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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24460 AT1G24460 |
| fragaria_vesca | FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 |
| malus_domestica | MD13G1107800.v1.1 MD16G1107700.v1.1 |
| prunus_persica | Prupe.1G238600_v2.0.a1 |
| pyrus_communis | pycom01g03020 pycom13g09320 pycom16g09190 |
| rosa_chinensis | RchiOBHm_Chr4g0431991 |
| rosa_laevigata | RLG00000006869 |
| rosa_multiflora | Rmu_co8237653.1_g000001 Rmu_co8348741.1_g000001 Rmu_sc0003919.1_g000022 Rmu_sc0004965.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00373540 |
| rosa_rugosa | Rorug04G0254100 |
| rosa_samantha | Rh4AG311400 Rh4BG318500 Rh4CG333800 Rh4DG313400 |
| rosa_wichuraiana | Rw4G027070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3594 |
| AatII | GACGTC | 1 cut(s) | 147 |
| Acc36I | ACCTGC | 4 cut(s) | 31, 3537, 3594, 5008 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 452 |
| AccI | GTMKAC | 3 cut(s) | 2595, 4252, 4968 |
| AccII | CGCG | 3 cut(s) | 593, 1668, 1903 |
| AclWI | GGATC | 7 cut(s) | 636, 2247, 2655, 3349, 3362, 4437, 5239 |
| AcoI | YGGCCR | 4 cut(s) | 114, 182, 1200, 3612 |
| AcuI | CTGAAG | 7 cut(s) | 1473, 2016, 3437, 3486, 4626, 4650, 4742 |
| AcyI | GRCGYC | 1 cut(s) | 144 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 223, 370, 411, 452, 3250, 5198, 5269, 5423 |
| AflII | CTTAAG | 1 cut(s) | 4085 |
| AflIII | ACRYGT | 2 cut(s) | 856, 2682 |
| AgeI | ACCGGT | 1 cut(s) | 1442 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1603 |
| AjnI | CCWGG | 7 cut(s) | 28, 216, 515, 896, 944, 5064, 5166 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 338, 370, 2471, 2503, 3285, 3317, 4116, 4148 |
| Alw21I | GWGCWC | 3 cut(s) | 1014, 1175, 4166 |
| AlwI | GGATC | 7 cut(s) | 636, 2247, 2655, 3349, 3362, 4437, 5239 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 46, 2120, 3833, 4628 |
| Ama87I | CYCGRG | 2 cut(s) | 253, 4203 |
| AoxI | GGCC | 9 cut(s) | 114, 182, 588, 1200, 1641, 3210, 3219, 3612, 3816 |
| AsiGI | ACCGGT | 1 cut(s) | 1442 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1458, 2214, 3888 |
| AspLEI | GCGC | 3 cut(s) | 1316, 1668, 1903 |
| AspS9I | GGNCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| AsuC2I | CCSGG | 3 cut(s) | 2468, 4204, 4205 |
| AsuII | TTCGAA | 1 cut(s) | 125 |
| AsuNHI | GCTAGC | 2 cut(s) | 3026, 3370 |
| AvaI | CYCGRG | 2 cut(s) | 253, 4203 |
| AvaII | GGWCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 321, 354, 1431, 1464, 2770, 2803 |
