tRNA(Adenine(34)) deaminase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68720 |
| fragaria_vesca | FvH4_4g28440 FvH4_4g28440 FvH4_4g28440 |
| malus_domestica | MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1 |
| prunus_persica | Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 |
| pyrus_communis | pycom13g04440 pycom16g04480 |
| rosa_chinensis | RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401 |
| rosa_laevigata | RLG00000006522 |
| rosa_multiflora | Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00377560 |
| rosa_rugosa | Rorug04G0293500 |
| rosa_samantha | Rh4AG347800 Rh4BG356600 Rh4CG371200 |
| rosa_wichuraiana | Rw4G030410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 2321, 2396 |
| Acc36I | ACCTGC | 3 cut(s) | 1189, 1888, 3024 |
| Acc65I | GGTACC | 1 cut(s) | 3766 |
| AccB1I | GGYRCC | 1 cut(s) | 3766 |
| AccIII | TCCGGA | 1 cut(s) | 2111 |
| AclWI | GGATC | 5 cut(s) | 964, 1422, 1435, 1790, 2320 |
| AcoI | YGGCCR | 2 cut(s) | 571, 3169 |
| AcsI | RAATTY | 8 cut(s) | 170, 1169, 1547, 1852, 2103, 2367, 3492, 4248 |
| AcuI | CTGAAG | 9 cut(s) | 1068, 1362, 1965, 2081, 2382, 2514, 2694, 2817, 2880 |
| AcvI | CACGTG | 1 cut(s) | 3812 |
| AfaI | GTAC | 6 cut(s) | 852, 925, 1157, 3634, 3768, 3789 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 317, 1135, 3260, 4055 |
| AgeI | ACCGGT | 1 cut(s) | 279 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2756 |
| AjiI | CACGTC | 3 cut(s) | 1873, 2212, 4136 |
| AjnI | CCWGG | 2 cut(s) | 1608, 2016 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 115, 147 |
| Alw21I | GWGCWC | 2 cut(s) | 2736, 4096 |
| AlwI | GGATC | 5 cut(s) | 964, 1422, 1435, 1790, 2320 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2795 |
| Ama87I | CYCGRG | 2 cut(s) | 1918, 2176 |
| Aor13HI | TCCGGA | 1 cut(s) | 2111 |
| AoxI | GGCC | 9 cut(s) | 308, 571, 1126, 1419, 1891, 1980, 2163, 2921, 3169 |
| ApeKI | GCWGC | 7 cut(s) | 2317, 3232, 3749, 4029, 4171, 4223, 4226 |
| ApoI | RAATTY | 8 cut(s) | 170, 1169, 1547, 1852, 2103, 2367, 3492, 4248 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1832, 1864 |
| AsiGI | ACCGGT | 1 cut(s) | 279 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2367, 3127, 3729 |
| Asp718I | GGTACC | 1 cut(s) | 3766 |
| AspLEI | GCGC | 6 cut(s) | 948, 2139, 2322, 2397, 3540, 4231 |
| AspS9I | GGNCC | 6 cut(s) | 277, 1980, 2164, 2921, 3036, 3544 |
| AsuC2I | CCSGG | 1 cut(s) | 4220 |
| AsuHPI | GGTGA | 8 cut(s) | 455, 506, 931, 1037, 1100, 2687, 2831, 4070 |
| AsuII | TTCGAA | 1 cut(s) | 941 |
| AvaI | CYCGRG | 2 cut(s) | 1918, 2176 |
| AvaII | GGWCC | 3 cut(s) | 277, 3036, 3544 |
