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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24460 AT1G24460 |
| fragaria_vesca | FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 |
| malus_domestica | MD13G1107800.v1.1 MD16G1107700.v1.1 |
| prunus_persica | Prupe.1G238600_v2.0.a1 |
| pyrus_communis | pycom01g03020 pycom13g09320 pycom16g09190 |
| rosa_chinensis | RchiOBHm_Chr4g0431991 |
| rosa_laevigata | RLG00000006869 |
| rosa_multiflora | Rmu_co8237653.1_g000001 Rmu_co8348741.1_g000001 Rmu_sc0003919.1_g000022 Rmu_sc0004965.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00373540 |
| rosa_rugosa | Rorug04G0254100 |
| rosa_samantha | Rh4AG311400 Rh4BG318500 Rh4CG333800 Rh4DG313400 |
| rosa_wichuraiana | Rw4G027070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 4396 |
| Acc16I | TGCGCA | 2 cut(s) | 953, 3812 |
| Acc36I | ACCTGC | 3 cut(s) | 2476, 2772, 4252 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2971 |
| AccI | GTMKAC | 1 cut(s) | 4767 |
| AciI | CCGC | 5 cut(s) | 410, 3516, 3842, 3897, 4723 |
| AclWI | GGATC | 5 cut(s) | 272, 1890, 1961, 3675, 4489 |
| AcoI | YGGCCR | 2 cut(s) | 486, 1131 |
| AcsI | RAATTY | 6 cut(s) | 53, 821, 2876, 2941, 3721, 4704 |
| AcuI | CTGAAG | 9 cut(s) | 731, 759, 1251, 2672, 2721, 2849, 3347, 3816, 3986 |
| AdeI | CACNNNGTG | 1 cut(s) | 2968 |
| AfaI | GTAC | 8 cut(s) | 513, 735, 1146, 2270, 2490, 2676, 3343, 4321 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 343, 2485, 2971, 3446, 4673 |
| AflII | CTTAAG | 1 cut(s) | 83 |
| AflIII | ACRYGT | 3 cut(s) | 46, 142, 1917 |
| AgeI | ACCGGT | 3 cut(s) | 728, 2925, 4448 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4763 |
| AjnI | CCWGG | 4 cut(s) | 230, 2616, 4308, 4410 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1706, 1738, 2520, 2552, 3654, 3686 |
| Alw21I | GWGCWC | 4 cut(s) | 300, 604, 3401, 3578 |
| Alw44I | GTGCAC | 1 cut(s) | 600 |
| AlwI | GGATC | 5 cut(s) | 272, 1890, 1961, 3675, 4489 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3433, 3866 |
| Ama87I | CYCGRG | 1 cut(s) | 4741 |
| AoxI | GGCC | 9 cut(s) | 228, 486, 927, 1131, 1275, 2445, 2884, 3010, 3051 |
| ApaLI | GTGCAC | 1 cut(s) | 600 |
| ApoI | RAATTY | 6 cut(s) | 53, 821, 2876, 2941, 3721, 4704 |
| AsiGI | ACCGGT | 3 cut(s) | 728, 2925, 4448 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 744, 1449, 2225, 2904, 2999, 3105, 4546 |
| AspLEI | GCGC | 3 cut(s) | 461, 954, 3813 |
| AspS9I | GGNCC | 5 cut(s) | 1602, 2544, 2784, 2884, 2923 |
| AsuC2I | CCSGG | 1 cut(s) | 4591 |
| AsuNHI | GCTAGC | 1 cut(s) | 2261 |
| AvaI | CYCGRG | 1 cut(s) | 4741 |
| AvaII | GGWCC | 4 cut(s) | 1602, 2544, 2784, 2923 |
