tRNA(Adenine(34)) deaminase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68720 |
| fragaria_vesca | FvH4_4g28440 FvH4_4g28440 FvH4_4g28440 |
| malus_domestica | MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1 |
| prunus_persica | Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 |
| pyrus_communis | pycom13g04440 pycom16g04480 |
| rosa_chinensis | RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401 |
| rosa_laevigata | RLG00000006522 |
| rosa_multiflora | Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00377560 |
| rosa_rugosa | Rorug04G0293500 |
| rosa_samantha | Rh4AG347800 Rh4BG356600 Rh4CG371200 |
| rosa_wichuraiana | Rw4G030410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3299 |
| Acc16I | TGCGCA | 1 cut(s) | 4255 |
| Acc36I | ACCTGC | 1 cut(s) | 2949 |
| AccB1I | GGYRCC | 2 cut(s) | 2122, 2680 |
| AccI | GTMKAC | 2 cut(s) | 3293, 4013 |
| AccII | CGCG | 2 cut(s) | 4146, 4360 |
| AccIII | TCCGGA | 1 cut(s) | 2014 |
| AclI | AACGTT | 1 cut(s) | 3984 |
| AclWI | GGATC | 1 cut(s) | 2170 |
| AcoI | YGGCCR | 2 cut(s) | 1546, 3094 |
| AcsI | RAATTY | 7 cut(s) | 1312, 1394, 3358, 3447, 3502, 3591, 3806 |
| AcuI | CTGAAG | 8 cut(s) | 924, 2205, 2331, 2568, 2664, 2688, 2751, 2781 |
| AcvI | CACGTG | 1 cut(s) | 3908 |
| AcyI | GRCGYC | 1 cut(s) | 3296 |
| AdeI | CACNNNGTG | 1 cut(s) | 335 |
| AfaI | GTAC | 5 cut(s) | 776, 1067, 1512, 1929, 3879 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 286, 305, 991, 1495, 1641, 1644 |
| AflII | CTTAAG | 1 cut(s) | 1013 |
| AgeI | ACCGGT | 1 cut(s) | 267 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3336 |
| AhlI | ACTAGT | 1 cut(s) | 2873 |
| AjnI | CCWGG | 4 cut(s) | 298, 997, 2683, 3083 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 892, 924 |
| Alw21I | GWGCWC | 1 cut(s) | 4099 |
| AlwI | GGATC | 1 cut(s) | 2170 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3602 |
| Ama87I | CYCGRG | 1 cut(s) | 2026 |
| Aor13HI | TCCGGA | 1 cut(s) | 2014 |
| ApeKI | GCWGC | 7 cut(s) | 1799, 1904, 2743, 3845, 4190, 4267, 4378 |
| ApoI | RAATTY | 7 cut(s) | 1312, 1394, 3358, 3447, 3502, 3591, 3806 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 39, 71, 2467, 2499 |
| AseI | ATTAAT | 1 cut(s) | 2541 |
| AsiGI | ACCGGT | 1 cut(s) | 267 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3481, 3625 |
| AspLEI | GCGC | 1 cut(s) | 4256 |
| AsuC2I | CCSGG | 2 cut(s) | 281, 306 |
| AsuHPI | GGTGA | 6 cut(s) | 482, 2468, 2702, 3056, 3335, 4343 |
| AvaI | CYCGRG | 1 cut(s) | 2026 |
| AvaII | GGWCC | 7 cut(s) | 265, 296, 302, 1455, 1632, 2961, 3643 |
| AxyI | CCTNAGG | 1 cut(s) | 2844 |