| BaeGI | GKGCMC | 2 cut(s) | 192, 3947 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1932, 1965 |
| BalI | TGGCCA | 1 cut(s) | 3171 |
| BamHI | GGATCC | 1 cut(s) | 1427 |
| BanI | GGYRCC | 1 cut(s) | 3766 |
| BanII | GRGCYC | 5 cut(s) | 333, 2736, 3098, 4003, 4096 |
| BauI | CACGAG | 1 cut(s) | 2887 |
| BbrPI | CACGTG | 1 cut(s) | 3812 |
| BbsI | GAAGAC | 3 cut(s) | 1316, 1400, 2868 |
| Bbv12I | GWGCWC | 2 cut(s) | 2736, 4096 |
| BbvCI | CCTCAGC | 2 cut(s) | 3071, 4187 |
| BbvI | GCAGC | 7 cut(s) | 2304, 3219, 3736, 4041, 4183, 4235, 4238 |
| BccI | CCATC | 7 cut(s) | 404, 1187, 1274, 4019, 4046, 4266, 4270 |
| BceAI | ACGGC | 3 cut(s) | 1363, 2358, 2999 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4226, 4260 |
| BciT130I | CCWGG | 2 cut(s) | 1610, 2018 |
| BclI | TGATCA | 1 cut(s) | 1447 |
| BcnI | CCSGG | 1 cut(s) | 4220 |
| BfmI | CTRYAG | 3 cut(s) | 1272, 2901, 2925 |
| BfoI | RGCGCY | 2 cut(s) | 949, 4232 |
| BfuAI | ACCTGC | 3 cut(s) | 1189, 1888, 3024 |
| BglII | AGATCT | 1 cut(s) | 3377 |
| BisI | GCNGC | 7 cut(s) | 2318, 3233, 3750, 4030, 4172, 4224, 4227 |
| BlpI | GCTNAGC | 1 cut(s) | 470 |
| BlsI | GCNGC | 7 cut(s) | 2319, 3234, 3751, 4031, 4173, 4225, 4228 |
| BmcAI | AGTACT | 1 cut(s) | 925 |
| Bme1390I | CCNGG | 3 cut(s) | 1610, 2018, 4220 |
| Bme18I | GGWCC | 3 cut(s) | 277, 3036, 3544 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2756 |
| BmeT110I | CYCGRG | 2 cut(s) | 1918, 2176 |
| BmgBI | CACGTC | 3 cut(s) | 1873, 2212, 4136 |
| BmgT120I | GGNCC | 6 cut(s) | 277, 1980, 2164, 2921, 3036, 3544 |
| BmrFI | CCNGG | 3 cut(s) | 1610, 2018, 4220 |
| BmrI | ACTGGG | 1 cut(s) | 325 |
| BmuI | ACTGGG | 1 cut(s) | 325 |
| BpiI | GAAGAC | 3 cut(s) | 1316, 1400, 2868 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3951, 3983 |
| BpmI | CTGGAG | 2 cut(s) | 7, 3978 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1113, 3071, 4187 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 470 |
| Bpu14I | TTCGAA | 1 cut(s) | 941 |
| BpuEI | CTTGAG | 2 cut(s) | 2599, 2628 |
| BpuMI | CCSGG | 1 cut(s) | 4220 |
| BsaAI | YACGTR | 1 cut(s) | 3812 |
| BsaI | GGTCTC | 1 cut(s) | 1722 |
| BsaJI | CCNNGG | 9 cut(s) | 46, 459, 574, 1236, 1576, 1608, 2267, 2916, 3180 |
| BsaWI | WCCGGW | 2 cut(s) | 279, 2111 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 346, 376, 382, 412, 553, 583, 799, 829 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 317, 1135, 3260, 4055 |
| Bse118I | RCCGGY | 1 cut(s) | 279 |
| Bse1I | ACTGG | 4 cut(s) | 24, 320, 3034, 3504 |
| Bse3DI | GCAATG | 3 cut(s) | 230, 1567, 2280 |
| BseAI | TCCGGA | 1 cut(s) | 2111 |