| BalI | TGGCCA | 2 cut(s) | 116, 3614 |
| BamHI | GGATCC | 1 cut(s) | 3354 |
| BanII | GRGCYC | 3 cut(s) | 1014, 4166, 4701 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 743, 775, 4715, 4747 |
| BbsI | GAAGAC | 6 cut(s) | 401, 1923, 2022, 3474, 3834, 4614 |
| Bbv12I | GWGCWC | 3 cut(s) | 1014, 1175, 4166 |
| BbvCI | CCTCAGC | 1 cut(s) | 63 |
| BceAI | ACGGC | 2 cut(s) | 576, 1187 |
| BciT130I | CCWGG | 7 cut(s) | 30, 218, 517, 898, 946, 5066, 5168 |
| BciVI | GTATCC | 5 cut(s) | 322, 505, 748, 1402, 2771 |
| BclI | TGATCA | 2 cut(s) | 436, 811 |
| BcnI | CCSGG | 3 cut(s) | 2468, 4204, 4205 |
| BfmI | CTRYAG | 7 cut(s) | 2372, 3147, 3924, 3959, 4253, 4373, 4799 |
| BfrI | CTTAAG | 1 cut(s) | 4085 |
| BfuAI | ACCTGC | 4 cut(s) | 31, 3537, 3594, 5008 |
| BfuI | GTATCC | 5 cut(s) | 322, 505, 748, 1402, 2771 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3218 |
| BglII | AGATCT | 2 cut(s) | 952, 4369 |
| BlpI | GCTNAGC | 1 cut(s) | 5151 |
| BmcAI | AGTACT | 1 cut(s) | 1860 |
| Bme18I | GGWCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1603 |
| BmeT110I | CYCGRG | 2 cut(s) | 253, 4203 |
| BmgT120I | GGNCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| BmiI | GGNNCC | 6 cut(s) | 2368, 2369, 3356, 3872, 4698, 5551 |
| BmtI | GCTAGC | 2 cut(s) | 3030, 3374 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5376 |
| BpiI | GAAGAC | 6 cut(s) | 401, 1923, 2022, 3474, 3834, 4614 |
| BpmI | CTGGAG | 2 cut(s) | 68, 1172 |
| Bpu10I | CCTNAGC | 4 cut(s) | 63, 1622, 2414, 4173 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5151 |
| Bpu14I | TTCGAA | 1 cut(s) | 125 |
| BpuEI | CTTGAG | 7 cut(s) | 1028, 1298, 1502, 1567, 1593, 2546, 3006 |
| BpuMI | CCSGG | 3 cut(s) | 2468, 4204, 4205 |
| Bsa29I | ATCGAT | 2 cut(s) | 449, 5448 |
| BsaAI | YACGTR | 1 cut(s) | 1700 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2619, 4667 |
| BsaHI | GRCGYC | 1 cut(s) | 144 |
| BsaI | GGTCTC | 2 cut(s) | 4220, 5414 |
| BsaWI | WCCGGW | 1 cut(s) | 1442 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 560, 590, 1418, 1448, 2067, 2097, 3117, 3147 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 223, 370, 411, 452, 3250, 5198, 5269, 5423 |
| Bse118I | RCCGGY | 3 cut(s) | 154, 184, 1442 |
| Bse3DI | GCAATG | 6 cut(s) | 300, 1254, 2715, 2769, 3410, 4582 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2619, 4667 |
| BseBI | CCWGG | 7 cut(s) | 30, 218, 517, 898, 946, 5066, 5168 |
| BseCI | ATCGAT | 2 cut(s) | 449, 5448 |