| BaeGI | GKGCMC | 1 cut(s) | 180 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1986, 2019 |
| BalI | TGGCCA | 1 cut(s) | 1548 |
| BanI | GGYRCC | 2 cut(s) | 2122, 2680 |
| BanII | GRGCYC | 1 cut(s) | 4099 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1995, 2027, 3250, 3282 |
| BbrPI | CACGTG | 1 cut(s) | 3908 |
| BbsI | GAAGAC | 4 cut(s) | 930, 1253, 2739, 3309 |
| Bbv12I | GWGCWC | 1 cut(s) | 4099 |
| BbvCI | CCTCAGC | 2 cut(s) | 1089, 2996 |
| BbvI | GCAGC | 7 cut(s) | 1786, 1891, 2730, 3832, 4177, 4279, 4365 |
| BceAI | ACGGC | 2 cut(s) | 2924, 3081 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 688, 722, 4314, 4348 |
| BciT130I | CCWGG | 4 cut(s) | 300, 999, 2685, 3085 |
| BciVI | GTATCC | 1 cut(s) | 3585 |
| BclI | TGATCA | 1 cut(s) | 3166 |
| BcnI | CCSGG | 2 cut(s) | 281, 306 |
| BcuI | ACTAGT | 1 cut(s) | 2873 |
| BfmI | CTRYAG | 3 cut(s) | 1125, 2744, 2895 |
| BfrI | CTTAAG | 1 cut(s) | 1013 |
| BfuAI | ACCTGC | 1 cut(s) | 2949 |
| BfuI | GTATCC | 1 cut(s) | 3585 |
| BisI | GCNGC | 9 cut(s) | 1646, 1649, 1800, 1905, 2744, 3846, 4191, 4268, 4379 |
| BlpI | GCTNAGC | 2 cut(s) | 446, 2568 |
| BlsI | GCNGC | 9 cut(s) | 1647, 1650, 1801, 1906, 2745, 3847, 4192, 4269, 4380 |
| Bme1390I | CCNGG | 6 cut(s) | 281, 300, 306, 999, 2685, 3085 |
| Bme18I | GGWCC | 7 cut(s) | 265, 296, 302, 1455, 1632, 2961, 3643 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3336 |
| BmeT110I | CYCGRG | 1 cut(s) | 2026 |
| BmrFI | CCNGG | 6 cut(s) | 281, 300, 306, 999, 2685, 3085 |
| BmsI | GCATC | 7 cut(s) | 1075, 1217, 1426, 1786, 2305, 2542, 4253 |
| BpiI | GAAGAC | 4 cut(s) | 930, 1253, 2739, 3309 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3146, 3178 |
| BpmI | CTGGAG | 7 cut(s) | 539, 2232, 2265, 2454, 2706, 2793, 4074 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1089, 2996 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 446, 2568 |
| BpuEI | CTTGAG | 4 cut(s) | 7, 1579, 1943, 2502 |
| BpuMI | CCSGG | 2 cut(s) | 281, 306 |
| BsaAI | YACGTR | 1 cut(s) | 3908 |
| BsaBI | GATNNNNATC | 1 cut(s) | 811 |
| BsaHI | GRCGYC | 1 cut(s) | 3296 |
| BsaI | GGTCTC | 3 cut(s) | 1511, 3011, 3149 |
| BsaJI | CCNNGG | 3 cut(s) | 3364, 4156, 4358 |
| BsaWI | WCCGGW | 2 cut(s) | 267, 2014 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 286, 305, 991, 1495, 1641, 1644 |
| Bse118I | RCCGGY | 2 cut(s) | 267, 2954 |
| Bse1I | ACTGG | 6 cut(s) | 912, 1549, 2755, 3607, 3885, 4196 |
| Bse21I | CCTNAGG | 1 cut(s) | 2844 |
| Bse3DI | GCAATG | 1 cut(s) | 1448 |
| Bse8I | GATNNNNATC | 1 cut(s) | 811 |
| BseAI | TCCGGA | 1 cut(s) | 2014 |
| BseBI | CCWGG | 4 cut(s) | 300, 999, 2685, 3085 |
| BseDI | CCNNGG | 3 cut(s) | 3364, 4156, 4358 |