| BaeGI | GKGCMC | 1 cut(s) | 604 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 33, 66, 717, 750 |
| BalI | TGGCCA | 1 cut(s) | 1133 |
| BanII | GRGCYC | 2 cut(s) | 3401, 3945 |
| BbsI | GAAGAC | 3 cut(s) | 1257, 3098, 3852 |
| Bbv12I | GWGCWC | 4 cut(s) | 300, 604, 3401, 3578 |
| BccI | CCATC | 9 cut(s) | 110, 345, 394, 1940, 3002, 4103, 4469, 4566, 4694 |
| BceAI | ACGGC | 2 cut(s) | 473, 3511 |
| BciT130I | CCWGG | 4 cut(s) | 232, 2618, 4310, 4412 |
| BciVI | GTATCC | 4 cut(s) | 34, 688, 2006, 3286 |
| BclI | TGATCA | 1 cut(s) | 97 |
| BcnI | CCSGG | 1 cut(s) | 4591 |
| BfmI | CTRYAG | 7 cut(s) | 123, 1607, 2382, 3096, 3159, 3194, 4043 |
| BfrI | CTTAAG | 1 cut(s) | 83 |
| BfuAI | ACCTGC | 3 cut(s) | 2476, 2772, 4252 |
| BfuI | GTATCC | 4 cut(s) | 34, 688, 2006, 3286 |
| BglII | AGATCT | 1 cut(s) | 238 |
| BmcAI | AGTACT | 1 cut(s) | 1146 |
| Bme1390I | CCNGG | 5 cut(s) | 232, 2618, 4310, 4412, 4591 |
| Bme18I | GGWCC | 4 cut(s) | 1602, 2544, 2784, 2923 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4763 |
| BmeT110I | CYCGRG | 1 cut(s) | 4741 |
| BmgT120I | GGNCC | 5 cut(s) | 1602, 2544, 2784, 2884, 2923 |
| BmiI | GGNNCC | 4 cut(s) | 1603, 1604, 3942, 4801 |
| BmrFI | CCNGG | 5 cut(s) | 232, 2618, 4310, 4412, 4591 |
| BmtI | GCTAGC | 1 cut(s) | 2265 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4626 |
| BpiI | GAAGAC | 3 cut(s) | 1257, 3098, 3852 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1331, 1363 |
| BpmI | CTGGAG | 3 cut(s) | 362, 1329, 3375 |
| Bpu10I | CCTNAGC | 3 cut(s) | 908, 1649, 3408 |
| BpuEI | CTTGAG | 6 cut(s) | 314, 584, 788, 853, 1781, 2241 |
| BpuMI | CCSGG | 1 cut(s) | 4591 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1830, 1854, 3905 |
| BsaI | GGTCTC | 3 cut(s) | 3458, 4206, 4664 |
| BsaJI | CCNNGG | 6 cut(s) | 624, 1347, 1665, 2616, 4308, 4742 |
| BsaWI | WCCGGW | 4 cut(s) | 223, 728, 2925, 4448 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 218, 248, 704, 734, 1302, 1332 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 343, 2485, 2971, 3446, 4673 |
| Bse118I | RCCGGY | 4 cut(s) | 728, 2369, 2925, 4448 |
| Bse3DI | GCAATG | 4 cut(s) | 961, 2645, 2749, 3820 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1830, 1854, 3905 |
| BseBI | CCWGG | 4 cut(s) | 232, 2618, 4310, 4412 |
| BseDI | CCNNGG | 6 cut(s) | 624, 1347, 1665, 2616, 4308, 4742 |
| BseJI | GATNNNNATC | 3 cut(s) | 1830, 1854, 3905 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 343, 2485, 2971, 3446, 4673 |
| BseMI | GCAATG | 4 cut(s) | 961, 2645, 2749, 3820 |
| BseRI | GAGGAG | 5 cut(s) | 725, 1526, 1646, 3945, 4106 |
| BseSI | GKGCMC | 1 cut(s) | 604 |
| BseYI | CCCAGC | 1 cut(s) | 4795 |
| BshFI | GGCC | 9 cut(s) | 230, 488, 929, 1133, 1277, 2447, 2886, 3012, 3053 |
| BshTI | ACCGGT | 3 cut(s) | 728, 2925, 4448 |
| BsiHKAI | GWGCWC | 4 cut(s) | 300, 604, 3401, 3578 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4741 |
| BsiSI | CCGG | 6 cut(s) | 224, 729, 2370, 2926, 4449, 4591 |
| BslFI | GGGAC | 6 cut(s) | 536, 1615, 1701, 1814, 4072, 4251 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 343, 2485, 2971, 3446, 4673 |
| BsmFI | GGGAC | 6 cut(s) | 536, 1615, 1701, 1814, 4072, 4251 |
| BsmI | GAATGC | 2 cut(s) | 694, 1799 |
| BsnI | GGCC | 9 cut(s) | 230, 488, 929, 1133, 1277, 2447, 2886, 3012, 3053 |
| Bso31I | GGTCTC | 3 cut(s) | 3458, 4206, 4664 |
| BsoBI | CYCGRG | 1 cut(s) | 4741 |
| Bsp1286I | GDGCHC | 5 cut(s) | 300, 604, 3401, 3578, 3945 |
| Bsp19I | CCATGG | 1 cut(s) | 1665 |
| BspACI | CCGC | 5 cut(s) | 410, 3516, 3842, 3897, 4723 |
| BspANI | GGCC | 9 cut(s) | 230, 488, 929, 1133, 1277, 2447, 2886, 3012, 3053 |
| BspLI | GGNNCC | 4 cut(s) | 1603, 1604, 3942, 4801 |
| BspMAI | CTGCAG | 4 cut(s) | 1611, 2386, 3100, 4047 |
| BspMI | ACCTGC | 3 cut(s) | 2476, 2772, 4252 |
| BspOI | GCTAGC | 1 cut(s) | 2265 |
| BspPI | GGATC | 5 cut(s) | 272, 1890, 1961, 3675, 4489 |
| BspQI | GCTCTTC | 3 cut(s) | 1974, 2943, 4781 |
| BspTI | CTTAAG | 1 cut(s) | 83 |
| BspTNI | GGTCTC | 3 cut(s) | 3458, 4206, 4664 |
| BsrDI | GCAATG | 4 cut(s) | 961, 2645, 2749, 3820 |
| BsrFI | RCCGGY | 4 cut(s) | 728, 2369, 2925, 4448 |
| BssAI | RCCGGY | 4 cut(s) | 728, 2369, 2925, 4448 |
| BssECI | CCNNGG | 6 cut(s) | 624, 1347, 1665, 2616, 4308, 4742 |
| BssT1I | CCWWGG | 2 cut(s) | 624, 1665 |
| Bst2UI | CCWGG | 4 cut(s) | 232, 2618, 4310, 4412 |
| Bst6I | CTCTTC | 8 cut(s) | 1503, 1974, 2298, 2742, 2943, 3157, 3340, 4781 |
| BstAFI | CTTAAG | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 4 cut(s) | 849, 1032, 2263, 3738 |
| BstDSI | CCRYGG | 1 cut(s) | 1665 |
| BstEII | GGTNACC | 1 cut(s) | 2801 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2483 |
| BstHHI | GCGC | 3 cut(s) | 461, 954, 3813 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 448, 608, 848, 1130, 2375, 2778, 4537, 4780, 4789 |
| BstNI | CCWGG | 4 cut(s) | 232, 2618, 4310, 4412 |
| BstNSI | RCATGY | 4 cut(s) | 146, 851, 1921, 2742 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4626 |
| BstPI | GGTNACC | 1 cut(s) | 2801 |
| BstSCI | CCNGG | 5 cut(s) | 230, 2616, 4308, 4410, 4589 |
| BstSFI | CTRYAG | 7 cut(s) | 123, 1607, 2382, 3096, 3159, 3194, 4043 |
| BstSLI | GKGCMC | 1 cut(s) | 604 |
| BstV2I | GAAGAC | 3 cut(s) | 1257, 3098, 3852 |
| BstX2I | RGATCY | 3 cut(s) | 238, 264, 3667 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2089, 4316 |
| BstYI | RGATCY | 3 cut(s) | 238, 264, 3667 |