| BseJI | GATNNNNATC | 2 cut(s) | 2619, 4667 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 223, 370, 411, 452, 3250, 5198, 5269, 5423 |
| BseMI | GCAATG | 6 cut(s) | 300, 1254, 2715, 2769, 3410, 4582 |
| BseRI | GAGGAG | 6 cut(s) | 278, 1439, 2411, 4701, 4862, 5516 |
| BsgI | GTGCAG | 2 cut(s) | 1247, 4510 |
| Bsh1236I | CGCG | 3 cut(s) | 593, 1668, 1903 |
| Bsh1285I | CGRYCG | 1 cut(s) | 5473 |
| BshFI | GGCC | 9 cut(s) | 116, 184, 590, 1202, 1643, 3212, 3221, 3614, 3818 |
| BshTI | ACCGGT | 1 cut(s) | 1442 |
| BshVI | ATCGAT | 2 cut(s) | 449, 5448 |
| BsiEI | CGRYCG | 1 cut(s) | 5473 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1014, 1175, 4166 |
| BsiHKCI | CYCGRG | 2 cut(s) | 253, 4203 |
| BsiSI | CCGG | 6 cut(s) | 155, 185, 938, 1443, 2467, 4204 |
| BslFI | GGGAC | 5 cut(s) | 1250, 2380, 2466, 2579, 4828 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 223, 370, 411, 452, 3250, 5198, 5269, 5423 |
| BsmBI | CGTCTC | 1 cut(s) | 132 |
| BsmFI | GGGAC | 5 cut(s) | 1250, 2380, 2466, 2579, 4828 |
| BsmI | GAATGC | 5 cut(s) | 133, 430, 545, 1126, 2564 |
| BsnI | GGCC | 9 cut(s) | 116, 184, 590, 1202, 1643, 3212, 3221, 3614, 3818 |
| Bso31I | GGTCTC | 2 cut(s) | 4220, 5414 |
| BsoBI | CYCGRG | 2 cut(s) | 253, 4203 |
| Bsp119I | TTCGAA | 1 cut(s) | 125 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1014, 1175, 4166, 4701 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5151 |
| Bsp19I | CCATGG | 1 cut(s) | 2430 |
| BspANI | GGCC | 9 cut(s) | 116, 184, 590, 1202, 1643, 3212, 3221, 3614, 3818 |
| BspDI | ATCGAT | 2 cut(s) | 449, 5448 |
| BspFNI | CGCG | 3 cut(s) | 593, 1668, 1903 |
| BspHI | TCATGA | 2 cut(s) | 475, 3702 |
| BspLI | GGNNCC | 6 cut(s) | 2368, 2369, 3356, 3872, 4698, 5551 |
| BspMAI | CTGCAG | 4 cut(s) | 2376, 3151, 4377, 4803 |
| BspMI | ACCTGC | 4 cut(s) | 31, 3537, 3594, 5008 |
| BspOI | GCTAGC | 2 cut(s) | 3030, 3374 |
| BspPI | GGATC | 7 cut(s) | 636, 2247, 2655, 3349, 3362, 4437, 5239 |
| BspQI | GCTCTTC | 4 cut(s) | 2727, 2739, 3708, 4788 |
| BspT104I | TTCGAA | 1 cut(s) | 125 |
| BspTI | CTTAAG | 1 cut(s) | 4085 |
| BspTNI | GGTCTC | 2 cut(s) | 4220, 5414 |
| BsrDI | GCAATG | 6 cut(s) | 300, 1254, 2715, 2769, 3410, 4582 |
| BsrFI | RCCGGY | 3 cut(s) | 154, 184, 1442 |
| BssAI | RCCGGY | 3 cut(s) | 154, 184, 1442 |
| BssNI | GRCGYC | 1 cut(s) | 144 |
| BssT1I | CCWWGG | 9 cut(s) | 117, 654, 796, 1338, 1890, 2430, 2802, 3381, 5121 |
| Bst2UI | CCWGG | 7 cut(s) | 30, 218, 517, 898, 946, 5066, 5168 |