| BseGI | GGATG | 8 cut(s) | 424, 1581, 2098, 2489, 2818, 2825, 4224, 4354 |
| BseJI | GATNNNNATC | 1 cut(s) | 811 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 286, 305, 991, 1495, 1641, 1644 |
| BseMI | GCAATG | 1 cut(s) | 1448 |
| BseNI | ACTGG | 6 cut(s) | 912, 1549, 2755, 3607, 3885, 4196 |
| BseRI | GAGGAG | 8 cut(s) | 355, 488, 544, 589, 646, 3122, 3341, 3647 |
| BseSI | GKGCMC | 1 cut(s) | 180 |
| BseXI | GCAGC | 7 cut(s) | 1786, 1891, 2730, 3832, 4177, 4279, 4365 |
| BsgI | GTGCAG | 2 cut(s) | 3717, 4176 |
| Bsh1236I | CGCG | 2 cut(s) | 4146, 4360 |
| BshNI | GGYRCC | 2 cut(s) | 2122, 2680 |
| BshTI | ACCGGT | 1 cut(s) | 267 |
| BsiHKAI | GWGCWC | 1 cut(s) | 4099 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2026 |
| BsiSI | CCGG | 6 cut(s) | 268, 280, 305, 2015, 2413, 2955 |
| BslFI | GGGAC | 6 cut(s) | 278, 879, 1441, 1726, 3656, 4321 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 286, 305, 991, 1495, 1641, 1644 |
| BsmBI | CGTCTC | 2 cut(s) | 854, 1459 |
| BsmFI | GGGAC | 6 cut(s) | 278, 879, 1441, 1726, 3656, 4321 |
| BsmI | GAATGC | 6 cut(s) | 296, 1231, 2085, 2941, 3381, 3525 |
| Bso31I | GGTCTC | 3 cut(s) | 1511, 3011, 3149 |
| BsoBI | CYCGRG | 1 cut(s) | 2026 |
| Bsp1286I | GDGCHC | 2 cut(s) | 180, 4099 |
| Bsp13I | TCCGGA | 1 cut(s) | 2014 |
| Bsp143I | GATC | 4 cut(s) | 1720, 1750, 2162, 3166 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 446, 2568 |
| Bsp68I | TCGCGA | 1 cut(s) | 4146 |
| BspEI | TCCGGA | 1 cut(s) | 2014 |
| BspFNI | CGCG | 2 cut(s) | 4146, 4360 |
| BspMAI | CTGCAG | 2 cut(s) | 1129, 2748 |
| BspMI | ACCTGC | 1 cut(s) | 2949 |
| BspPI | GGATC | 1 cut(s) | 2170 |
| BspT107I | GGYRCC | 2 cut(s) | 2122, 2680 |
| BspTI | CTTAAG | 1 cut(s) | 1013 |
| BspTNI | GGTCTC | 3 cut(s) | 1511, 3011, 3149 |
| BsrDI | GCAATG | 1 cut(s) | 1448 |
| BsrFI | RCCGGY | 2 cut(s) | 267, 2954 |
| BsrI | ACTGG | 6 cut(s) | 912, 1549, 2755, 3607, 3885, 4196 |
| BssAI | RCCGGY | 2 cut(s) | 267, 2954 |
| BssECI | CCNNGG | 3 cut(s) | 3364, 4156, 4358 |
| BssMI | GATC | 4 cut(s) | 1720, 1750, 2162, 3166 |
| BssNI | GRCGYC | 1 cut(s) | 3296 |
| BssT1I | CCWWGG | 1 cut(s) | 4156 |
| Bst2UI | CCWGG | 4 cut(s) | 300, 999, 2685, 3085 |
| Bst6I | CTCTTC | 7 cut(s) | 555, 608, 670, 852, 1056, 2016, 3666 |
| BstACI | GRCGYC | 1 cut(s) | 3296 |
| BstAFI | CTTAAG | 1 cut(s) | 1013 |
| BstBAI | YACGTR | 1 cut(s) | 3908 |
| BstC8I | GCNNGC | 7 cut(s) | 452, 2170, 3146, 4005, 4188, 4311, 4315 |
| BstDSI | CCRYGG | 1 cut(s) | 4358 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 989 |
| BstF5I | GGATG | 8 cut(s) | 424, 1581, 2098, 2489, 2818, 2825, 4224, 4354 |