| BseBI | CCWGG | 2 cut(s) | 1610, 2018 |
| BseDI | CCNNGG | 9 cut(s) | 46, 459, 574, 1236, 1576, 1608, 2267, 2916, 3180 |
| BseGI | GGATG | 9 cut(s) | 137, 550, 2438, 2785, 2947, 3016, 3712, 3821, 4258 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 317, 1135, 3260, 4055 |
| BseMI | GCAATG | 3 cut(s) | 230, 1567, 2280 |
| BseNI | ACTGG | 4 cut(s) | 24, 320, 3034, 3504 |
| BseSI | GKGCMC | 2 cut(s) | 192, 3947 |
| BseXI | GCAGC | 7 cut(s) | 2304, 3219, 3736, 4041, 4183, 4235, 4238 |
| BsgI | GTGCAG | 2 cut(s) | 1682, 4179 |
| BshFI | GGCC | 9 cut(s) | 310, 573, 1128, 1421, 1893, 1982, 2165, 2923, 3171 |
| BshNI | GGYRCC | 1 cut(s) | 3766 |
| BshTI | ACCGGT | 1 cut(s) | 279 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2736, 4096 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1918, 2176 |
| BsiSI | CCGG | 3 cut(s) | 280, 2112, 4220 |
| BslFI | GGGAC | 5 cut(s) | 290, 1591, 1915, 2058, 2353 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 317, 1135, 3260, 4055 |
| BsmBI | CGTCTC | 2 cut(s) | 1221, 3450 |
| BsmFI | GGGAC | 5 cut(s) | 290, 1591, 1915, 2058, 2353 |
| BsnI | GGCC | 9 cut(s) | 310, 573, 1128, 1421, 1893, 1982, 2165, 2923, 3171 |
| Bso31I | GGTCTC | 1 cut(s) | 1722 |
| BsoBI | CYCGRG | 2 cut(s) | 1918, 2176 |
| Bsp119I | TTCGAA | 1 cut(s) | 941 |
| Bsp1286I | GDGCHC | 7 cut(s) | 192, 333, 2736, 3098, 3947, 4003, 4096 |
| Bsp13I | TCCGGA | 1 cut(s) | 2111 |
| Bsp143I | GATC | 8 cut(s) | 445, 630, 956, 1427, 1447, 1782, 2312, 3377 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 470 |
| Bsp19I | CCATGG | 1 cut(s) | 1576 |
| BspANI | GGCC | 9 cut(s) | 310, 573, 1128, 1421, 1893, 1982, 2165, 2923, 3171 |
| BspEI | TCCGGA | 1 cut(s) | 2111 |
| BspMAI | CTGCAG | 1 cut(s) | 2929 |
| BspMI | ACCTGC | 3 cut(s) | 1189, 1888, 3024 |
| BspPI | GGATC | 5 cut(s) | 964, 1422, 1435, 1790, 2320 |
| BspQI | GCTCTTC | 1 cut(s) | 2100 |
| BspT104I | TTCGAA | 1 cut(s) | 941 |
| BspT107I | GGYRCC | 1 cut(s) | 3766 |
| BspTNI | GGTCTC | 1 cut(s) | 1722 |
| BsrDI | GCAATG | 3 cut(s) | 230, 1567, 2280 |
| BsrFI | RCCGGY | 1 cut(s) | 279 |
| BsrI | ACTGG | 4 cut(s) | 24, 320, 3034, 3504 |
| BssAI | RCCGGY | 1 cut(s) | 279 |
| BssECI | CCNNGG | 9 cut(s) | 46, 459, 574, 1236, 1576, 1608, 2267, 2916, 3180 |
| BssMI | GATC | 8 cut(s) | 445, 630, 956, 1427, 1447, 1782, 2312, 3377 |
| BssSI | CACGAG | 1 cut(s) | 2887 |
| BssT1I | CCWWGG | 4 cut(s) | 46, 1236, 1576, 2916 |
| Bst2BI | CACGAG | 1 cut(s) | 2887 |
| Bst2UI | CCWGG | 2 cut(s) | 1610, 2018 |
| Bst6I | CTCTTC | 5 cut(s) | 603, 656, 996, 1710, 2100 |
| BstBAI | YACGTR | 1 cut(s) | 3812 |
| BstBI | TTCGAA | 1 cut(s) | 941 |