| Bst6I | CTCTTC | 9 cut(s) | 2088, 2154, 2349, 2727, 2739, 3063, 3507, 3708, 4788 |
| BstACI | GRCGYC | 1 cut(s) | 144 |
| BstAFI | CTTAAG | 1 cut(s) | 4085 |
| BstBAI | YACGTR | 1 cut(s) | 1700 |
| BstBI | TTCGAA | 1 cut(s) | 125 |
| BstDSI | CCRYGG | 2 cut(s) | 591, 2430 |
| BstFNI | CGCG | 3 cut(s) | 593, 1668, 1903 |
| BstHHI | GCGC | 3 cut(s) | 1316, 1668, 1903 |
| BstMCI | CGRYCG | 1 cut(s) | 5473 |
| BstNI | CCWGG | 7 cut(s) | 30, 218, 517, 898, 946, 5066, 5168 |
| BstNSI | RCATGY | 3 cut(s) | 860, 1565, 2686 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5376 |
| BstSFI | CTRYAG | 7 cut(s) | 2372, 3147, 3924, 3959, 4253, 4373, 4799 |
| BstUI | CGCG | 3 cut(s) | 593, 1668, 1903 |
| BstV2I | GAAGAC | 6 cut(s) | 401, 1923, 2022, 3474, 3834, 4614 |
| BstX2I | RGATCY | 4 cut(s) | 952, 3354, 4369, 4429 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1897, 5072 |
| BstYI | RGATCY | 4 cut(s) | 952, 3354, 4369, 4429 |
| Bsu15I | ATCGAT | 2 cut(s) | 449, 5448 |
| BsuI | GTATCC | 5 cut(s) | 322, 505, 748, 1402, 2771 |
| BsuRI | GGCC | 9 cut(s) | 116, 184, 590, 1202, 1643, 3212, 3221, 3614, 3818 |
| BsuTUI | ATCGAT | 2 cut(s) | 449, 5448 |
| BtgI | CCRYGG | 2 cut(s) | 591, 2430 |
| BtgZI | GCGATG | 1 cut(s) | 1683 |
| BtsI | GCAGTG | 1 cut(s) | 4382 |
| BveI | ACCTGC | 4 cut(s) | 31, 3537, 3594, 5008 |
| CaiI | CAGNNNCTG | 4 cut(s) | 46, 2120, 3833, 4628 |
| CciI | TCATGA | 2 cut(s) | 475, 3702 |
| CfoI | GCGC | 3 cut(s) | 1316, 1668, 1903 |
| Cfr10I | RCCGGY | 3 cut(s) | 154, 184, 1442 |
| Cfr13I | GGNCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| Cfr42I | CCGCGG | 1 cut(s) | 594 |
| Cfr9I | CCCGGG | 1 cut(s) | 4203 |
| ClaI | ATCGAT | 2 cut(s) | 449, 5448 |
| CsiI | ACCWGGT | 2 cut(s) | 216, 515 |
| CspAI | ACCGGT | 1 cut(s) | 1442 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4329, 4364 |
| DraI | TTTAAA | 1 cut(s) | 2889 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1603 |
| EaeI | YGGCCR | 4 cut(s) | 114, 182, 1200, 3612 |
| Eam1104I | CTCTTC | 9 cut(s) | 2088, 2154, 2349, 2727, 2739, 3063, 3507, 3708, 4788 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1603 |
| EarI | CTCTTC | 9 cut(s) | 2088, 2154, 2349, 2727, 2739, 3063, 3507, 3708, 4788 |
| EciI | GGCGGA | 3 cut(s) | 83, 206, 239 |
| Ecl136II | GAGCTC | 2 cut(s) | 1012, 4164 |
| Eco130I | CCWWGG | 9 cut(s) | 117, 654, 796, 1338, 1890, 2430, 2802, 3381, 5121 |
| Eco24I | GRGCYC | 3 cut(s) | 1014, 4166, 4701 |
| Eco31I | GGTCTC | 2 cut(s) | 4220, 5414 |
| Eco32I | GATATC | 1 cut(s) | 5211 |
