tRNA(Adenine(34)) deaminase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68720 |
| fragaria_vesca | FvH4_4g28440 FvH4_4g28440 FvH4_4g28440 |
| malus_domestica | MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1 |
| prunus_persica | Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 |
| pyrus_communis | pycom13g04440 pycom16g04480 |
| rosa_chinensis | RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401 |
| rosa_laevigata | RLG00000006522 |
| rosa_multiflora | Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00377560 |
| rosa_rugosa | Rorug04G0293500 |
| rosa_samantha | Rh4AG347800 Rh4BG356600 Rh4CG371200 |
| rosa_wichuraiana | Rw4G030410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3326 |
| Acc16I | TGCGCA | 1 cut(s) | 4282 |
| Acc36I | ACCTGC | 1 cut(s) | 2976 |
| AccB1I | GGYRCC | 2 cut(s) | 2149, 2707 |
| AccI | GTMKAC | 2 cut(s) | 3320, 4040 |
| AccII | CGCG | 1 cut(s) | 4173 |
| AccIII | TCCGGA | 1 cut(s) | 2041 |
| AciI | CCGC | 9 cut(s) | 240, 1480, 1672, 1675, 2523, 2684, 2952, 4034, 4355 |
| AclI | AACGTT | 1 cut(s) | 4011 |
| AclWI | GGATC | 1 cut(s) | 2197 |
| AcoI | YGGCCR | 2 cut(s) | 1573, 3121 |
| AcsI | RAATTY | 8 cut(s) | 1339, 1421, 2554, 3385, 3474, 3529, 3618, 3833 |
| AcuI | CTGAAG | 9 cut(s) | 951, 2232, 2358, 2595, 2691, 2715, 2778, 2792, 2808 |
| AcvI | CACGTG | 1 cut(s) | 3935 |
| AcyI | GRCGYC | 1 cut(s) | 3323 |
| AdeI | CACNNNGTG | 1 cut(s) | 281 |
| AfaI | GTAC | 5 cut(s) | 803, 1094, 1539, 1956, 3906 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 232, 251, 1018, 1522, 1668, 1671, 2958 |
| AflII | CTTAAG | 1 cut(s) | 1040 |
| AgeI | ACCGGT | 1 cut(s) | 213 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3363 |
| AhlI | ACTAGT | 1 cut(s) | 2900 |
| AjnI | CCWGG | 4 cut(s) | 1024, 1698, 2710, 3110 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 919, 951 |
| Alw21I | GWGCWC | 2 cut(s) | 405, 4126 |
| AlwI | GGATC | 1 cut(s) | 2197 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3629 |
| Aor13HI | TCCGGA | 1 cut(s) | 2041 |
| ApeKI | GCWGC | 6 cut(s) | 1826, 1931, 3872, 4217, 4294, 4405 |
| ApoI | RAATTY | 8 cut(s) | 1339, 1421, 2554, 3385, 3474, 3529, 3618, 3833 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2494, 2526 |
| AseI | ATTAAT | 1 cut(s) | 2568 |
| AsiGI | ACCGGT | 1 cut(s) | 213 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3508, 3652 |
| AspLEI | GCGC | 1 cut(s) | 4283 |
| AsuC2I | CCSGG | 3 cut(s) | 227, 246, 252 |
| AsuHPI | GGTGA | 7 cut(s) | 440, 1139, 2495, 2729, 3083, 3362, 4370 |
| AvaII | GGWCC | 7 cut(s) | 211, 242, 248, 1482, 1659, 2988, 3670 |
| AxyI | CCTNAGG | 1 cut(s) | 2871 |
