGGGGACAGAAGAGCAATGCCACCAAATAAGCCATCAATTAGATCAAAAAGTTATTCAGAGAGTTCAATCCAGAAAAGGAACCAATGATGCTGCTGAAATGTCGTATGTTCATGCAAGTGATACAGCAAGAAATACCAATTCCCAAAGAACCTTTGACAAGAGAACTACCAATCAAGGAAGTATTACAGTATTGGCTGCAACATCAGTTGAGGAAACAGTACAGAGAAATAATCAAACTGATGAAAAGCTCAAGCAAGTTAAATCAAGAAAAGAGGCCCAAAGTTCAACAGAAGTATCAACTCTTCCGGAAAAATACTCGGGAGAACCTTCTAGTTTCCAAGTATCTTTGAGTATGGTTTCCCAAGCTAGAATGCAACGGGAGGATGTTGAGGGGCATAAGGGAAGTCCACAGGCACCACTGTTGCCTCCCCCTCCTCAATTGATTGCTAGAGGATCGGCACACATTGAGTTGTCGAGTGTGACTGCAACTCAGGAGGTTTCTGGAGAAACTTCAGAGAGTAATTCAGCTCTGAACTATGAGTCTTGTGGTGGAAACAGTAACACTGAGACTCCAGCAGAGATTTTATACCTCGATAATCCTGAAGATGCTTTGGGTTCAGCTCATCGGTTGGAGGAATCATCTTCACAGTTTATTGGGGAGTTCTGTGAGAAAATTAGATATGGAGTCTCAACTTCTGAAAACCAGACTGCCCAGAGAGTTTCTGGAGCAACTTTGGTGTATGGAGGTGAGAAGTATGGGCAAAAGACTTTGACTTCGTCATCCAGCGGAAATGGAACTGATGAGACTCAAGGGGAAAATTCCTACCTCATTAATCCTGAAGATGCTTTGGGTTCAGCTCAGCGTTTGGAGAAGTCATCTTCACAGTTTGTTGGGGAGTTCTCTGAGAAGGCAAGGCATGAAGCCTCAACTTCTGAAGAATATGGGGCGGAGATTTCTGAAGCAAAATGGGTGCCTGGAGGTGAGAAGCATGGTCAAATAACTTCAAGTCAATATGGGTCTGAAGACTCTCAGCTGAAGGGGAACCAGTCAAGGCGTTCATCTGGAGGTTCTGGAACCAAAGGGCCTTCAGTTGAAATGTGGGATGTGACTGACACATCCACTCTTAAAAGCCCTGAGGAAGAAAAACCAGGGGCTACTACAACTAGTGAAAAATCAGAGGCTACTACAGCAAGTGAAAAATTAGAGGCTGCTACTACAAGTGGGAATGCCGTTGCCAAGAAAACCGGCAGGTCCATATGGAATGTTGTTGCAGATATAGTTAAGCTGAGGTGGATTTCTCATGCTGAGACCCATCATTCTGGTGCAAGGTCAGGTGAAAGGATTTCATCAACTGAATCTGGAAGTAGTGAGGCCTGGTTTTCTGGCCGTGAGACTGAGGAGAACAGTGAAAAGAATGTGAAACGGGAGAAAGGCATGCAACCAGGGACCACCTCTGATCAGCTACAACCAGTGAAATCATTTTCTCAAAGTGAAAAAGTGTCTGGCCCTGTGAAATCAAAGGACAAAGTAAGATATCTTGAAACAAGTATGACATCTTCTCCAAATAAAGAGGAAAGTAGGTCGACGTCAAAATCTGTTTCCTTGTCTTCTGGTGAGGAGACTTTGAGTCCGAAAGATAATCAAAAGAATTTCCGAGGTTCTTCTTCTGGCATTCAGATTGTTGAATCGTCACAATCACAAATTGCTATTGAATCATCACAATCACAAATTGCTAGTGGCATAAAGTATCCTGTTGTGGAAGAAATTTCAGACGCTGGTTACACTGTTTCTGGAAGTGGTTCAGAGGAGAACAGGGACCAGTTTGGTTGTCAGAAGTTTGATGAAGAGTCAGACAATGTGCAAAAGGGTGCAGAATTGAAACAAAGGAAGCTTCAAAGGAATAAGCAAGTCCTGAAAGACAGATTTGATGAATGGGAAGAAGCTCAGAATCTTGAAATTGAACAGAGAAAAACAGATGAATTTTTTATGAGAGAAGCACTGCTTGAAGCGAAGAAGGCTGCTGATACTTGGGAGGTTCCTGTTGGTGCTGTACTGGTGCAACAGGGGAAGGTTATTGCACGTGGATTTAACCTAGTGGAAGAATTACGAGATTCAACAGCCCATGCTGAAATGATATGCATACGGGAGGCTTCAAACGTTCTTCGGACTTGGAGGCTTGCGGAGTCTACACTTTATGTAACACTTGAACCCTGCCCTATGTGTGCTGGAGCAATTCTTCAAGCAAGAGTTGACACTGTTGTATGGGGAGCTCCTAATAAGCTTCTTGGAGCTGATGGGAGCTGGATAAGACTTTTTCGCGATGGGGGCCAAGGAAGTGAGTCGGAACAGTCAGAAAAGCCAGCTGCACCAGTCCACCCATTCCACCCGAACATAACCATCCGACGAGGCGTGTTGGCATCAGAGTGTGCAGATATAATGCAGCAATTCTTCCAGCTGAGAAGAAAAAAGAAGGAAAAGAGGCAGGCAGGCCCACCAGCACCGCCTTCGTCCCGTGCTGTTTCTCACCATCCACGGAAGATACTTACGAAGCTGCATGACATCTTCCACATAATGTTCTGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002097 GO:0002100 GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006382 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016553 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MafB19-deam dCMP_cyt_deam_1

Protein Analysis

1050

Amino Acids

116.55

Weight (kDa)

5.9

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	846 - 945	7.3e-29	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	850 - 948	8.3e-24	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68720
fragaria_vesca	FvH4_4g28440 FvH4_4g28440 FvH4_4g28440
malus_domestica	MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1
prunus_persica	Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1
pyrus_communis	pycom13g04440 pycom16g04480
rosa_chinensis	RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401
rosa_laevigata	RLG00000006522
rosa_multiflora	Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377560
rosa_rugosa	Rorug04G0293500
rosa_samantha	Rh4AG347800 Rh4BG356600 Rh4CG371200
rosa_wichuraiana	Rw4G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2156
Acc36I	ACCTGC	1 cut(s)	1806
AccB1I	GGYRCC	2 cut(s)	979, 1537
AccI	GTMKAC	2 cut(s)	2150, 2753
AccII	CGCG	1 cut(s)	2886
AccIII	TCCGGA	1 cut(s)	871
AciI	CCGC	7 cut(s)	310, 502, 505, 1353, 1514, 2747, 3068
AclI	AACGTT	1 cut(s)	2724
AclWI	GGATC	1 cut(s)	1027
AcoI	YGGCCR	2 cut(s)	403, 1951
AcsI	RAATTY	6 cut(s)	169, 251, 1384, 2215, 2331, 2546
AcuI	CTGAAG	8 cut(s)	1062, 1188, 1425, 1521, 1545, 1608, 1622, 1638
AcvI	CACGTG	1 cut(s)	2648
AcyI	GRCGYC	1 cut(s)	2153
AfaI	GTAC	3 cut(s)	369, 786, 2619
AfiI	CCNNNNNNNGG	3 cut(s)	352, 498, 501
AhdI	GACNNNNNGTC	1 cut(s)	2193