| Eco47I | GGWCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| Eco53kI | GAGCTC | 2 cut(s) | 1012, 4164 |
| Eco57I | CTGAAG | 7 cut(s) | 1473, 2016, 3437, 3486, 4626, 4650, 4742 |
| Eco88I | CYCGRG | 2 cut(s) | 253, 4203 |
| EcoICRI | GAGCTC | 2 cut(s) | 1012, 4164 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2367 |
| EcoRI | GAATTC | 4 cut(s) | 703, 1535, 3706, 4483 |
| EcoRII | CCWGG | 7 cut(s) | 28, 216, 515, 896, 944, 5064, 5166 |
| EcoRV | GATATC | 1 cut(s) | 5211 |
| EcoT14I | CCWWGG | 9 cut(s) | 117, 654, 796, 1338, 1890, 2430, 2802, 3381, 5121 |
| EcoT22I | ATGCAT | 4 cut(s) | 1563, 2144, 3412, 5404 |
| EcoT38I | GRGCYC | 3 cut(s) | 1014, 4166, 4701 |
| ErhI | CCWWGG | 9 cut(s) | 117, 654, 796, 1338, 1890, 2430, 2802, 3381, 5121 |
| Esp3I | CGTCTC | 1 cut(s) | 132 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 370, 402, 3876, 3908, 4712, 4744 |
| FaqI | GGGAC | 5 cut(s) | 1250, 2380, 2466, 2579, 4828 |
| FauI | CCCGC | 2 cut(s) | 2316, 5136 |
| FauNDI | CATATG | 1 cut(s) | 3751 |
| FbaI | TGATCA | 2 cut(s) | 436, 811 |
| FblI | GTMKAC | 3 cut(s) | 2595, 4252, 4968 |
| FriOI | GRGCYC | 3 cut(s) | 1014, 4166, 4701 |
| GlaI | GCGC | 3 cut(s) | 1315, 1667, 1902 |
| GsuI | CTGGAG | 2 cut(s) | 68, 1172 |
| HaeIII | GGCC | 9 cut(s) | 116, 184, 590, 1202, 1643, 3212, 3221, 3614, 3818 |
| HapII | CCGG | 6 cut(s) | 155, 185, 938, 1443, 2467, 4204 |
| HhaI | GCGC | 3 cut(s) | 1316, 1668, 1903 |
| Hin1I | GRCGYC | 1 cut(s) | 144 |
| Hin6I | GCGC | 3 cut(s) | 1314, 1666, 1901 |
| HinP1I | GCGC | 3 cut(s) | 1314, 1666, 1901 |
| HincII | GTYRAC | 5 cut(s) | 1335, 2134, 3364, 4806, 5350 |
| HindII | GTYRAC | 5 cut(s) | 1335, 2134, 3364, 4806, 5350 |
| HindIII | AAGCTT | 2 cut(s) | 1190, 4314 |
| HpaI | GTTAAC | 2 cut(s) | 1335, 3364 |
| HpaII | CCGG | 6 cut(s) | 155, 185, 938, 1443, 2467, 4204 |
| Hpy99I | CGWCG | 2 cut(s) | 146, 149 |
| HpyCH4IV | ACGT | 5 cut(s) | 144, 1699, 3360, 4293, 4734 |
| HpySE526I | ACGT | 5 cut(s) | 144, 1699, 3360, 4293, 4734 |
| Hsp92I | GRCGYC | 1 cut(s) | 144 |
| HspAI | GCGC | 3 cut(s) | 1314, 1666, 1901 |
| KflI | GGGWCCC | 1 cut(s) | 2367 |
| Ksp22I | TGATCA | 2 cut(s) | 436, 811 |
| KspAI | GTTAAC | 2 cut(s) | 1335, 3364 |
| KspI | CCGCGG | 1 cut(s) | 594 |
| LguI | GCTCTTC | 4 cut(s) | 2727, 2739, 3708, 4788 |
| LmnI | GCTCC | 4 cut(s) | 1153, 1356, 3125, 4696 |
| MabI | ACCWGGT | 2 cut(s) | 216, 515 |
| MaeII | ACGT | 5 cut(s) | 144, 1699, 3360, 4293, 4734 |
| MfeI | CAATTG | 9 cut(s) | 99, 1317, 1566, 3003, 3081, 4362, 4838, 5033, 5316 |