| BaeGI | GKGCMC | 1 cut(s) | 123 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2013, 2046 |
| BalI | TGGCCA | 1 cut(s) | 1575 |
| BanI | GGYRCC | 2 cut(s) | 2149, 2707 |
| BanII | GRGCYC | 1 cut(s) | 4126 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2022, 2054, 3277, 3309 |
| BbrPI | CACGTG | 1 cut(s) | 3935 |
| BbsI | GAAGAC | 4 cut(s) | 957, 1280, 2766, 3336 |
| Bbv12I | GWGCWC | 2 cut(s) | 405, 4126 |
| BbvCI | CCTCAGC | 2 cut(s) | 1116, 3023 |
| BbvI | GCAGC | 6 cut(s) | 1813, 1918, 3859, 4204, 4306, 4392 |
| BccI | CCATC | 9 cut(s) | 64, 168, 371, 1067, 1776, 3057, 4142, 4169, 4389 |
| BceAI | ACGGC | 2 cut(s) | 2951, 3108 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 715, 749, 4341, 4375 |
| BciT130I | CCWGG | 4 cut(s) | 1026, 1700, 2712, 3112 |
| BciVI | GTATCC | 1 cut(s) | 3612 |
| BclI | TGATCA | 1 cut(s) | 3193 |
| BcnI | CCSGG | 3 cut(s) | 227, 246, 252 |
| BcuI | ACTAGT | 1 cut(s) | 2900 |
| BfmI | CTRYAG | 2 cut(s) | 1152, 2922 |
| BfrI | CTTAAG | 1 cut(s) | 1040 |
| BfuAI | ACCTGC | 1 cut(s) | 2976 |
| BfuI | GTATCC | 1 cut(s) | 3612 |
| BisI | GCNGC | 8 cut(s) | 1673, 1676, 1827, 1932, 3873, 4218, 4295, 4406 |
| BlpI | GCTNAGC | 2 cut(s) | 404, 2595 |
| BlsI | GCNGC | 8 cut(s) | 1674, 1677, 1828, 1933, 3874, 4219, 4296, 4407 |
| Bme1390I | CCNGG | 7 cut(s) | 227, 246, 252, 1026, 1700, 2712, 3112 |
| Bme18I | GGWCC | 7 cut(s) | 211, 242, 248, 1482, 1659, 2988, 3670 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3363 |
| BmrFI | CCNGG | 7 cut(s) | 227, 246, 252, 1026, 1700, 2712, 3112 |
| BmrI | ACTGGG | 1 cut(s) | 10 |
| BmsI | GCATC | 6 cut(s) | 1102, 1244, 1813, 2332, 2569, 4280 |
| BmuI | ACTGGG | 1 cut(s) | 10 |
| BpiI | GAAGAC | 4 cut(s) | 957, 1280, 2766, 3336 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3173, 3205 |
| BpmI | CTGGAG | 8 cut(s) | 497, 2076, 2259, 2292, 2481, 2733, 2820, 4101 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1116, 3023 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 404, 2595 |
| BpuEI | CTTGAG | 3 cut(s) | 1606, 1970, 2529 |
| BpuMI | CCSGG | 3 cut(s) | 227, 246, 252 |
| BsaAI | YACGTR | 1 cut(s) | 3935 |
| BsaBI | GATNNNNATC | 1 cut(s) | 838 |
| BsaHI | GRCGYC | 1 cut(s) | 3323 |
| BsaI | GGTCTC | 2 cut(s) | 3038, 3176 |
| BsaJI | CCNNGG | 4 cut(s) | 2648, 3391, 4183, 4385 |
| BsaWI | WCCGGW | 2 cut(s) | 213, 2041 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 232, 251, 1018, 1522, 1668, 1671, 2958 |
| Bse118I | RCCGGY | 1 cut(s) | 213 |
| Bse1I | ACTGG | 7 cut(s) | 16, 939, 1576, 2782, 2986, 3912, 4223 |
| Bse21I | CCTNAGG | 1 cut(s) | 2871 |
| Bse3DI | GCAATG | 2 cut(s) | 1475, 1757 |
| Bse8I | GATNNNNATC | 1 cut(s) | 838 |
| BseAI | TCCGGA | 1 cut(s) | 2041 |