AhlI	ACTAGT	1 cut(s)	1730
AjnI	CCWGG	5 cut(s)	528, 1540, 1714, 1940, 2008
Alw21I	GWGCWC	1 cut(s)	2839
Alw26I	GTCTC	9 cut(s)	227, 316, 368, 1127, 1258, 1364, 1868, 1952, 2180
AlwI	GGATC	1 cut(s)	1027
AlwNI	CAGNNNCTG	1 cut(s)	2342
Ama87I	CYCGRG	1 cut(s)	883
Aor13HI	TCCGGA	1 cut(s)	871
ApeKI	GCWGC	7 cut(s)	656, 761, 1775, 2585, 2930, 3007, 3118
ApoI	RAATTY	6 cut(s)	169, 251, 1384, 2215, 2331, 2546
ArsI	GACNNNNNNTTYG	2 cut(s)	1324, 1356
AseI	ATTAAT	1 cut(s)	1398
Asp700I	GAANNNNTTC	1 cut(s)	2365
AsuHPI	GGTGA	5 cut(s)	1325, 1559, 1913, 2192, 3083
AvaI	CYCGRG	1 cut(s)	883
AvaII	GGWCC	5 cut(s)	312, 489, 1818, 2013, 2383
AxyI	CCTNAGG	1 cut(s)	1701
BaeI	ACNNNNGTAYC	2 cut(s)	843, 876
BalI	TGGCCA	1 cut(s)	405
BanI	GGYRCC	2 cut(s)	979, 1537
BanII	GRGCYC	1 cut(s)	2839
BarI	GAAGNNNNNNTAC	4 cut(s)	852, 884, 2107, 2139
BbrPI	CACGTG	1 cut(s)	2648
BbsI	GAAGAC	3 cut(s)	110, 1596, 2166
Bbv12I	GWGCWC	1 cut(s)	2839
BbvCI	CCTCAGC	1 cut(s)	1853
BbvI	GCAGC	7 cut(s)	643, 748, 1762, 2572, 2917, 3019, 3105
BccI	CCATC	6 cut(s)	606, 1887, 2855, 2882, 2972, 3102
BceAI	ACGGC	2 cut(s)	1781, 1938
BcgI	CGANNNNNNTGC	2 cut(s)	3054, 3088
BciT130I	CCWGG	5 cut(s)	530, 1542, 1716, 1942, 2010
BciVI	GTATCC	1 cut(s)	2325
BclI	TGATCA	1 cut(s)	2023
BcoDI	GTCTC	9 cut(s)	227, 316, 368, 1127, 1258, 1364, 1868, 1952, 2180
BcuI	ACTAGT	1 cut(s)	1730
BfaI	CTAG	8 cut(s)	243, 347, 897, 933, 1014, 1731, 2301, 2660
BfmI	CTRYAG	1 cut(s)	1752
BfuAI	ACCTGC	1 cut(s)	1806
BfuI	GTATCC	1 cut(s)	2325
BisI	GCNGC	9 cut(s)	503, 506, 657, 762, 1776, 2586, 2931, 3008, 3119
BlpI	GCTNAGC	1 cut(s)	1425
BlsI	GCNGC	9 cut(s)	504, 507, 658, 763, 1777, 2587, 2932, 3009, 3120
Bme1390I	CCNGG	5 cut(s)	530, 1542, 1716, 1942, 2010
Bme18I	GGWCC	5 cut(s)	312, 489, 1818, 2013, 2383
BmeRI	GACNNNNNGTC	1 cut(s)	2193
BmeT110I	CYCGRG	1 cut(s)	883
BmrFI	CCNGG	5 cut(s)	530, 1542, 1716, 1942, 2010
BmsI	GCATC	6 cut(s)	74, 283, 643, 1162, 1399, 2993
BpiI	GAAGAC	3 cut(s)	110, 1596, 2166
BpmI	CTGGAG	6 cut(s)	1089, 1122, 1311, 1563, 1650, 2814
Bpu10I	CCTNAGC	1 cut(s)	1853
Bpu1102I	GCTNAGC	1 cut(s)	1425
BpuEI	CTTGAG	3 cut(s)	436, 800, 1359
BsaAI	YACGTR	1 cut(s)	2648
BsaHI	GRCGYC	1 cut(s)	2153
BsaI	GGTCTC	1 cut(s)	1868
