Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8246795.1

Orthogroup ID

OG0007376

Physical Location & Seq

Genomic Coordinates Reverse (-)

35 .. 700

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8246795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgacatcttctccaaataaagaggaaagtaggtcgacgtcaaaatctgtttccttgtcttctggtgaggagactttgagtccgaaagataatcaaaagaatttccgaggttcttcttctggcattcagattgttgaatcgtcacaatcacaaattgctagtggcataaagtctcctgttgtggaagaaatttcaaatgctggttacgccgtctctggaagtgtttcaaaagataaccaaaagaattttagaggttcttcttctggcattcaaatagttgaatcatcacaatcacaaattgctagtggcataaagtatcctgttgtggaagaaatttcagacgctggttacactgtttctggaagtggttcagaggagaacagggaccaatttggttgtcagcagtttgatgaagagtcagacaatgtgcaaaagggtgcagaattgaaacaaaggaagcttcaaaggaataagcaagtcctgaaagacagatttgatgaatgggaagaagctcagaatcttgaaattgaacagagaaaaacagatgaattttttatgagagaagcactgcttgaagcgaagaaggctgctgatacttgggaggttcctgttggtgctgtactggtgcaacaggggaaggttattgcacgtggatttaacctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002097 GO:0002100 GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006382 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016553 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MafB19-deam dCMP_cyt_deam_1

Protein Analysis

221

Amino Acids

24.22

Weight (kDa)

4.94

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68720
fragaria_vesca	FvH4_4g28440 FvH4_4g28440 FvH4_4g28440
malus_domestica	MD13G1050100.v1.1 MD13G1050300.v1.1 MD16G1051000.v1.1
prunus_persica	Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1 Prupe.1G301600_v2.0.a1
pyrus_communis	pycom13g04440 pycom16g04480
rosa_chinensis	RchiOBHm_Chr4g0436391 RchiOBHm_Chr4g0436401
rosa_laevigata	RLG00000006522
rosa_multiflora	Rmu_co8246795.1_g000001 Rmu_co8256611.1_g000001 Rmu_sc0010255.1_g000001 Rmu_sc0016929.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377560
rosa_rugosa	Rorug04G0293500
rosa_samantha	Rh4AG347800 Rh4BG356600 Rh4CG371200
rosa_wichuraiana	Rw4G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	35
AcsI	RAATTY	5 cut(s)	100, 189, 244, 333, 548
AcvI	CACGTG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	621
AhdI	GACNNNNNGTC	1 cut(s)	78
AluBI	AGCT	2 cut(s)	460, 512
AluI	AGCT	2 cut(s)	460, 512
Alw26I	GTCTC	3 cut(s)	65, 177, 217
AlwNI	CAGNNNCTG	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	5 cut(s)	100, 189, 244, 333, 548
Asp700I	GAANNNNTTC	2 cut(s)	223, 367
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	385
BbrPI	CACGTG	1 cut(s)	650
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	574
BceAI	ACGGC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	65, 177, 217
BfaI	CTAG	2 cut(s)	159, 303
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
Bme18I	GGWCC	1 cut(s)	385
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	386, 606
BpiI	GAAGAC	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	650
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	627
BseRI	GAGGAG	2 cut(s)	83, 389
BseXI	GCAGC	1 cut(s)	574
BsgI	GTGCAG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	398
BsmAI	GTCTC	3 cut(s)	65, 177, 217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	2 cut(s)	123, 267
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	386, 606
BsrI	ACTGG	1 cut(s)	627
BssECI	CCNNGG	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	650
BstDEI	CTNAG	1 cut(s)	513
BstMAI	GTCTC	3 cut(s)	65, 177, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 584
BstV1I	GCAGC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	351, 566
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	620
CviJI	RGCY	3 cut(s)	460, 512, 587
CviKI_1	RGCY	3 cut(s)	460, 512, 587
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	1 cut(s)	513
DriI	GACNNNNNGTC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	408
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	385
Eco72I	CACGTG	1 cut(s)	650
Esp3I	CGTCTC	1 cut(s)	217
FaiI	YATR	3 cut(s)	167, 311, 557
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	398
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	588
Fsp4HI	GCNGC	1 cut(s)	588
FspBI	CTAG	2 cut(s)	159, 303
GluI	GCNGC	1 cut(s)	588
HgaI	GACGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	5 cut(s)	79, 137, 281, 416, 517
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	7 cut(s)	84, 107, 129, 340, 373, 421, 516
Hpy188III	TCNNGA	4 cut(s)	216, 360, 481, 521
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	577, 631
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	38, 649
HpyCH4V	TGCA	4 cut(s)	430, 440, 628, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 584
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	2 cut(s)	38, 649
Hsp92I	GRCGYC	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	574
MaeI	CTAG	2 cut(s)	159, 303
MaeII	ACGT	2 cut(s)	38, 649
MaeIII	GTNAC	3 cut(s)	141, 203, 347
MlyI	GAGTC	2 cut(s)	88, 425
MnlI	CCTC	6 cut(s)	16, 61, 101, 245, 367, 595
MroXI	GAANNNNTTC	2 cut(s)	223, 367
MseI	TTAA	1 cut(s)	657
Mva1269I	GAATGC	2 cut(s)	123, 267
MwoI	GCNNNNNNNGC	2 cut(s)	206, 584
NlaIV	GGNNCC	2 cut(s)	386, 606
NmuCI	GTSAC	1 cut(s)	141
PctI	GAATGC	2 cut(s)	123, 267
PdmI	GAANNNNTTC	2 cut(s)	223, 367
PfeI	GAWTC	3 cut(s)	137, 281, 517
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	2 cut(s)	87, 424
PmaCI	CACGTG	1 cut(s)	650
PmlI	CACGTG	1 cut(s)	650
PpsI	GAGTC	2 cut(s)	87, 424
Ppu21I	YACGTR	1 cut(s)	650
PspCI	CACGTG	1 cut(s)	650
PspN4I	GGNNCC	2 cut(s)	386, 606
PspPI	GGNCC	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
SalI	GTCGAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	1 cut(s)	588
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	2 cut(s)	88, 425
SinI	GGWCC	1 cut(s)	385
SspMI	CTAG	2 cut(s)	159, 303
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	41, 652
TaqI	TCGA	1 cut(s)	35
TatI	WGTACW	1 cut(s)	619
TfiI	GAWTC	3 cut(s)	137, 281, 517
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	2 cut(s)	358, 573
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	3 cut(s)	426, 513, 561
TspRI	CASTG	2 cut(s)	358, 573
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	5 cut(s)	100, 189, 244, 333, 548
XmiI	GTMKAC	1 cut(s)	35
XmnI	GAANNNNTTC	2 cut(s)	223, 367
XspI	CTAG	2 cut(s)	159, 303
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.