| BstC8I | GCNNGC | 8 cut(s) | 1436, 1895, 2388, 2925, 3087, 3304, 3477, 4212 |
| BstDSI | CCRYGG | 2 cut(s) | 1576, 2267 |
| BstF5I | GGATG | 9 cut(s) | 137, 550, 2438, 2785, 2947, 3016, 3712, 3821, 4258 |
| BstH2I | RGCGCY | 2 cut(s) | 949, 4232 |
| BstHHI | GCGC | 6 cut(s) | 948, 2139, 2322, 2397, 3540, 4231 |
| BstKTI | GATC | 8 cut(s) | 448, 633, 959, 1430, 1450, 1785, 2315, 3380 |
| BstMBI | GATC | 8 cut(s) | 445, 630, 956, 1427, 1447, 1782, 2312, 3377 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 2392, 3229, 3746, 4220 |
| BstNI | CCWGG | 2 cut(s) | 1610, 2018 |
| BstNSI | RCATGY | 1 cut(s) | 3089 |
| BstSCI | CCNGG | 3 cut(s) | 1608, 2016, 4218 |
| BstSFI | CTRYAG | 3 cut(s) | 1272, 2901, 2925 |
| BstSLI | GKGCMC | 2 cut(s) | 192, 3947 |
| BstV1I | GCAGC | 7 cut(s) | 2304, 3219, 3736, 4041, 4183, 4235, 4238 |
| BstV2I | GAAGAC | 3 cut(s) | 1316, 1400, 2868 |
| BstX2I | RGATCY | 3 cut(s) | 1427, 1782, 3377 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1517 |
| BstYI | RGATCY | 3 cut(s) | 1427, 1782, 3377 |
| BsuRI | GGCC | 9 cut(s) | 310, 573, 1128, 1421, 1893, 1982, 2165, 2923, 3171 |
| BtgI | CCRYGG | 2 cut(s) | 1576, 2267 |
| BtgZI | GCGATG | 1 cut(s) | 4271 |
| BtrI | CACGTC | 3 cut(s) | 1873, 2212, 4136 |
| BtsCI | GGATG | 9 cut(s) | 137, 550, 2438, 2785, 2947, 3016, 3712, 3821, 4258 |
| BtsIMutI | CAGTG | 3 cut(s) | 1627, 1941, 3984 |
| BveI | ACCTGC | 3 cut(s) | 1189, 1888, 3024 |
| Cac8I | GCNNGC | 8 cut(s) | 1436, 1895, 2388, 2925, 3087, 3304, 3477, 4212 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2795 |
| CfoI | GCGC | 6 cut(s) | 948, 2139, 2322, 2397, 3540, 4231 |
| Cfr10I | RCCGGY | 1 cut(s) | 279 |
| Cfr13I | GGNCC | 6 cut(s) | 277, 1980, 2164, 2921, 3036, 3544 |
| CsiI | ACCWGGT | 1 cut(s) | 2016 |
| Csp6I | GTAC | 6 cut(s) | 851, 924, 1156, 3633, 3767, 3788 |
| CspAI | ACCGGT | 1 cut(s) | 279 |
| CviQI | GTAC | 6 cut(s) | 851, 924, 1156, 3633, 3767, 3788 |
| DpnI | GATC | 8 cut(s) | 447, 632, 958, 1429, 1449, 1784, 2314, 3379 |
| DpnII | GATC | 8 cut(s) | 445, 630, 956, 1427, 1447, 1782, 2312, 3377 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2756 |
| EaeI | YGGCCR | 2 cut(s) | 571, 3169 |
| Eam1104I | CTCTTC | 5 cut(s) | 603, 656, 996, 1710, 2100 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2756 |
| EarI | CTCTTC | 5 cut(s) | 603, 656, 996, 1710, 2100 |
| EciI | GGCGGA | 2 cut(s) | 820, 1810 |
| Ecl136II | GAGCTC | 2 cut(s) | 2734, 4094 |
| Eco130I | CCWWGG | 4 cut(s) | 46, 1236, 1576, 2916 |
| Eco147I | AGGCCT | 2 cut(s) | 310, 1421 |
| Eco24I | GRGCYC | 5 cut(s) | 333, 2736, 3098, 4003, 4096 |
| Eco31I | GGTCTC | 1 cut(s) | 1722 |