BsaJI	CCNNGG	5 cut(s)	1715, 2009, 2221, 2896, 3098
BsaWI	WCCGGW	1 cut(s)	871
BsaXI	ACNNNNNCTCC	4 cut(s)	1120, 1150, 2110, 2140
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 498, 501
Bse118I	RCCGGY	1 cut(s)	1811
Bse1I	ACTGG	6 cut(s)	406, 1612, 2036, 2386, 2625, 2936
Bse21I	CCTNAGG	1 cut(s)	1701
Bse3DI	GCAATG	3 cut(s)	305, 357, 587
BseAI	TCCGGA	1 cut(s)	871
BseBI	CCWGG	5 cut(s)	530, 1542, 1716, 1942, 2010
BseDI	CCNNGG	5 cut(s)	1715, 2009, 2221, 2896, 3098
BseGI	GGATG	7 cut(s)	438, 955, 1346, 1675, 1682, 2964, 3094
BseLI	CCNNNNNNNGG	3 cut(s)	352, 498, 501
BseMI	GCAATG	3 cut(s)	305, 357, 587
BseNI	ACTGG	6 cut(s)	406, 1612, 2036, 2386, 2625, 2936
BseRI	GAGGAG	4 cut(s)	990, 1979, 2198, 2387
BseXI	GCAGC	7 cut(s)	643, 748, 1762, 2572, 2917, 3019, 3105
BsgI	GTGCAG	3 cut(s)	2457, 2916, 3015
Bsh1236I	CGCG	1 cut(s)	2886
BshNI	GGYRCC	2 cut(s)	979, 1537
BsiHKAI	GWGCWC	1 cut(s)	2839
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	2 cut(s)	872, 1812
BslFI	GGGAC	5 cut(s)	298, 583, 2026, 2396, 3061
BslI	CCNNNNNNNGG	3 cut(s)	352, 498, 501
BsmAI	GTCTC	9 cut(s)	227, 316, 368, 1127, 1258, 1364, 1868, 1952, 2180
BsmFI	GGGAC	5 cut(s)	298, 583, 2026, 2396, 3061
BsmI	GAATGC	4 cut(s)	88, 942, 1798, 2238
Bso31I	GGTCTC	1 cut(s)	1868
BsoBI	CYCGRG	1 cut(s)	883
Bsp1286I	GDGCHC	1 cut(s)	2839
Bsp13I	TCCGGA	1 cut(s)	871
Bsp143I	GATC	3 cut(s)	607, 1019, 2023
Bsp1720I	GCTNAGC	1 cut(s)	1425
Bsp68I	TCGCGA	1 cut(s)	2886
BspACI	CCGC	7 cut(s)	310, 502, 505, 1353, 1514, 2747, 3068
BspEI	TCCGGA	1 cut(s)	871
BspFNI	CGCG	1 cut(s)	2886
BspMI	ACCTGC	1 cut(s)	1806
BspPI	GGATC	1 cut(s)	1027
BspQI	GCTCTTC	1 cut(s)	570
BspT107I	GGYRCC	2 cut(s)	979, 1537
BspTNI	GGTCTC	1 cut(s)	1868
BsrDI	GCAATG	3 cut(s)	305, 357, 587
BsrFI	RCCGGY	1 cut(s)	1811
BsrI	ACTGG	6 cut(s)	406, 1612, 2036, 2386, 2625, 2936
BssAI	RCCGGY	1 cut(s)	1811
BssECI	CCNNGG	5 cut(s)	1715, 2009, 2221, 2896, 3098
BssMI	GATC	3 cut(s)	607, 1019, 2023
BssNI	GRCGYC	1 cut(s)	2153
BssT1I	CCWWGG	1 cut(s)	2896
Bst2UI	CCWGG	5 cut(s)	530, 1542, 1716, 1942, 2010
Bst6I	CTCTTC	3 cut(s)	570, 873, 2406
BstACI	GRCGYC	1 cut(s)	2153
BstBAI	YACGTR	1 cut(s)	2648
BstC8I	GCNNGC	5 cut(s)	2003, 2745, 2928, 3051, 3055