| BsuI | GTATCC | 4 cut(s) | 34, 688, 2006, 3286 |
| BsuRI | GGCC | 9 cut(s) | 230, 488, 929, 1133, 1277, 2447, 2886, 3012, 3053 |
| BtgI | CCRYGG | 1 cut(s) | 1665 |
| BtsI | GCAGTG | 3 cut(s) | 270, 1353, 3806 |
| BveI | ACCTGC | 3 cut(s) | 2476, 2772, 4252 |
| Cac8I | GCNNGC | 4 cut(s) | 849, 1032, 2263, 3738 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3433, 3866 |
| CfoI | GCGC | 3 cut(s) | 461, 954, 3813 |
| Cfr10I | RCCGGY | 4 cut(s) | 728, 2369, 2925, 4448 |
| Cfr13I | GGNCC | 5 cut(s) | 1602, 2544, 2784, 2884, 2923 |
| Csp6I | GTAC | 8 cut(s) | 512, 734, 1145, 2269, 2489, 2675, 3342, 4320 |
| CspAI | ACCGGT | 3 cut(s) | 728, 2925, 4448 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3567, 3602 |
| CviQI | GTAC | 8 cut(s) | 512, 734, 1145, 2269, 2489, 2675, 3342, 4320 |
| DraIII | CACNNNGTG | 1 cut(s) | 2968 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4396 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4763 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4396 |
| EaeI | YGGCCR | 2 cut(s) | 486, 1131 |
| Eam1104I | CTCTTC | 8 cut(s) | 1503, 1974, 2298, 2742, 2943, 3157, 3340, 4781 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4763 |
| EarI | CTCTTC | 8 cut(s) | 1503, 1974, 2298, 2742, 2943, 3157, 3340, 4781 |
| EciI | GGCGGA | 1 cut(s) | 3857 |
| Ecl136II | GAGCTC | 1 cut(s) | 3399 |
| Eco130I | CCWWGG | 2 cut(s) | 624, 1665 |
| Eco147I | AGGCCT | 1 cut(s) | 2447 |
| Eco24I | GRGCYC | 2 cut(s) | 3401, 3945 |
| Eco31I | GGTCTC | 3 cut(s) | 3458, 4206, 4664 |
| Eco32I | GATATC | 2 cut(s) | 4461, 4503 |
| Eco47I | GGWCC | 4 cut(s) | 1602, 2544, 2784, 2923 |
| Eco53kI | GAGCTC | 1 cut(s) | 3399 |
| Eco57I | CTGAAG | 9 cut(s) | 731, 759, 1251, 2672, 2721, 2849, 3347, 3816, 3986 |
| Eco88I | CYCGRG | 1 cut(s) | 4741 |
| Eco91I | GGTNACC | 1 cut(s) | 2801 |
| EcoICRI | GAGCTC | 1 cut(s) | 3399 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2483 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1602, 2884 |
| EcoO65I | GGTNACC | 1 cut(s) | 2801 |
| EcoRI | GAATTC | 2 cut(s) | 821, 3721 |
| EcoRII | CCWGG | 4 cut(s) | 230, 2616, 4308, 4410 |
| EcoRV | GATATC | 2 cut(s) | 4461, 4503 |
| EcoT14I | CCWWGG | 2 cut(s) | 624, 1665 |
| EcoT22I | ATGCAT | 4 cut(s) | 849, 1379, 2647, 4654 |
| EcoT38I | GRGCYC | 2 cut(s) | 3401, 3945 |
| ErhI | CCWWGG | 2 cut(s) | 624, 1665 |
| FaqI | GGGAC | 6 cut(s) | 536, 1615, 1701, 1814, 4072, 4251 |
| FauI | CCCGC | 2 cut(s) | 3890, 4716 |
| FbaI | TGATCA | 1 cut(s) | 97 |
| FblI | GTMKAC | 1 cut(s) | 4767 |
| FriOI | GRGCYC | 2 cut(s) | 3401, 3945 |
| FspI | TGCGCA | 2 cut(s) | 953, 3812 |
| GlaI | GCGC | 3 cut(s) | 460, 953, 3812 |
| GsaI | CCCAGC | 1 cut(s) | 4799 |