| Eco32I | GATATC | 2 cut(s) | 750, 3293 |
| Eco47I | GGWCC | 3 cut(s) | 277, 3036, 3544 |
| Eco53kI | GAGCTC | 2 cut(s) | 2734, 4094 |
| Eco57I | CTGAAG | 9 cut(s) | 1068, 1362, 1965, 2081, 2382, 2514, 2694, 2817, 2880 |
| Eco72I | CACGTG | 1 cut(s) | 3812 |
| Eco88I | CYCGRG | 2 cut(s) | 1918, 2176 |
| EcoICRI | GAGCTC | 2 cut(s) | 2734, 4094 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2921 |
| EcoRI | GAATTC | 2 cut(s) | 1852, 2103 |
| EcoRII | CCWGG | 2 cut(s) | 1608, 2016 |
| EcoRV | GATATC | 2 cut(s) | 750, 3293 |
| EcoT14I | CCWWGG | 4 cut(s) | 46, 1236, 1576, 2916 |
| EcoT22I | ATGCAT | 2 cut(s) | 3872, 4287 |
| EcoT38I | GRGCYC | 5 cut(s) | 333, 2736, 3098, 4003, 4096 |
| ErhI | CCWWGG | 4 cut(s) | 46, 1236, 1576, 2916 |
| Esp3I | CGTCTC | 2 cut(s) | 1221, 3450 |
| FaqI | GGGAC | 5 cut(s) | 290, 1591, 1915, 2058, 2353 |
| FauI | CCCGC | 3 cut(s) | 266, 1439, 4242 |
| FauNDI | CATATG | 1 cut(s) | 3041 |
| FbaI | TGATCA | 1 cut(s) | 1447 |
| Fnu4HI | GCNGC | 7 cut(s) | 2318, 3233, 3750, 4030, 4172, 4224, 4227 |
| FokI | GGATG | 9 cut(s) | 124, 557, 2425, 2792, 2954, 3023, 3719, 3828, 4245 |
| FriOI | GRGCYC | 5 cut(s) | 333, 2736, 3098, 4003, 4096 |
| Fsp4HI | GCNGC | 7 cut(s) | 2318, 3233, 3750, 4030, 4172, 4224, 4227 |
| FspI | TGCGCA | 2 cut(s) | 2321, 2396 |
| GlaI | GCGC | 6 cut(s) | 947, 2138, 2321, 2396, 3539, 4230 |
| GluI | GCNGC | 7 cut(s) | 2318, 3233, 3750, 4030, 4172, 4224, 4227 |
| GsuI | CTGGAG | 2 cut(s) | 7, 3978 |
| HaeII | RGCGCY | 2 cut(s) | 949, 4232 |
| HaeIII | GGCC | 9 cut(s) | 310, 573, 1128, 1421, 1893, 1982, 2165, 2923, 3171 |
| HapII | CCGG | 3 cut(s) | 280, 2112, 4220 |
| HhaI | GCGC | 6 cut(s) | 948, 2139, 2322, 2397, 3540, 4231 |
| Hin6I | GCGC | 6 cut(s) | 946, 2137, 2320, 2395, 3538, 4229 |
| HinP1I | GCGC | 6 cut(s) | 946, 2137, 2320, 2395, 3538, 4229 |
| HincII | GTYRAC | 3 cut(s) | 1709, 1915, 3982 |
| HindII | GTYRAC | 3 cut(s) | 1709, 1915, 3982 |
| HindIII | AAGCTT | 3 cut(s) | 1322, 3879, 4010 |
| HpaII | CCGG | 3 cut(s) | 280, 2112, 4220 |
| HphI | GGTGA | 8 cut(s) | 455, 506, 931, 1037, 1100, 2687, 2831, 4070 |
| Hpy166II | GTNNAC | 6 cut(s) | 859, 1156, 1709, 1915, 3982, 4105 |
| Hpy8I | GTNNAC | 6 cut(s) | 859, 1156, 1709, 1915, 3982, 4105 |
| Hpy99I | CGWCG | 2 cut(s) | 661, 4137 |
| HpyCH4IV | ACGT | 5 cut(s) | 1681, 1872, 2211, 3811, 4135 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 2392, 3229, 3746, 4220 |
| HpySE526I | ACGT | 5 cut(s) | 1681, 1872, 2211, 3811, 4135 |
| HspAI | GCGC | 6 cut(s) | 946, 2137, 2320, 2395, 3538, 4229 |
| Kpn2I | TCCGGA | 1 cut(s) | 2111 |
| KpnI | GGTACC | 1 cut(s) | 3770 |