| BseBI | CCWGG | 4 cut(s) | 1026, 1700, 2712, 3112 |
| BseDI | CCNNGG | 4 cut(s) | 2648, 3391, 4183, 4385 |
| BseGI | GGATG | 8 cut(s) | 382, 1608, 2125, 2516, 2845, 2852, 3835, 4381 |
| BseJI | GATNNNNATC | 1 cut(s) | 838 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 232, 251, 1018, 1522, 1668, 1671, 2958 |
| BseMI | GCAATG | 2 cut(s) | 1475, 1757 |
| BseNI | ACTGG | 7 cut(s) | 16, 939, 1576, 2782, 2986, 3912, 4223 |
| BseSI | GKGCMC | 1 cut(s) | 123 |
| BseXI | GCAGC | 6 cut(s) | 1813, 1918, 3859, 4204, 4306, 4392 |
| BsgI | GTGCAG | 2 cut(s) | 3744, 4203 |
| Bsh1236I | CGCG | 1 cut(s) | 4173 |
| BshNI | GGYRCC | 2 cut(s) | 2149, 2707 |
| BshTI | ACCGGT | 1 cut(s) | 213 |
| BsiHKAI | GWGCWC | 2 cut(s) | 405, 4126 |
| BsiSI | CCGG | 5 cut(s) | 214, 226, 245, 251, 2042 |
| BslFI | GGGAC | 4 cut(s) | 224, 1468, 1753, 3683 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 232, 251, 1018, 1522, 1668, 1671, 2958 |
| BsmFI | GGGAC | 4 cut(s) | 224, 1468, 1753, 3683 |
| BsmI | GAATGC | 6 cut(s) | 242, 1258, 2112, 2968, 3408, 3552 |
| Bso31I | GGTCTC | 2 cut(s) | 3038, 3176 |
| Bsp1286I | GDGCHC | 3 cut(s) | 123, 405, 4126 |
| Bsp13I | TCCGGA | 1 cut(s) | 2041 |
| Bsp143I | GATC | 3 cut(s) | 1777, 2189, 3193 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 404, 2595 |
| Bsp68I | TCGCGA | 1 cut(s) | 4173 |
| BspACI | CCGC | 9 cut(s) | 240, 1480, 1672, 1675, 2523, 2684, 2952, 4034, 4355 |
| BspEI | TCCGGA | 1 cut(s) | 2041 |
| BspFNI | CGCG | 1 cut(s) | 4173 |
| BspMAI | CTGCAG | 1 cut(s) | 1156 |
| BspMI | ACCTGC | 1 cut(s) | 2976 |
| BspPI | GGATC | 1 cut(s) | 2197 |
| BspQI | GCTCTTC | 1 cut(s) | 1740 |
| BspT107I | GGYRCC | 2 cut(s) | 2149, 2707 |
| BspTI | CTTAAG | 1 cut(s) | 1040 |
| BspTNI | GGTCTC | 2 cut(s) | 3038, 3176 |
| BsrDI | GCAATG | 2 cut(s) | 1475, 1757 |
| BsrFI | RCCGGY | 1 cut(s) | 213 |
| BsrI | ACTGG | 7 cut(s) | 16, 939, 1576, 2782, 2986, 3912, 4223 |
| BssAI | RCCGGY | 1 cut(s) | 213 |
| BssECI | CCNNGG | 4 cut(s) | 2648, 3391, 4183, 4385 |
| BssMI | GATC | 3 cut(s) | 1777, 2189, 3193 |
| BssNI | GRCGYC | 1 cut(s) | 3323 |
| BssT1I | CCWWGG | 2 cut(s) | 2648, 4183 |
| Bst2UI | CCWGG | 4 cut(s) | 1026, 1700, 2712, 3112 |
| Bst6I | CTCTTC | 8 cut(s) | 516, 579, 632, 697, 1083, 1740, 2043, 3693 |
| BstACI | GRCGYC | 1 cut(s) | 3323 |
| BstAFI | CTTAAG | 1 cut(s) | 1040 |
| BstBAI | YACGTR | 1 cut(s) | 3935 |
| BstC8I | GCNNGC | 7 cut(s) | 410, 2197, 3173, 4032, 4215, 4338, 4342 |
| BstDSI | CCRYGG | 1 cut(s) | 4385 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1016 |
| BstF5I | GGATG | 8 cut(s) | 382, 1608, 2125, 2516, 2845, 2852, 3835, 4381 |
| BstFNI | CGCG | 1 cut(s) | 4173 |