BstDSI	CCRYGG	1 cut(s)	3098
BstF5I	GGATG	7 cut(s)	438, 955, 1346, 1675, 1682, 2964, 3094
BstFNI	CGCG	1 cut(s)	2886
BstKTI	GATC	3 cut(s)	610, 1022, 2026
BstMAI	GTCTC	9 cut(s)	227, 316, 368, 1127, 1258, 1364, 1868, 1952, 2180
BstMBI	GATC	3 cut(s)	607, 1019, 2023
BstMWI	GCNNNNNNNGC	3 cut(s)	1754, 2582, 2892
BstNI	CCWGG	5 cut(s)	530, 1542, 1716, 1942, 2010
BstNSI	RCATGY	1 cut(s)	2005
BstSCI	CCNGG	5 cut(s)	528, 1540, 1714, 1940, 2008
BstSFI	CTRYAG	1 cut(s)	1752
BstUI	CGCG	1 cut(s)	2886
BstV1I	GCAGC	7 cut(s)	643, 748, 1762, 2572, 2917, 3019, 3105
BstV2I	GAAGAC	3 cut(s)	110, 1596, 2166
BstXI	CCANNNNNNTGG	1 cut(s)	1886
Bsu36I	CCTNAGG	1 cut(s)	1701
BsuI	GTATCC	1 cut(s)	2325
BtgI	CCRYGG	1 cut(s)	3098
BtgZI	GCGATG	1 cut(s)	2901
BtsCI	GGATG	7 cut(s)	438, 955, 1346, 1675, 1682, 2964, 3094
BtsI	GCAGTG	1 cut(s)	2564
BtsIMutI	CAGTG	7 cut(s)	983, 1128, 1978, 2043, 2349, 2564, 2820
BtuMI	TCGCGA	1 cut(s)	2886
BveI	ACCTGC	1 cut(s)	1806
Cac8I	GCNNGC	5 cut(s)	2003, 2745, 2928, 3051, 3055
CaiI	CAGNNNCTG	1 cut(s)	2342
Cfr10I	RCCGGY	1 cut(s)	1811
CseI	GACGC	1 cut(s)	2348
Csp6I	GTAC	3 cut(s)	368, 785, 2618
CviAII	CATG	7 cut(s)	677, 1484, 1556, 1868, 2002, 2690, 3122
CviQI	GTAC	3 cut(s)	368, 785, 2618
DpnI	GATC	3 cut(s)	609, 1021, 2025
DpnII	GATC	3 cut(s)	607, 1019, 2023
DriI	GACNNNNNGTC	1 cut(s)	2193
EaeI	YGGCCR	2 cut(s)	403, 1951
Eam1104I	CTCTTC	3 cut(s)	570, 873, 2406
Eam1105I	GACNNNNNGTC	1 cut(s)	2193
EarI	CTCTTC	3 cut(s)	570, 873, 2406
EciI	GGCGGA	1 cut(s)	1529
Ecl136II	GAGCTC	1 cut(s)	2837
Eco130I	CCWWGG	1 cut(s)	2896
Eco147I	AGGCCT	2 cut(s)	131, 1940
Eco24I	GRGCYC	1 cut(s)	2839
Eco31I	GGTCTC	1 cut(s)	1868
Eco32I	GATATC	1 cut(s)	2102
Eco47I	GGWCC	5 cut(s)	312, 489, 1818, 2013, 2383
Eco53kI	GAGCTC	1 cut(s)	2837
Eco57I	CTGAAG	8 cut(s)	1062, 1188, 1425, 1521, 1545, 1608, 1622, 1638
Eco72I	CACGTG	1 cut(s)	2648
Eco81I	CCTNAGG	1 cut(s)	1701
Eco88I	CYCGRG	1 cut(s)	883
EcoICRI	GAGCTC	1 cut(s)	2837
EcoO109I	RGGNCCY	2 cut(s)	489, 1649
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	5 cut(s)	528, 1540, 1714, 1940, 2008
EcoRV	GATATC	1 cut(s)	2102
EcoT14I	CCWWGG	1 cut(s)	2896
EcoT22I	ATGCAT	1 cut(s)	2708