| BstFNI | CGCG | 2 cut(s) | 4146, 4360 |
| BstHHI | GCGC | 1 cut(s) | 4256 |
| BstKTI | GATC | 4 cut(s) | 1723, 1753, 2165, 3169 |
| BstMBI | GATC | 4 cut(s) | 1720, 1750, 2162, 3166 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 451, 1133, 2897, 3464, 3842, 4152 |
| BstNI | CCWGG | 4 cut(s) | 300, 999, 2685, 3085 |
| BstNSI | RCATGY | 2 cut(s) | 1147, 3148 |
| BstSCI | CCNGG | 6 cut(s) | 279, 298, 304, 997, 2683, 3083 |
| BstSFI | CTRYAG | 3 cut(s) | 1125, 2744, 2895 |
| BstSLI | GKGCMC | 1 cut(s) | 180 |
| BstUI | CGCG | 2 cut(s) | 4146, 4360 |
| BstV1I | GCAGC | 7 cut(s) | 1786, 1891, 2730, 3832, 4177, 4279, 4365 |
| BstV2I | GAAGAC | 4 cut(s) | 930, 1253, 2739, 3309 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3029 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2844 |
| BsuI | GTATCC | 1 cut(s) | 3585 |
| BtgI | CCRYGG | 1 cut(s) | 4358 |
| BtgZI | GCGATG | 1 cut(s) | 4161 |
| BtsCI | GGATG | 8 cut(s) | 424, 1581, 2098, 2489, 2818, 2825, 4224, 4354 |
| BtsI | GCAGTG | 2 cut(s) | 754, 3824 |
| BtsIMutI | CAGTG | 9 cut(s) | 754, 919, 1063, 2126, 2271, 3600, 3609, 3824, 4080 |
| BtuMI | TCGCGA | 1 cut(s) | 4146 |
| BveI | ACCTGC | 1 cut(s) | 2949 |
| Cac8I | GCNNGC | 7 cut(s) | 452, 2170, 3146, 4005, 4188, 4311, 4315 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3602 |
| CfoI | GCGC | 1 cut(s) | 4256 |
| Cfr10I | RCCGGY | 2 cut(s) | 267, 2954 |
| Cfr42I | CCGCGG | 1 cut(s) | 4361 |
| CsiI | ACCWGGT | 1 cut(s) | 997 |
| Csp6I | GTAC | 5 cut(s) | 775, 1066, 1511, 1928, 3878 |
| CspAI | ACCGGT | 1 cut(s) | 267 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3261, 3296 |
| CviQI | GTAC | 5 cut(s) | 775, 1066, 1511, 1928, 3878 |
| DpnI | GATC | 4 cut(s) | 1722, 1752, 2164, 3168 |
| DpnII | GATC | 4 cut(s) | 1720, 1750, 2162, 3166 |
| DraIII | CACNNNGTG | 1 cut(s) | 335 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3336 |
| EaeI | YGGCCR | 2 cut(s) | 1546, 3094 |
| Eam1104I | CTCTTC | 7 cut(s) | 555, 608, 670, 852, 1056, 2016, 3666 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3336 |
| EarI | CTCTTC | 7 cut(s) | 555, 608, 670, 852, 1056, 2016, 3666 |
| EciI | GGCGGA | 1 cut(s) | 2672 |
| Ecl136II | GAGCTC | 1 cut(s) | 4097 |
| Eco130I | CCWWGG | 1 cut(s) | 4156 |
| Eco147I | AGGCCT | 2 cut(s) | 1274, 3083 |
| Eco24I | GRGCYC | 1 cut(s) | 4099 |
| Eco31I | GGTCTC | 3 cut(s) | 1511, 3011, 3149 |
| Eco32I | GATATC | 1 cut(s) | 3245 |
| Eco47I | GGWCC | 7 cut(s) | 265, 296, 302, 1455, 1632, 2961, 3643 |
| Eco53kI | GAGCTC | 1 cut(s) | 4097 |
| Eco57I | CTGAAG | 8 cut(s) | 924, 2205, 2331, 2568, 2664, 2688, 2751, 2781 |
| Eco72I | CACGTG | 1 cut(s) | 3908 |
| Eco81I | CCTNAGG | 1 cut(s) | 2844 |