| BstHHI | GCGC | 1 cut(s) | 4283 |
| BstKTI | GATC | 3 cut(s) | 1780, 2192, 3196 |
| BstMBI | GATC | 3 cut(s) | 1777, 2189, 3193 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 409, 2924, 2951, 3491, 3869, 4179 |
| BstNI | CCWGG | 4 cut(s) | 1026, 1700, 2712, 3112 |
| BstNSI | RCATGY | 2 cut(s) | 1174, 3175 |
| BstSCI | CCNGG | 7 cut(s) | 225, 244, 250, 1024, 1698, 2710, 3110 |
| BstSFI | CTRYAG | 2 cut(s) | 1152, 2922 |
| BstSLI | GKGCMC | 1 cut(s) | 123 |
| BstUI | CGCG | 1 cut(s) | 4173 |
| BstV1I | GCAGC | 6 cut(s) | 1813, 1918, 3859, 4204, 4306, 4392 |
| BstV2I | GAAGAC | 4 cut(s) | 957, 1280, 2766, 3336 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3056 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2871 |
| BsuI | GTATCC | 1 cut(s) | 3612 |
| BtgI | CCRYGG | 1 cut(s) | 4385 |
| BtgZI | GCGATG | 1 cut(s) | 4188 |
| BtsCI | GGATG | 8 cut(s) | 382, 1608, 2125, 2516, 2845, 2852, 3835, 4381 |
| BtsI | GCAGTG | 2 cut(s) | 781, 3851 |
| BtsIMutI | CAGTG | 8 cut(s) | 781, 946, 1090, 2153, 2298, 3636, 3851, 4107 |
| BtuMI | TCGCGA | 1 cut(s) | 4173 |
| BveI | ACCTGC | 1 cut(s) | 2976 |
| Cac8I | GCNNGC | 7 cut(s) | 410, 2197, 3173, 4032, 4215, 4338, 4342 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3629 |
| CfoI | GCGC | 1 cut(s) | 4283 |
| Cfr10I | RCCGGY | 1 cut(s) | 213 |
| CpoI | CGGWCCG | 1 cut(s) | 242 |
| CseI | GACGC | 2 cut(s) | 60, 3635 |
| CsiI | ACCWGGT | 1 cut(s) | 1024 |
| Csp6I | GTAC | 5 cut(s) | 802, 1093, 1538, 1955, 3905 |
| CspAI | ACCGGT | 1 cut(s) | 213 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 286, 321 |
| CspI | CGGWCCG | 1 cut(s) | 242 |
| CviQI | GTAC | 5 cut(s) | 802, 1093, 1538, 1955, 3905 |
| DpnI | GATC | 3 cut(s) | 1779, 2191, 3195 |
| DpnII | GATC | 3 cut(s) | 1777, 2189, 3193 |
| DraIII | CACNNNGTG | 1 cut(s) | 281 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3363 |
| EaeI | YGGCCR | 2 cut(s) | 1573, 3121 |
| Eam1104I | CTCTTC | 8 cut(s) | 516, 579, 632, 697, 1083, 1740, 2043, 3693 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3363 |
| EarI | CTCTTC | 8 cut(s) | 516, 579, 632, 697, 1083, 1740, 2043, 3693 |
| EciI | GGCGGA | 1 cut(s) | 2699 |
| Ecl136II | GAGCTC | 1 cut(s) | 4124 |
| Eco130I | CCWWGG | 2 cut(s) | 2648, 4183 |
| Eco147I | AGGCCT | 2 cut(s) | 1301, 3110 |
| Eco24I | GRGCYC | 1 cut(s) | 4126 |
| Eco31I | GGTCTC | 2 cut(s) | 3038, 3176 |
| Eco47I | GGWCC | 7 cut(s) | 211, 242, 248, 1482, 1659, 2988, 3670 |
| Eco53kI | GAGCTC | 1 cut(s) | 4124 |
| Eco57I | CTGAAG | 9 cut(s) | 951, 2232, 2358, 2595, 2691, 2715, 2778, 2792, 2808 |
| Eco72I | CACGTG | 1 cut(s) | 3935 |
| Eco81I | CCTNAGG | 1 cut(s) | 2871 |