EcoT38I	GRGCYC	1 cut(s)	2839
ErhI	CCWWGG	1 cut(s)	2896
FaeI	CATG	7 cut(s)	680, 1487, 1559, 1871, 2005, 2693, 3125
FalI	AAGNNNNNCTT	2 cut(s)	2553, 2585
FaqI	GGGAC	5 cut(s)	298, 583, 2026, 2396, 3061
FatI	CATG	7 cut(s)	676, 1483, 1555, 1867, 2001, 2689, 3121
FauNDI	CATATG	1 cut(s)	1823
FbaI	TGATCA	1 cut(s)	2023
FblI	GTMKAC	2 cut(s)	2150, 2753
Fnu4HI	GCNGC	9 cut(s)	503, 506, 657, 762, 1776, 2586, 2931, 3008, 3119
FokI	GGATG	7 cut(s)	425, 962, 1333, 1669, 1682, 2951, 3081
FriOI	GRGCYC	1 cut(s)	2839
Fsp4HI	GCNGC	9 cut(s)	503, 506, 657, 762, 1776, 2586, 2931, 3008, 3119
FspBI	CTAG	8 cut(s)	243, 347, 897, 933, 1014, 1731, 2301, 2660
GluI	GCNGC	9 cut(s)	503, 506, 657, 762, 1776, 2586, 2931, 3008, 3119
GsuI	CTGGAG	6 cut(s)	1089, 1122, 1311, 1563, 1650, 2814
HapII	CCGG	2 cut(s)	872, 1812
HgaI	GACGC	1 cut(s)	2348
Hin1I	GRCGYC	1 cut(s)	2153
Hin1II	CATG	7 cut(s)	680, 1487, 1559, 1871, 2005, 2693, 3125
HincII	GTYRAC	2 cut(s)	2151, 2818
HindII	GTYRAC	2 cut(s)	2151, 2818
HindIII	AAGCTT	3 cut(s)	32, 2456, 2846
HpaII	CCGG	2 cut(s)	872, 1812
HphI	GGTGA	5 cut(s)	1325, 1559, 1913, 2192, 3083
Hpy166II	GTNNAC	5 cut(s)	974, 2151, 2754, 2818, 2941
Hpy8I	GTNNAC	5 cut(s)	974, 2151, 2754, 2818, 2941
Hpy99I	CGWCG	2 cut(s)	2155, 2973
HpyAV	CCTTC	9 cut(s)	254, 903, 1468, 1597, 1662, 2575, 2629, 3031, 3081
HpyCH4IV	ACGT	3 cut(s)	2153, 2647, 2724
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1754, 2582, 2892
HpySE526I	ACGT	3 cut(s)	2153, 2647, 2724
Hsp92I	GRCGYC	1 cut(s)	2153
Hsp92II	CATG	7 cut(s)	680, 1487, 1559, 1871, 2005, 2693, 3125
Kpn2I	TCCGGA	1 cut(s)	871
Ksp22I	TGATCA	1 cut(s)	2023
Kzo9I	GATC	3 cut(s)	607, 1019, 2023
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	6 cut(s)	1292, 2795, 2834, 2842, 2855, 2865
Lsp1109I	GCAGC	7 cut(s)	643, 748, 1762, 2572, 2917, 3019, 3105
LweI	GCATC	6 cut(s)	74, 283, 643, 1162, 1399, 2993
MaeI	CTAG	8 cut(s)	243, 347, 897, 933, 1014, 1731, 2301, 2660
MaeII	ACGT	3 cut(s)	2153, 2647, 2724
MaeIII	GTNAC	8 cut(s)	138, 329, 1045, 1124, 1672, 2256, 2345, 2764
MalI	GATC	3 cut(s)	609, 1021, 2025
MboI	GATC	3 cut(s)	607, 1019, 2023
MfeI	CAATTG	1 cut(s)	1004
MhlI	GDGCHC	1 cut(s)	2839