| Ksp22I | TGATCA | 1 cut(s) | 1447 |
| Kzo9I | GATC | 8 cut(s) | 445, 630, 956, 1427, 1447, 1782, 2312, 3377 |
| LguI | GCTCTTC | 1 cut(s) | 2100 |
| LmnI | GCTCC | 9 cut(s) | 26, 56, 336, 2731, 3535, 3959, 4006, 4019, 4099 |
| Lsp1109I | GCAGC | 7 cut(s) | 2304, 3219, 3736, 4041, 4183, 4235, 4238 |
| MabI | ACCWGGT | 1 cut(s) | 2016 |
| MaeII | ACGT | 5 cut(s) | 1681, 1872, 2211, 3811, 4135 |
| MalI | GATC | 8 cut(s) | 447, 632, 958, 1429, 1449, 1784, 2314, 3379 |
| MboI | GATC | 8 cut(s) | 445, 630, 956, 1427, 1447, 1782, 2312, 3377 |
| MfeI | CAATTG | 2 cut(s) | 753, 2297 |
| MflI | RGATCY | 3 cut(s) | 1427, 1782, 3377 |
| MhlI | GDGCHC | 7 cut(s) | 192, 333, 2736, 3098, 3947, 4003, 4096 |
| MlsI | TGGCCA | 1 cut(s) | 3171 |
| MluNI | TGGCCA | 1 cut(s) | 3171 |
| MmeI | TCCRAC | 1 cut(s) | 4156 |
| Mox20I | TGGCCA | 1 cut(s) | 3171 |
| Mph1103I | ATGCAT | 2 cut(s) | 3872, 4287 |
| MroI | TCCGGA | 1 cut(s) | 2111 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2367, 3127, 3729 |
| MscI | TGGCCA | 1 cut(s) | 3171 |
| MseI | TTAA | 7 cut(s) | 534, 1721, 2667, 2964, 3275, 3690, 4271 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1581, 2068, 2144, 2817, 3814 |
| Msp20I | TGGCCA | 1 cut(s) | 3171 |
| MspA1I | CMGCKG | 5 cut(s) | 1694, 2126, 3232, 4032, 4186 |
| MspI | CCGG | 3 cut(s) | 280, 2112, 4220 |
| MspR9I | CCNGG | 3 cut(s) | 1610, 2018, 4220 |
| MunI | CAATTG | 2 cut(s) | 753, 2297 |
| MvaI | CCWGG | 2 cut(s) | 1610, 2018 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 2392, 3229, 3746, 4220 |
| NciI | CCSGG | 1 cut(s) | 4220 |
| NcoI | CCATGG | 1 cut(s) | 1576 |
| NdeI | CATATG | 1 cut(s) | 3041 |
| NdeII | GATC | 8 cut(s) | 445, 630, 956, 1427, 1447, 1782, 2312, 3377 |
| NmeAIII | GCCGAG | 2 cut(s) | 484, 599 |
| NmuCI | GTSAC | 5 cut(s) | 1528, 1682, 2028, 2171, 2944 |
| NsbI | TGCGCA | 2 cut(s) | 2321, 2396 |
| NsiI | ATGCAT | 2 cut(s) | 3872, 4287 |
| NspI | RCATGY | 1 cut(s) | 3089 |
| NspV | TTCGAA | 1 cut(s) | 941 |
| PaeI | GCATGC | 1 cut(s) | 3089 |
| PceI | AGGCCT | 2 cut(s) | 310, 1421 |
| PciSI | GCTCTTC | 1 cut(s) | 2100 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 456 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2367, 3127, 3729 |
| PinAI | ACCGGT | 1 cut(s) | 279 |
| PkrI | GCNGC | 7 cut(s) | 2319, 3234, 3751, 4031, 4173, 4225, 4228 |
| PmaCI | CACGTG | 1 cut(s) | 3812 |
| PmlI | CACGTG | 1 cut(s) | 3812 |
| Ppu21I | YACGTR | 1 cut(s) | 3812 |
| Psp124BI | GAGCTC | 2 cut(s) | 2736, 4096 |
| Psp6I | CCWGG | 2 cut(s) | 1608, 2016 |
| PspCI | CACGTG | 1 cut(s) | 3812 |
| PspGI | CCWGG | 2 cut(s) | 1608, 2016 |