| EcoICRI | GAGCTC | 1 cut(s) | 4124 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1016 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1659, 2819 |
| EcoRI | GAATTC | 1 cut(s) | 1339 |
| EcoRII | CCWGG | 4 cut(s) | 1024, 1698, 2710, 3110 |
| EcoT14I | CCWWGG | 2 cut(s) | 2648, 4183 |
| EcoT22I | ATGCAT | 1 cut(s) | 3995 |
| EcoT38I | GRGCYC | 1 cut(s) | 4126 |
| ErhI | CCWWGG | 2 cut(s) | 2648, 4183 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3840, 3872 |
| FaqI | GGGAC | 4 cut(s) | 224, 1468, 1753, 3683 |
| FauNDI | CATATG | 1 cut(s) | 2993 |
| FbaI | TGATCA | 1 cut(s) | 3193 |
| FblI | GTMKAC | 2 cut(s) | 3320, 4040 |
| Fnu4HI | GCNGC | 8 cut(s) | 1673, 1676, 1827, 1932, 3873, 4218, 4295, 4406 |
| FokI | GGATG | 8 cut(s) | 389, 1595, 2132, 2503, 2839, 2852, 3842, 4368 |
| FriOI | GRGCYC | 1 cut(s) | 4126 |
| Fsp4HI | GCNGC | 8 cut(s) | 1673, 1676, 1827, 1932, 3873, 4218, 4295, 4406 |
| FspI | TGCGCA | 1 cut(s) | 4282 |
| GlaI | GCGC | 1 cut(s) | 4282 |
| GluI | GCNGC | 8 cut(s) | 1673, 1676, 1827, 1932, 3873, 4218, 4295, 4406 |
| GsuI | CTGGAG | 8 cut(s) | 497, 2076, 2259, 2292, 2481, 2733, 2820, 4101 |
| HapII | CCGG | 5 cut(s) | 214, 226, 245, 251, 2042 |
| HgaI | GACGC | 2 cut(s) | 60, 3635 |
| HhaI | GCGC | 1 cut(s) | 4283 |
| Hin1I | GRCGYC | 1 cut(s) | 3323 |
| Hin6I | GCGC | 1 cut(s) | 4281 |
| HinP1I | GCGC | 1 cut(s) | 4281 |
| HincII | GTYRAC | 3 cut(s) | 75, 3321, 4105 |
| HindII | GTYRAC | 3 cut(s) | 75, 3321, 4105 |
| HindIII | AAGCTT | 3 cut(s) | 1202, 3743, 4133 |
| HpaII | CCGG | 5 cut(s) | 214, 226, 245, 251, 2042 |
| HphI | GGTGA | 7 cut(s) | 440, 1139, 2495, 2729, 3083, 3362, 4370 |
| Hpy166II | GTNNAC | 6 cut(s) | 75, 2144, 3321, 4041, 4105, 4228 |
| Hpy8I | GTNNAC | 6 cut(s) | 75, 2144, 3321, 4041, 4105, 4228 |
| Hpy99I | CGWCG | 2 cut(s) | 3325, 4260 |
| HpyCH4IV | ACGT | 3 cut(s) | 3323, 3934, 4011 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 409, 2924, 2951, 3491, 3869, 4179 |
| HpySE526I | ACGT | 3 cut(s) | 3323, 3934, 4011 |
| Hsp92I | GRCGYC | 1 cut(s) | 3323 |
| HspAI | GCGC | 1 cut(s) | 4281 |
| Kpn2I | TCCGGA | 1 cut(s) | 2041 |
| Ksp22I | TGATCA | 1 cut(s) | 3193 |
| Kzo9I | GATC | 3 cut(s) | 1777, 2189, 3193 |
| LguI | GCTCTTC | 1 cut(s) | 1740 |
| LmnI | GCTCC | 7 cut(s) | 433, 2462, 4082, 4121, 4129, 4142, 4152 |
| Lsp1109I | GCAGC | 6 cut(s) | 1813, 1918, 3859, 4204, 4306, 4392 |
| LweI | GCATC | 6 cut(s) | 1102, 1244, 1813, 2332, 2569, 4280 |
| MabI | ACCWGGT | 1 cut(s) | 1024 |
| MaeII | ACGT | 3 cut(s) | 3323, 3934, 4011 |
| MalI | GATC | 3 cut(s) | 1779, 2191, 3195 |
| MboI | GATC | 3 cut(s) | 1777, 2189, 3193 |
| MfeI | CAATTG | 1 cut(s) | 2174 |
| MhlI | GDGCHC | 3 cut(s) | 123, 405, 4126 |