MlsI	TGGCCA	1 cut(s)	405
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	9 cut(s)	1115, 1129, 1260, 1366, 1586, 2203, 2423, 2759, 2915
MmeI	TCCRAC	3 cut(s)	1176, 2889, 2992
Mox20I	TGGCCA	1 cut(s)	405
Mph1103I	ATGCAT	1 cut(s)	2708
MroI	TCCGGA	1 cut(s)	871
MroXI	GAANNNNTTC	1 cut(s)	2365
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	7 cut(s)	153, 525, 825, 1398, 1692, 1848, 2655
MslI	CAYNNNNRTG	4 cut(s)	545, 681, 1887, 2989
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	4 cut(s)	1353, 1600, 2930, 3022
MspI	CCGG	2 cut(s)	872, 1812
MspR9I	CCNGG	5 cut(s)	530, 1542, 1716, 1942, 2010
MunI	CAATTG	1 cut(s)	1004
Mva1269I	GAATGC	4 cut(s)	88, 942, 1798, 2238
MvaI	CCWGG	5 cut(s)	530, 1542, 1716, 1942, 2010
MvnI	CGCG	1 cut(s)	2886
MwoI	GCNNNNNNNGC	3 cut(s)	1754, 2582, 2892
NdeI	CATATG	1 cut(s)	1823
NdeII	GATC	3 cut(s)	607, 1019, 2023
NlaIII	CATG	7 cut(s)	680, 1487, 1559, 1871, 2005, 2693, 3125
NmuCI	GTSAC	5 cut(s)	138, 329, 1045, 1672, 2256
NruI	TCGCGA	1 cut(s)	2886
NsiI	ATGCAT	1 cut(s)	2708
NspI	RCATGY	1 cut(s)	2005
PaeI	GCATGC	1 cut(s)	2005
PceI	AGGCCT	2 cut(s)	131, 1940
PciSI	GCTCTTC	1 cut(s)	570
PctI	GAATGC	4 cut(s)	88, 942, 1798, 2238
PdmI	GAANNNNTTC	1 cut(s)	2365
PfeI	GAWTC	7 cut(s)	239, 1202, 1922, 2252, 2279, 2515, 2678
PflFI	GACNNNGTC	1 cut(s)	1342
PkrI	GCNGC	9 cut(s)	504, 507, 658, 763, 1777, 2587, 2932, 3009, 3120
PleI	GAGTC	9 cut(s)	1114, 1129, 1259, 1366, 1586, 2202, 2422, 2758, 2914
PmaCI	CACGTG	1 cut(s)	2648
PmlI	CACGTG	1 cut(s)	2648
PpsI	GAGTC	9 cut(s)	1114, 1129, 1259, 1366, 1586, 2202, 2422, 2758, 2914
Ppu21I	YACGTR	1 cut(s)	2648
PpuMI	RGGWCCY	1 cut(s)	489
PshBI	ATTAAT	1 cut(s)	1398
Psp124BI	GAGCTC	1 cut(s)	2839
Psp1406I	AACGTT	1 cut(s)	2724
Psp5II	RGGWCCY	1 cut(s)	489
Psp6I	CCWGG	5 cut(s)	528, 1540, 1714, 1940, 2008
PspCI	CACGTG	1 cut(s)	2648
PspGI	CCWGG	5 cut(s)	528, 1540, 1714, 1940, 2008
PspPPI	RGGWCCY	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	2342
PsyI	GACNNNGTC	1 cut(s)	1342
PvuII	CAGCTG	3 cut(s)	1600, 2930, 3022
RruI	TCGCGA	1 cut(s)	2886
RsaI	GTAC	3 cut(s)	369, 786, 2619
RsaNI	GTAC	3 cut(s)	368, 785, 2618
RseI	CAYNNNNRTG	4 cut(s)	545, 681, 1887, 2989
SacI	GAGCTC	1 cut(s)	2839