| PspPI | GGNCC | 6 cut(s) | 277, 1980, 2164, 2921, 3036, 3544 |
| PstI | CTGCAG | 1 cut(s) | 2929 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2795 |
| PsuI | RGATCY | 3 cut(s) | 1427, 1782, 3377 |
| PvuII | CAGCTG | 4 cut(s) | 1694, 3232, 4032, 4186 |
| RsaI | GTAC | 6 cut(s) | 852, 925, 1157, 3634, 3768, 3789 |
| RsaNI | GTAC | 6 cut(s) | 851, 924, 1156, 3633, 3767, 3788 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1581, 2068, 2144, 2817, 3814 |
| SacI | GAGCTC | 2 cut(s) | 2736, 4096 |
| SapI | GCTCTTC | 1 cut(s) | 2100 |
| SaqAI | TTAA | 7 cut(s) | 534, 1721, 2667, 2964, 3275, 3690, 4271 |
| SatI | GCNGC | 7 cut(s) | 2318, 3233, 3750, 4030, 4172, 4224, 4227 |
| Sau3AI | GATC | 8 cut(s) | 445, 630, 956, 1427, 1447, 1782, 2312, 3377 |
| Sau96I | GGNCC | 6 cut(s) | 277, 1980, 2164, 2921, 3036, 3544 |
| ScaI | AGTACT | 1 cut(s) | 925 |
| ScrFI | CCNGG | 3 cut(s) | 1610, 2018, 4220 |
| SduI | GDGCHC | 7 cut(s) | 192, 333, 2736, 3098, 3947, 4003, 4096 |
| SexAI | ACCWGGT | 1 cut(s) | 2016 |
| SfcI | CTRYAG | 3 cut(s) | 1272, 2901, 2925 |
| SfuI | TTCGAA | 1 cut(s) | 941 |
| SinI | GGWCC | 3 cut(s) | 277, 3036, 3544 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1581, 2068, 2144, 2817, 3814 |
| SmlI | CTYRAG | 2 cut(s) | 2614, 2643 |
| SmoI | CTYRAG | 2 cut(s) | 2614, 2643 |
| SphI | GCATGC | 1 cut(s) | 3089 |
| SseBI | AGGCCT | 2 cut(s) | 310, 1421 |
| SspI | AATATT | 1 cut(s) | 1972 |
| SstI | GAGCTC | 2 cut(s) | 2736, 4096 |
| StuI | AGGCCT | 2 cut(s) | 310, 1421 |
| StyD4I | CCNGG | 3 cut(s) | 1608, 2016, 4218 |
| StyI | CCWWGG | 4 cut(s) | 46, 1236, 1576, 2916 |
| TaiI | ACGT | 5 cut(s) | 1684, 1875, 2214, 3814, 4138 |
| TaqII | GACCGA | 2 cut(s) | 1694, 3885 |
| TatI | WGTACW | 1 cut(s) | 923 |
| Tru1I | TTAA | 7 cut(s) | 534, 1721, 2667, 2964, 3275, 3690, 4271 |
| Tru9I | TTAA | 7 cut(s) | 534, 1721, 2667, 2964, 3275, 3690, 4271 |
| TscAI | CASTG | 3 cut(s) | 1627, 1948, 3991 |
| TseFI | GTSAC | 5 cut(s) | 1528, 1682, 2028, 2171, 2944 |
| TseI | GCWGC | 7 cut(s) | 2317, 3232, 3749, 4029, 4171, 4223, 4226 |
| Tsp45I | GTSAC | 5 cut(s) | 1528, 1682, 2028, 2171, 2944 |
| TspGWI | ACGGA | 1 cut(s) | 170 |
| TspRI | CASTG | 3 cut(s) | 1627, 1948, 3991 |
| VpaK11BI | GGWCC | 3 cut(s) | 277, 3036, 3544 |
| XapI | RAATTY | 8 cut(s) | 170, 1169, 1547, 1852, 2103, 2367, 3492, 4248 |
| XbaI | TCTAGA | 3 cut(s) | 251, 1538, 2371 |
| XceI | RCATGY | 1 cut(s) | 3089 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1901 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2367, 3127, 3729 |
| ZrmI | AGTACT | 1 cut(s) | 925 |
| Zsp2I | ATGCAT | 2 cut(s) | 3872, 4287 |