| MlsI | TGGCCA | 1 cut(s) | 1575 |
| MluNI | TGGCCA | 1 cut(s) | 1575 |
| MlyI | GAGTC | 9 cut(s) | 404, 858, 2299, 2430, 2536, 2756, 3373, 3710, 4046 |
| MmeI | TCCRAC | 2 cut(s) | 533, 2346 |
| Mox20I | TGGCCA | 1 cut(s) | 1575 |
| Mph1103I | ATGCAT | 1 cut(s) | 3995 |
| MroI | TCCGGA | 1 cut(s) | 2041 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3508, 3652 |
| MscI | TGGCCA | 1 cut(s) | 1575 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1715, 1851, 3057, 4276 |
| Msp20I | TGGCCA | 1 cut(s) | 1575 |
| MspA1I | CMGCKG | 4 cut(s) | 2523, 2770, 4217, 4309 |
| MspCI | CTTAAG | 1 cut(s) | 1040 |
| MspI | CCGG | 5 cut(s) | 214, 226, 245, 251, 2042 |
| MspR9I | CCNGG | 7 cut(s) | 227, 246, 252, 1026, 1700, 2712, 3112 |
| MunI | CAATTG | 1 cut(s) | 2174 |
| Mva1269I | GAATGC | 6 cut(s) | 242, 1258, 2112, 2968, 3408, 3552 |
| MvaI | CCWGG | 4 cut(s) | 1026, 1700, 2712, 3112 |
| MvnI | CGCG | 1 cut(s) | 4173 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 409, 2924, 2951, 3491, 3869, 4179 |
| NciI | CCSGG | 3 cut(s) | 227, 246, 252 |
| NdeI | CATATG | 1 cut(s) | 2993 |
| NdeII | GATC | 3 cut(s) | 1777, 2189, 3193 |
| NmuCI | GTSAC | 4 cut(s) | 1308, 1499, 2842, 3426 |
| NruI | TCGCGA | 1 cut(s) | 4173 |
| NsbI | TGCGCA | 1 cut(s) | 4282 |
| NsiI | ATGCAT | 1 cut(s) | 3995 |
| NspI | RCATGY | 2 cut(s) | 1174, 3175 |
| PaeI | GCATGC | 1 cut(s) | 3175 |
| PceI | AGGCCT | 2 cut(s) | 1301, 3110 |
| PciSI | GCTCTTC | 1 cut(s) | 1740 |
| PctI | GAATGC | 6 cut(s) | 242, 1258, 2112, 2968, 3408, 3552 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3508, 3652 |
| PflFI | GACNNNGTC | 1 cut(s) | 2512 |
| PinAI | ACCGGT | 1 cut(s) | 213 |
| PkrI | GCNGC | 8 cut(s) | 1674, 1677, 1828, 1933, 3874, 4219, 4296, 4407 |
| PleI | GAGTC | 9 cut(s) | 403, 857, 2299, 2429, 2536, 2756, 3372, 3709, 4045 |
| PmaCI | CACGTG | 1 cut(s) | 3935 |
| PmlI | CACGTG | 1 cut(s) | 3935 |
| PpsI | GAGTC | 9 cut(s) | 403, 857, 2299, 2429, 2536, 2756, 3372, 3709, 4045 |
| Ppu21I | YACGTR | 1 cut(s) | 3935 |
| PpuMI | RGGWCCY | 1 cut(s) | 1659 |
| PshBI | ATTAAT | 1 cut(s) | 2568 |
| Psp124BI | GAGCTC | 1 cut(s) | 4126 |
| Psp1406I | AACGTT | 1 cut(s) | 4011 |
| Psp5II | RGGWCCY | 1 cut(s) | 1659 |
| Psp6I | CCWGG | 4 cut(s) | 1024, 1698, 2710, 3110 |
| PspCI | CACGTG | 1 cut(s) | 3935 |
| PspGI | CCWGG | 4 cut(s) | 1024, 1698, 2710, 3110 |
| PspPPI | RGGWCCY | 1 cut(s) | 1659 |
| PstI | CTGCAG | 1 cut(s) | 1156 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3629 |
| PsyI | GACNNNGTC | 1 cut(s) | 2512 |
| PvuII | CAGCTG | 3 cut(s) | 2770, 4217, 4309 |
| RruI | TCGCGA | 1 cut(s) | 4173 |
| RsaI | GTAC | 5 cut(s) | 803, 1094, 1539, 1956, 3906 |