| Eco88I | CYCGRG | 1 cut(s) | 2026 |
| EcoICRI | GAGCTC | 1 cut(s) | 4097 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 989 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1632, 2792 |
| EcoRI | GAATTC | 1 cut(s) | 1312 |
| EcoRII | CCWGG | 4 cut(s) | 298, 997, 2683, 3083 |
| EcoRV | GATATC | 1 cut(s) | 3245 |
| EcoT14I | CCWWGG | 1 cut(s) | 4156 |
| EcoT22I | ATGCAT | 1 cut(s) | 3968 |
| EcoT38I | GRGCYC | 1 cut(s) | 4099 |
| ErhI | CCWWGG | 1 cut(s) | 4156 |
| Esp3I | CGTCTC | 2 cut(s) | 854, 1459 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3813, 3845 |
| FaqI | GGGAC | 6 cut(s) | 278, 879, 1441, 1726, 3656, 4321 |
| FauI | CCCGC | 1 cut(s) | 1129 |
| FauNDI | CATATG | 1 cut(s) | 2966 |
| FbaI | TGATCA | 1 cut(s) | 3166 |
| FblI | GTMKAC | 2 cut(s) | 3293, 4013 |
| Fnu4HI | GCNGC | 9 cut(s) | 1646, 1649, 1800, 1905, 2744, 3846, 4191, 4268, 4379 |
| FokI | GGATG | 8 cut(s) | 431, 1568, 2105, 2476, 2812, 2825, 4211, 4341 |
| FriOI | GRGCYC | 1 cut(s) | 4099 |
| Fsp4HI | GCNGC | 9 cut(s) | 1646, 1649, 1800, 1905, 2744, 3846, 4191, 4268, 4379 |
| FspI | TGCGCA | 1 cut(s) | 4255 |
| GlaI | GCGC | 1 cut(s) | 4255 |
| GluI | GCNGC | 9 cut(s) | 1646, 1649, 1800, 1905, 2744, 3846, 4191, 4268, 4379 |
| GsuI | CTGGAG | 7 cut(s) | 539, 2232, 2265, 2454, 2706, 2793, 4074 |
| HapII | CCGG | 6 cut(s) | 268, 280, 305, 2015, 2413, 2955 |
| HhaI | GCGC | 1 cut(s) | 4256 |
| Hin1I | GRCGYC | 1 cut(s) | 3296 |
| Hin6I | GCGC | 1 cut(s) | 4254 |
| HinP1I | GCGC | 1 cut(s) | 4254 |
| HincII | GTYRAC | 3 cut(s) | 132, 3294, 4078 |
| HindII | GTYRAC | 3 cut(s) | 132, 3294, 4078 |
| HindIII | AAGCTT | 3 cut(s) | 1175, 3716, 4106 |
| HpaII | CCGG | 6 cut(s) | 268, 280, 305, 2015, 2413, 2955 |
| HphI | GGTGA | 6 cut(s) | 482, 2468, 2702, 3056, 3335, 4343 |
| Hpy166II | GTNNAC | 6 cut(s) | 132, 2117, 3294, 4014, 4078, 4201 |
| Hpy8I | GTNNAC | 6 cut(s) | 132, 2117, 3294, 4014, 4078, 4201 |
| Hpy99I | CGWCG | 2 cut(s) | 3298, 4233 |
| HpyCH4IV | ACGT | 4 cut(s) | 128, 3296, 3907, 3984 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 451, 1133, 2897, 3464, 3842, 4152 |
| HpySE526I | ACGT | 4 cut(s) | 128, 3296, 3907, 3984 |
| Hsp92I | GRCGYC | 1 cut(s) | 3296 |
| HspAI | GCGC | 1 cut(s) | 4254 |
| Kpn2I | TCCGGA | 1 cut(s) | 2014 |
| Ksp22I | TGATCA | 1 cut(s) | 3166 |
| KspI | CCGCGG | 1 cut(s) | 4361 |
| Kzo9I | GATC | 4 cut(s) | 1720, 1750, 2162, 3166 |
| LmnI | GCTCC | 7 cut(s) | 475, 2435, 4055, 4094, 4102, 4115, 4125 |
| Lsp1109I | GCAGC | 7 cut(s) | 1786, 1891, 2730, 3832, 4177, 4279, 4365 |
| LweI | GCATC | 7 cut(s) | 1075, 1217, 1426, 1786, 2305, 2542, 4253 |
| MabI | ACCWGGT | 1 cut(s) | 997 |