| MflI | RGATCY | 4 cut(s) | 952, 3354, 4369, 4429 |
| MhlI | GDGCHC | 4 cut(s) | 1014, 1175, 4166, 4701 |
| MlsI | TGGCCA | 2 cut(s) | 116, 3614 |
| MluNI | TGGCCA | 2 cut(s) | 116, 3614 |
| MmeI | TCCRAC | 4 cut(s) | 285, 807, 3717, 4437 |
| Mox20I | TGGCCA | 2 cut(s) | 116, 3614 |
| Mph1103I | ATGCAT | 4 cut(s) | 1563, 2144, 3412, 5404 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1458, 2214, 3888 |
| MscI | TGGCCA | 2 cut(s) | 116, 3614 |
| MslI | CAYNNNNRTG | 4 cut(s) | 14, 875, 899, 2229 |
| Msp20I | TGGCCA | 2 cut(s) | 116, 3614 |
| MspA1I | CMGCKG | 6 cut(s) | 421, 593, 1736, 1940, 4112, 5270 |
| MspCI | CTTAAG | 1 cut(s) | 4085 |
| MspI | CCGG | 6 cut(s) | 155, 185, 938, 1443, 2467, 4204 |
| MunI | CAATTG | 9 cut(s) | 99, 1317, 1566, 3003, 3081, 4362, 4838, 5033, 5316 |
| Mva1269I | GAATGC | 5 cut(s) | 133, 430, 545, 1126, 2564 |
| MvaI | CCWGG | 7 cut(s) | 30, 218, 517, 898, 946, 5066, 5168 |
| MvnI | CGCG | 3 cut(s) | 593, 1668, 1903 |
| NciI | CCSGG | 3 cut(s) | 2468, 4204, 4205 |
| NcoI | CCATGG | 1 cut(s) | 2430 |
| NdeI | CATATG | 1 cut(s) | 3751 |
| NheI | GCTAGC | 2 cut(s) | 3026, 3370 |
| NlaIV | GGNNCC | 6 cut(s) | 2368, 2369, 3356, 3872, 4698, 5551 |
| NmeAIII | GCCGAG | 1 cut(s) | 175 |
| NmuCI | GTSAC | 7 cut(s) | 241, 772, 1204, 3060, 3754, 4677, 4987 |
| NsiI | ATGCAT | 4 cut(s) | 1563, 2144, 3412, 5404 |
| NspI | RCATGY | 3 cut(s) | 860, 1565, 2686 |
| NspV | TTCGAA | 1 cut(s) | 125 |
| PaeI | GCATGC | 1 cut(s) | 1565 |
| PagI | TCATGA | 2 cut(s) | 475, 3702 |
| PaqCI | CACCTGC | 1 cut(s) | 3594 |
| PciI | ACATGT | 2 cut(s) | 856, 2682 |
| PciSI | GCTCTTC | 4 cut(s) | 2727, 2739, 3708, 4788 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 147 |
| PctI | GAATGC | 5 cut(s) | 133, 430, 545, 1126, 2564 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1458, 2214, 3888 |
| PflFI | GACNNNGTC | 2 cut(s) | 143, 3760 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 452 |
| PfoI | TCCNGGA | 1 cut(s) | 5166 |
| PinAI | ACCGGT | 1 cut(s) | 1442 |
| Ppu21I | YACGTR | 1 cut(s) | 1700 |
| PpuMI | RGGWCCY | 1 cut(s) | 2367 |
| PscI | ACATGT | 2 cut(s) | 856, 2682 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5376 |
| Psp124BI | GAGCTC | 2 cut(s) | 1014, 4166 |
| Psp5II | RGGWCCY | 1 cut(s) | 2367 |
| Psp6I | CCWGG | 7 cut(s) | 28, 216, 515, 896, 944, 5064, 5166 |
| PspGI | CCWGG | 7 cut(s) | 28, 216, 515, 896, 944, 5064, 5166 |
| PspN4I | GGNNCC | 6 cut(s) | 2368, 2369, 3356, 3872, 4698, 5551 |
