Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007376

Physical Location & Seq

Genomic Coordinates Reverse (-)

59681743 .. 59683156

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCACTGAGTCCAAATCATTCGAGGACAAACTGGGTTCGAGTTTATGCTCCGACTGACTCAACTCGACCCGATTCTGAAGCGCTCAGTTTGTTTGTGCTCCACTTTCCTCTTCCCATTTCCCAGTTTACCAATCTGATCTACCCAAAGACATCATCTTTCTTCACTCAAAGCTTTACTGCCAGTAGCTCTGCAAAACCCAGTTCTCAATTCAAAGGTAAGGGCTCTCCTTTATGTCTCTCGCTCTTTGTAGACATGCAGAACGCATATATTAGCTCAAGTATATACTCATTTAGAACCAAAGGCTCTGTCTTTAATGACTACTCTTACTTGTTGAATGAAAGATTTGACAGAAACCCAATTCCTCCATCGTTAATATCAACGTCAACATCATGTTGTTGTGATTGTTGTGCATTTTCGACCCCTAGAGTGCCCATAAACCCTTGTTACTTATATGGGTTGAGGCAGTCCTCCTTGTTTCGATGGTCAGCTTCTAGAAGGTTTATCTTGGGTGGCAGGGACCGGTTTTATTACCGGGTTCAGGAATGCGGTCCGGGTCCGGGTTGTTATGAGCTGTCTTGCTCACTTAGTGAGAGGAGTGGTTACAATAGAGGAAAGGGGAGATGTGGTTGTGTGGTTGATGAGGAGGGGGAGAGTGAGGTTTGCGATTCGGATGGTTTTAGTGAAGTGGAGTCTGTGCTCAGCTTGCTGAGTGAGGAAGTGGGTGAGGAGCGTTTTGGTAGGGAGAGAAATGGGTTTAAGAGAGCAGGGCTGGAGGTGGTAGTCGGAGAAATGTGGGTTCGTCTAAGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002097 GO:0002100 GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006382 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016553 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MafB19-deam dCMP_cyt_deam_1

Protein Analysis

271

Amino Acids

30.41

Weight (kDa)