SalI	GTCGAC	1 cut(s)	2149
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	7 cut(s)	153, 525, 825, 1398, 1692, 1848, 2655
SatI	GCNGC	9 cut(s)	503, 506, 657, 762, 1776, 2586, 2931, 3008, 3119
Sau3AI	GATC	3 cut(s)	607, 1019, 2023
SchI	GAGTC	9 cut(s)	1115, 1129, 1260, 1366, 1586, 2203, 2423, 2759, 2915
ScrFI	CCNGG	5 cut(s)	530, 1542, 1716, 1942, 2010
SduI	GDGCHC	1 cut(s)	2839
SfaNI	GCATC	6 cut(s)	74, 283, 643, 1162, 1399, 2993
SfcI	CTRYAG	1 cut(s)	1752
SinI	GGWCC	5 cut(s)	312, 489, 1818, 2013, 2383
SmiMI	CAYNNNNRTG	4 cut(s)	545, 681, 1887, 2989
SmlI	CTYRAG	3 cut(s)	451, 815, 1374
SmoI	CTYRAG	3 cut(s)	451, 815, 1374
SpeI	ACTAGT	1 cut(s)	1730
SphI	GCATGC	1 cut(s)	2005
SseBI	AGGCCT	2 cut(s)	131, 1940
SsiI	CCGC	7 cut(s)	310, 502, 505, 1353, 1514, 2747, 3068
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	8 cut(s)	243, 347, 897, 933, 1014, 1731, 2301, 2660
SstI	GAGCTC	1 cut(s)	2839
StuI	AGGCCT	2 cut(s)	131, 1940
StyD4I	CCNGG	5 cut(s)	528, 1540, 1714, 1940, 2008
StyI	CCWWGG	1 cut(s)	2896
TaiI	ACGT	3 cut(s)	2156, 2650, 2727
TaqI	TCGA	3 cut(s)	1040, 1158, 2150
TatI	WGTACW	3 cut(s)	367, 784, 2617
TauI	GCSGC	2 cut(s)	505, 508
TfiI	GAWTC	7 cut(s)	239, 1202, 1922, 2252, 2279, 2515, 2678
Tru1I	TTAA	7 cut(s)	153, 525, 825, 1398, 1692, 1848, 2655
Tru9I	TTAA	7 cut(s)	153, 525, 825, 1398, 1692, 1848, 2655
TscAI	CASTG	7 cut(s)	990, 1135, 1978, 2043, 2356, 2571, 2827
TseFI	GTSAC	5 cut(s)	138, 329, 1045, 1672, 2256
TseI	GCWGC	7 cut(s)	656, 761, 1775, 2585, 2930, 3007, 3118
Tsp45I	GTSAC	5 cut(s)	138, 329, 1045, 1672, 2256
TspGWI	ACGGA	1 cut(s)	3115
TspRI	CASTG	7 cut(s)	990, 1135, 1978, 2043, 2356, 2571, 2827
Tth111I	GACNNNGTC	1 cut(s)	1342
VpaK11BI	GGWCC	5 cut(s)	312, 489, 1818, 2013, 2383
VspI	ATTAAT	1 cut(s)	1398
XapI	RAATTY	6 cut(s)	169, 251, 1384, 2215, 2331, 2546
XbaI	TCTAGA	1 cut(s)	242
XceI	RCATGY	1 cut(s)	2005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1286
XmiI	GTMKAC	2 cut(s)	2150, 2753
XmnI	GAANNNNTTC	1 cut(s)	2365
XspI	CTAG	8 cut(s)	243, 347, 897, 933, 1014, 1731, 2301, 2660
ZraI	GACGTC	1 cut(s)	2154
Zsp2I	ATGCAT	1 cut(s)	2708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.