| RsaNI | GTAC | 5 cut(s) | 802, 1093, 1538, 1955, 3905 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1715, 1851, 3057, 4276 |
| Rsr2I | CGGWCCG | 1 cut(s) | 242 |
| RsrII | CGGWCCG | 1 cut(s) | 242 |
| SacI | GAGCTC | 1 cut(s) | 4126 |
| SalI | GTCGAC | 1 cut(s) | 3319 |
| SapI | GCTCTTC | 1 cut(s) | 1740 |
| SatI | GCNGC | 8 cut(s) | 1673, 1676, 1827, 1932, 3873, 4218, 4295, 4406 |
| Sau3AI | GATC | 3 cut(s) | 1777, 2189, 3193 |
| SchI | GAGTC | 9 cut(s) | 404, 858, 2299, 2430, 2536, 2756, 3373, 3710, 4046 |
| ScrFI | CCNGG | 7 cut(s) | 227, 246, 252, 1026, 1700, 2712, 3112 |
| SduI | GDGCHC | 3 cut(s) | 123, 405, 4126 |
| SexAI | ACCWGGT | 1 cut(s) | 1024 |
| SfaNI | GCATC | 6 cut(s) | 1102, 1244, 1813, 2332, 2569, 4280 |
| SfcI | CTRYAG | 2 cut(s) | 1152, 2922 |
| SinI | GGWCC | 7 cut(s) | 211, 242, 248, 1482, 1659, 2988, 3670 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1715, 1851, 3057, 4276 |
| SmlI | CTYRAG | 4 cut(s) | 1040, 1621, 1985, 2544 |
| SmoI | CTYRAG | 4 cut(s) | 1040, 1621, 1985, 2544 |
| SpeI | ACTAGT | 1 cut(s) | 2900 |
| SphI | GCATGC | 1 cut(s) | 3175 |
| SseBI | AGGCCT | 2 cut(s) | 1301, 3110 |
| SsiI | CCGC | 9 cut(s) | 240, 1480, 1672, 1675, 2523, 2684, 2952, 4034, 4355 |
| SspI | AATATT | 1 cut(s) | 1603 |
| SstI | GAGCTC | 1 cut(s) | 4126 |
| StuI | AGGCCT | 2 cut(s) | 1301, 3110 |
| StyD4I | CCNGG | 7 cut(s) | 225, 244, 250, 1024, 1698, 2710, 3110 |
| StyI | CCWWGG | 2 cut(s) | 2648, 4183 |
| TaiI | ACGT | 3 cut(s) | 3326, 3937, 4014 |
| TaqII | GACCGA | 1 cut(s) | 2861 |
| TatI | WGTACW | 4 cut(s) | 1092, 1537, 1954, 3904 |
| TauI | GCSGC | 2 cut(s) | 1675, 1678 |
| TscAI | CASTG | 8 cut(s) | 781, 946, 1090, 2160, 2305, 3643, 3858, 4114 |
| TseFI | GTSAC | 4 cut(s) | 1308, 1499, 2842, 3426 |
| TseI | GCWGC | 6 cut(s) | 1826, 1931, 3872, 4217, 4294, 4405 |
| Tsp45I | GTSAC | 4 cut(s) | 1308, 1499, 2842, 3426 |
| TspGWI | ACGGA | 3 cut(s) | 682, 3842, 4402 |
| TspRI | CASTG | 8 cut(s) | 781, 946, 1090, 2160, 2305, 3643, 3858, 4114 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2512 |
| Vha464I | CTTAAG | 1 cut(s) | 1040 |
| VpaK11BI | GGWCC | 7 cut(s) | 211, 242, 248, 1482, 1659, 2988, 3670 |
| VspI | ATTAAT | 1 cut(s) | 2568 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1016 |
| XapI | RAATTY | 8 cut(s) | 1339, 1421, 2554, 3385, 3474, 3529, 3618, 3833 |
| XbaI | TCTAGA | 3 cut(s) | 185, 872, 1412 |
| XceI | RCATGY | 2 cut(s) | 1174, 3175 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1004, 2456 |
| XmiI | GTMKAC | 2 cut(s) | 3320, 4040 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3508, 3652 |
| ZraI | GACGTC | 1 cut(s) | 3324 |
| Zsp2I | ATGCAT | 1 cut(s) | 3995 |