7.41

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68720
fragaria_vesca	FvH4_4g28440 FvH4_4g28440 FvH4_4g28440
malus_domestica	MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1
prunus_persica	Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1
pyrus_communis	pycom13g04440 pycom16g04480
rosa_chinensis	RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401
rosa_laevigata	RLG00000006522
rosa_multiflora	Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377560
rosa_rugosa	Rorug04G0293500
rosa_samantha	Rh4AG347800 Rh4BG356600 Rh4CG371200
rosa_wichuraiana	Rw4G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	590
AfeI	AGCGCT	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	541, 560
AgeI	ACCGGT	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	214, 337
AluBI	AGCT	6 cut(s)	174, 189, 276, 491, 574, 705
AluI	AGCT	6 cut(s)	174, 189, 276, 491, 574, 705
Alw21I	GWGCWC	2 cut(s)	102, 702
Alw26I	GTCTC	1 cut(s)	242
Aor51HI	AGCGCT	1 cut(s)	84
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AsiGI	ACCGGT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	520, 551, 557
AsuC2I	CCSGG	3 cut(s)	536, 555, 561
AsuHPI	GGTGA	1 cut(s)	737
AvaII	GGWCC	3 cut(s)	520, 551, 557
BaeGI	GKGCMC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	227
Bbv12I	GWGCWC	2 cut(s)	102, 702
BccI	CCATC	3 cut(s)	376, 477, 668
BcnI	CCSGG	3 cut(s)	536, 555, 561
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	426, 495
BfoI	RGCGCY	1 cut(s)	86
BlpI	GCTNAGC	1 cut(s)	701
Bme1390I	CCNGG	3 cut(s)	536, 555, 561
Bme18I	GGWCC	3 cut(s)	520, 551, 557
BmgT120I	GGNCC	3 cut(s)	520, 551, 557
BmiI	GGNNCC	2 cut(s)	521, 558
BmrFI	CCNGG	3 cut(s)	536, 555, 561
BmrI	ACTGGG	3 cut(s)	43, 118, 195
BmuI	ACTGGG	3 cut(s)	43, 118, 195
BpmI	CTGGAG	1 cut(s)	794
Bpu1102I	GCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	262
BpuMI	CCSGG	3 cut(s)	536, 555, 561
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 560
Bse118I	RCCGGY	1 cut(s)	522
Bse1I	ACTGG	4 cut(s)	38, 124, 183, 201
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	2 cut(s)	541, 560
BseMII	CTCAG	3 cut(s)	100, 701, 715
BseNI	ACTGG	4 cut(s)	38, 124, 183, 201
BseRI	GAGGAG	3 cut(s)	610, 659, 743
BseSI	GKGCMC	1 cut(s)	435
BshTI	ACCGGT	1 cut(s)	522
BsiHKAI	GWGCWC	2 cut(s)	102, 702
BsiSI	CCGG	4 cut(s)	523, 535, 554, 560
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	541, 560
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	551
Bsp1286I	GDGCHC	4 cut(s)	102, 227, 435, 702
Bsp143I	GATC	1 cut(s)	138
Bsp1720I	GCTNAGC	1 cut(s)	701
BspACI	CCGC	1 cut(s)	549
BspCNI	CTCAG	3 cut(s)	99, 702, 714
BspLI	GGNNCC	2 cut(s)	521, 558
BsrFI	RCCGGY	1 cut(s)	522
BsrI	ACTGG	4 cut(s)	38, 124, 183, 201
BssAI	RCCGGY	1 cut(s)	522
BssMI	GATC	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	707
BstDEI	CTNAG	6 cut(s)	8, 86, 587, 701, 710, 806
BstF5I	GGATG	1 cut(s)	679
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	706
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	534, 553, 559
BstSLI	GKGCMC	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	707
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	522
Cfr13I	GGNCC	3 cut(s)	520, 551, 557
CpoI	CGGWCCG	1 cut(s)	551
CspAI	ACCGGT	1 cut(s)	522
CspI	CGGWCCG	1 cut(s)	551
CviAII	CATG	2 cut(s)	256, 393
CviJI	RGCY	9 cut(s)	174, 189, 225, 276, 306, 491, 574, 705, 772
CviKI_1	RGCY	9 cut(s)	174, 189, 225, 276, 306, 491, 574, 705, 772
DdeI	CTNAG	6 cut(s)	8, 86, 587, 701, 710, 806
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
DraIII	CACNNNGTG	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	3 cut(s)	520, 551, 557
Eco47III	AGCGCT	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	2 cut(s)	259, 396
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	2 cut(s)	255, 392
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	1 cut(s)	227
FspBI	CTAG	2 cut(s)	426, 495
GlaI	GCGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	794
HaeII	RGCGCY	1 cut(s)	86
HapII	CCGG	4 cut(s)	523, 535, 554, 560
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	259, 396
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	5 cut(s)	10, 59, 74, 668, 692
HpaII	CCGG	4 cut(s)	523, 535, 554, 560
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	3 cut(s)	129, 253, 387
Hpy188I	TCNGA	5 cut(s)	54, 79, 138, 673, 788
Hpy188III	TCNNGA	2 cut(s)	495, 542
Hpy8I	GTNNAC	3 cut(s)	129, 253, 387
HpyAV	CCTTC	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	3 cut(s)	194, 259, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	706
HpyF3I	CTNAG	6 cut(s)	8, 86, 587, 701, 710, 806
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	259, 396
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	3 cut(s)	55, 105, 730
MaeI	CTAG	2 cut(s)	426, 495
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	2 cut(s)	446, 602
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	2 cut(s)	104, 154
MhlI	GDGCHC	4 cut(s)	102, 227, 435, 702
MluCI	AATT	2 cut(s)	209, 360
MlyI	GAGTC	3 cut(s)	19, 53, 701
MmeI	TCCRAC	2 cut(s)	77, 766
MseI	TTAA	3 cut(s)	315, 374, 759
MspI	CCGG	4 cut(s)	523, 535, 554, 560
MspR9I	CCNGG	3 cut(s)	536, 555, 561
Mva1269I	GAATGC	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	706
NciI	CCSGG	3 cut(s)	536, 555, 561
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	2 cut(s)	259, 396
NlaIV	GGNNCC	2 cut(s)	521, 558
NspI	RCATGY	1 cut(s)	259
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	2 cut(s)	74, 668
PinAI	ACCGGT	1 cut(s)	522
PleI	GAGTC	3 cut(s)	18, 53, 700
PpsI	GAGTC	3 cut(s)	18, 53, 700
PspN4I	GGNNCC	2 cut(s)	521, 558
PspPI	GGNCC	3 cut(s)	520, 551, 557
Rsr2I	CGGWCCG	1 cut(s)	551
RsrII	CGGWCCG	1 cut(s)	551
SaqAI	TTAA	3 cut(s)	315, 374, 759
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	3 cut(s)	520, 551, 557
SchI	GAGTC	3 cut(s)	19, 53, 701
ScrFI	CCNGG	3 cut(s)	536, 555, 561
SduI	GDGCHC	4 cut(s)	102, 227, 435, 702
SinI	GGWCC	3 cut(s)	520, 551, 557
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	2 cut(s)	209, 360
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	2 cut(s)	426, 495
StyD4I	CCNGG	3 cut(s)	534, 553, 559
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	5 cut(s)	23, 40, 67, 419, 481
TasI	AATT	2 cut(s)	209, 360
TfiI	GAWTC	2 cut(s)	74, 668
Tru1I	TTAA	3 cut(s)	315, 374, 759
Tru9I	TTAA	3 cut(s)	315, 374, 759
TscAI	CASTG	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	3 cut(s)	520, 551, 557
XbaI	TCTAGA	1 cut(s)	494
XceI	RCATGY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	426, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.