| MaeII | ACGT | 4 cut(s) | 128, 3296, 3907, 3984 |
| MalI | GATC | 4 cut(s) | 1722, 1752, 2164, 3168 |
| MboI | GATC | 4 cut(s) | 1720, 1750, 2162, 3166 |
| MfeI | CAATTG | 1 cut(s) | 2147 |
| MhlI | GDGCHC | 2 cut(s) | 180, 4099 |
| MlsI | TGGCCA | 1 cut(s) | 1548 |
| MluNI | TGGCCA | 1 cut(s) | 1548 |
| MmeI | TCCRAC | 3 cut(s) | 2319, 4149, 4252 |
| Mox20I | TGGCCA | 1 cut(s) | 1548 |
| Mph1103I | ATGCAT | 1 cut(s) | 3968 |
| MroI | TCCGGA | 1 cut(s) | 2014 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3481, 3625 |
| MscI | TGGCCA | 1 cut(s) | 1548 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1688, 1824, 3030, 4249 |
| Msp20I | TGGCCA | 1 cut(s) | 1548 |
| MspA1I | CMGCKG | 5 cut(s) | 2496, 2743, 4190, 4282, 4360 |
| MspCI | CTTAAG | 1 cut(s) | 1013 |
| MspI | CCGG | 6 cut(s) | 268, 280, 305, 2015, 2413, 2955 |
| MspR9I | CCNGG | 6 cut(s) | 281, 300, 306, 999, 2685, 3085 |
| MunI | CAATTG | 1 cut(s) | 2147 |
| Mva1269I | GAATGC | 6 cut(s) | 296, 1231, 2085, 2941, 3381, 3525 |
| MvaI | CCWGG | 4 cut(s) | 300, 999, 2685, 3085 |
| MvnI | CGCG | 2 cut(s) | 4146, 4360 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 451, 1133, 2897, 3464, 3842, 4152 |
| NciI | CCSGG | 2 cut(s) | 281, 306 |
| NdeI | CATATG | 1 cut(s) | 2966 |
| NdeII | GATC | 4 cut(s) | 1720, 1750, 2162, 3166 |
| NmuCI | GTSAC | 4 cut(s) | 1281, 1472, 2815, 3399 |
| NruI | TCGCGA | 1 cut(s) | 4146 |
| NsbI | TGCGCA | 1 cut(s) | 4255 |
| NsiI | ATGCAT | 1 cut(s) | 3968 |
| NspI | RCATGY | 2 cut(s) | 1147, 3148 |
| PaeI | GCATGC | 1 cut(s) | 3148 |
| PceI | AGGCCT | 2 cut(s) | 1274, 3083 |
| PctI | GAATGC | 6 cut(s) | 296, 1231, 2085, 2941, 3381, 3525 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3481, 3625 |
| PflFI | GACNNNGTC | 1 cut(s) | 2485 |
| PinAI | ACCGGT | 1 cut(s) | 267 |
| PkrI | GCNGC | 9 cut(s) | 1647, 1650, 1801, 1906, 2745, 3847, 4192, 4269, 4380 |
| PmaCI | CACGTG | 1 cut(s) | 3908 |
| PmlI | CACGTG | 1 cut(s) | 3908 |
| Ppu21I | YACGTR | 1 cut(s) | 3908 |
| PpuMI | RGGWCCY | 1 cut(s) | 1632 |
| PshBI | ATTAAT | 1 cut(s) | 2541 |
| Psp124BI | GAGCTC | 1 cut(s) | 4099 |
| Psp1406I | AACGTT | 1 cut(s) | 3984 |
| Psp5II | RGGWCCY | 1 cut(s) | 1632 |
| Psp6I | CCWGG | 4 cut(s) | 298, 997, 2683, 3083 |
| PspCI | CACGTG | 1 cut(s) | 3908 |
| PspGI | CCWGG | 4 cut(s) | 298, 997, 2683, 3083 |
| PspPPI | RGGWCCY | 1 cut(s) | 1632 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1473, 1505 |
| PstI | CTGCAG | 2 cut(s) | 1129, 2748 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3602 |
| PsyI | GACNNNGTC | 1 cut(s) | 2485 |
| PvuII | CAGCTG | 3 cut(s) | 2743, 4190, 4282 |