| PspPI | GGNCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| PspPPI | RGGWCCY | 1 cut(s) | 2367 |
| PstI | CTGCAG | 4 cut(s) | 2376, 3151, 4377, 4803 |
| PstNI | CAGNNNCTG | 4 cut(s) | 46, 2120, 3833, 4628 |
| PsuI | RGATCY | 4 cut(s) | 952, 3354, 4369, 4429 |
| PsyI | GACNNNGTC | 2 cut(s) | 143, 3760 |
| PvuII | CAGCTG | 3 cut(s) | 421, 1736, 1940 |
| RseI | CAYNNNNRTG | 4 cut(s) | 14, 875, 899, 2229 |
| SacI | GAGCTC | 2 cut(s) | 1014, 4166 |
| SacII | CCGCGG | 1 cut(s) | 594 |
| SapI | GCTCTTC | 4 cut(s) | 2727, 2739, 3708, 4788 |
| Sau96I | GGNCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| ScaI | AGTACT | 1 cut(s) | 1860 |
| SduI | GDGCHC | 4 cut(s) | 1014, 1175, 4166, 4701 |
| SexAI | ACCWGGT | 2 cut(s) | 216, 515 |
| SfcI | CTRYAG | 7 cut(s) | 2372, 3147, 3924, 3959, 4253, 4373, 4799 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 3218 |
| Sfr303I | CCGCGG | 1 cut(s) | 594 |
| SfuI | TTCGAA | 1 cut(s) | 125 |
| SgrBI | CCGCGG | 1 cut(s) | 594 |
| SinI | GGWCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| SmaI | CCCGGG | 1 cut(s) | 4205 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 14, 875, 899, 2229 |
| SmlI | CTYRAG | 8 cut(s) | 1007, 1277, 1517, 1546, 1608, 2525, 3021, 4085 |
| SmoI | CTYRAG | 8 cut(s) | 1007, 1277, 1517, 1546, 1608, 2525, 3021, 4085 |
| SphI | GCATGC | 1 cut(s) | 1565 |
| SspI | AATATT | 3 cut(s) | 1912, 3477, 4747 |
| SstI | GAGCTC | 2 cut(s) | 1014, 4166 |
| StyI | CCWWGG | 9 cut(s) | 117, 654, 796, 1338, 1890, 2430, 2802, 3381, 5121 |
| TaiI | ACGT | 5 cut(s) | 147, 1702, 3363, 4296, 4737 |
| TatI | WGTACW | 2 cut(s) | 853, 1858 |
| TauI | GCSGC | 3 cut(s) | 319, 593, 5273 |
| TseFI | GTSAC | 7 cut(s) | 241, 772, 1204, 3060, 3754, 4677, 4987 |
| Tsp45I | GTSAC | 7 cut(s) | 241, 772, 1204, 3060, 3754, 4677, 4987 |
| TspGWI | ACGGA | 2 cut(s) | 260, 524 |
| TspMI | CCCGGG | 1 cut(s) | 4203 |
| Tth111I | GACNNNGTC | 2 cut(s) | 143, 3760 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 452 |
| Vha464I | CTTAAG | 1 cut(s) | 4085 |
| VpaK11BI | GGWCC | 6 cut(s) | 307, 2367, 3309, 3549, 3664, 3688 |
| XbaI | TCTAGA | 2 cut(s) | 1054, 1477 |
| XceI | RCATGY | 3 cut(s) | 860, 1565, 2686 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 3061, 3319, 3397, 4979 |
| XmaI | CCCGGG | 1 cut(s) | 4203 |
| XmiI | GTMKAC | 3 cut(s) | 2595, 4252, 4968 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1458, 2214, 3888 |
| ZraI | GACGTC | 1 cut(s) | 145 |
| ZrmI | AGTACT | 1 cut(s) | 1860 |
| Zsp2I | ATGCAT | 4 cut(s) | 1563, 2144, 3412, 5404 |