| RruI | TCGCGA | 1 cut(s) | 4146 |
| RsaI | GTAC | 5 cut(s) | 776, 1067, 1512, 1929, 3879 |
| RsaNI | GTAC | 5 cut(s) | 775, 1066, 1511, 1928, 3878 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1688, 1824, 3030, 4249 |
| SacI | GAGCTC | 1 cut(s) | 4099 |
| SacII | CCGCGG | 1 cut(s) | 4361 |
| SalI | GTCGAC | 1 cut(s) | 3292 |
| SatI | GCNGC | 9 cut(s) | 1646, 1649, 1800, 1905, 2744, 3846, 4191, 4268, 4379 |
| Sau3AI | GATC | 4 cut(s) | 1720, 1750, 2162, 3166 |
| ScrFI | CCNGG | 6 cut(s) | 281, 300, 306, 999, 2685, 3085 |
| SduI | GDGCHC | 2 cut(s) | 180, 4099 |
| SexAI | ACCWGGT | 1 cut(s) | 997 |
| SfaNI | GCATC | 7 cut(s) | 1075, 1217, 1426, 1786, 2305, 2542, 4253 |
| SfcI | CTRYAG | 3 cut(s) | 1125, 2744, 2895 |
| Sfr303I | CCGCGG | 1 cut(s) | 4361 |
| SgrBI | CCGCGG | 1 cut(s) | 4361 |
| SinI | GGWCC | 7 cut(s) | 265, 296, 302, 1455, 1632, 2961, 3643 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1688, 1824, 3030, 4249 |
| SmlI | CTYRAG | 5 cut(s) | 22, 1013, 1594, 1958, 2517 |
| SmoI | CTYRAG | 5 cut(s) | 22, 1013, 1594, 1958, 2517 |
| SpeI | ACTAGT | 1 cut(s) | 2873 |
| SphI | GCATGC | 1 cut(s) | 3148 |
| SseBI | AGGCCT | 2 cut(s) | 1274, 3083 |
| SspI | AATATT | 1 cut(s) | 1576 |
| SstI | GAGCTC | 1 cut(s) | 4099 |
| StuI | AGGCCT | 2 cut(s) | 1274, 3083 |
| StyD4I | CCNGG | 6 cut(s) | 279, 298, 304, 997, 2683, 3083 |
| StyI | CCWWGG | 1 cut(s) | 4156 |
| TaiI | ACGT | 4 cut(s) | 131, 3299, 3910, 3987 |
| TaqI | TCGA | 9 cut(s) | 164, 226, 611, 698, 825, 1109, 2183, 2301, 3293 |
| TaqII | GACCGA | 1 cut(s) | 2834 |
| TatI | WGTACW | 4 cut(s) | 1065, 1510, 1927, 3877 |
| TauI | GCSGC | 2 cut(s) | 1648, 1651 |
| TscAI | CASTG | 9 cut(s) | 754, 919, 1063, 2133, 2278, 3607, 3616, 3831, 4087 |
| TseFI | GTSAC | 4 cut(s) | 1281, 1472, 2815, 3399 |
| TseI | GCWGC | 7 cut(s) | 1799, 1904, 2743, 3845, 4190, 4267, 4378 |
| Tsp45I | GTSAC | 4 cut(s) | 1281, 1472, 2815, 3399 |
| TspRI | CASTG | 9 cut(s) | 754, 919, 1063, 2133, 2278, 3607, 3616, 3831, 4087 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2485 |
| Vha464I | CTTAAG | 1 cut(s) | 1013 |
| VpaK11BI | GGWCC | 7 cut(s) | 265, 296, 302, 1455, 1632, 2961, 3643 |
| VspI | ATTAAT | 1 cut(s) | 2541 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 989 |
| XapI | RAATTY | 7 cut(s) | 1312, 1394, 3358, 3447, 3502, 3591, 3806 |
| XbaI | TCTAGA | 3 cut(s) | 239, 845, 1385 |
| XceI | RCATGY | 2 cut(s) | 1147, 3148 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 977, 2429 |
| XmiI | GTMKAC | 2 cut(s) | 3293, 4013 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3481, 3625 |
| ZraI | GACGTC | 1 cut(s) | 3297 |
| Zsp2I | ATGCAT | 1 cut(s) | 3968 |