| GsuI | CTGGAG | 3 cut(s) | 362, 1329, 3375 |
| HaeIII | GGCC | 9 cut(s) | 230, 488, 929, 1133, 1277, 2447, 2886, 3012, 3053 |
| HapII | CCGG | 6 cut(s) | 224, 729, 2370, 2926, 4449, 4591 |
| HhaI | GCGC | 3 cut(s) | 461, 954, 3813 |
| Hin6I | GCGC | 3 cut(s) | 459, 952, 3811 |
| HinP1I | GCGC | 3 cut(s) | 459, 952, 3811 |
| HincII | GTYRAC | 3 cut(s) | 180, 621, 4050 |
| HindII | GTYRAC | 3 cut(s) | 180, 621, 4050 |
| HindIII | AAGCTT | 2 cut(s) | 476, 3552 |
| HpaI | GTTAAC | 1 cut(s) | 621 |
| HpaII | CCGG | 6 cut(s) | 224, 729, 2370, 2926, 4449, 4591 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 3978 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 448, 608, 848, 1130, 2375, 2778, 4537, 4780, 4789 |
| HpySE526I | ACGT | 2 cut(s) | 48, 3978 |
| HspAI | GCGC | 3 cut(s) | 459, 952, 3811 |
| KflI | GGGWCCC | 1 cut(s) | 1602 |
| Ksp22I | TGATCA | 1 cut(s) | 97 |
| KspAI | GTTAAC | 1 cut(s) | 621 |
| LguI | GCTCTTC | 3 cut(s) | 1974, 2943, 4781 |
| LmnI | GCTCC | 3 cut(s) | 2360, 3940, 4419 |
| MaeII | ACGT | 2 cut(s) | 48, 3978 |
| MfeI | CAATTG | 6 cut(s) | 852, 1778, 2238, 3600, 4082, 4566 |
| MflI | RGATCY | 3 cut(s) | 238, 264, 3667 |
| MhlI | GDGCHC | 5 cut(s) | 300, 604, 3401, 3578, 3945 |
| MlsI | TGGCCA | 1 cut(s) | 1133 |
| MluNI | TGGCCA | 1 cut(s) | 1133 |
| MlyI | GAGTC | 7 cut(s) | 239, 1510, 2261, 3248, 3842, 3929, 4744 |
| MmeI | TCCRAC | 2 cut(s) | 2952, 3675 |
| Mox20I | TGGCCA | 1 cut(s) | 1133 |
| Mph1103I | ATGCAT | 4 cut(s) | 849, 1379, 2647, 4654 |
| MroXI | GAANNNNTTC | 7 cut(s) | 744, 1449, 2225, 2904, 2999, 3105, 4546 |
| MscI | TGGCCA | 1 cut(s) | 1133 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1464 |
| Msp20I | TGGCCA | 1 cut(s) | 1133 |
| MspA1I | CMGCKG | 2 cut(s) | 1022, 3897 |
| MspCI | CTTAAG | 1 cut(s) | 83 |
| MspI | CCGG | 6 cut(s) | 224, 729, 2370, 2926, 4449, 4591 |
| MspR9I | CCNGG | 5 cut(s) | 232, 2618, 4310, 4412, 4591 |
| MunI | CAATTG | 6 cut(s) | 852, 1778, 2238, 3600, 4082, 4566 |
| Mva1269I | GAATGC | 2 cut(s) | 694, 1799 |
| MvaI | CCWGG | 4 cut(s) | 232, 2618, 4310, 4412 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 448, 608, 848, 1130, 2375, 2778, 4537, 4780, 4789 |
| NciI | CCSGG | 1 cut(s) | 4591 |
| NcoI | CCATGG | 1 cut(s) | 1665 |
| NheI | GCTAGC | 1 cut(s) | 2261 |
| NlaIV | GGNNCC | 4 cut(s) | 1603, 1604, 3942, 4801 |
| NmuCI | GTSAC | 7 cut(s) | 58, 490, 2295, 2801, 2989, 3921, 4231 |
| NsbI | TGCGCA | 2 cut(s) | 953, 3812 |
| NsiI | ATGCAT | 4 cut(s) | 849, 1379, 2647, 4654 |
| NspI | RCATGY | 4 cut(s) | 146, 851, 1921, 2742 |
| PaeI | GCATGC | 1 cut(s) | 851 |
| PceI | AGGCCT | 1 cut(s) | 2447 |
| PciI | ACATGT | 2 cut(s) | 142, 1917 |
| PciSI | GCTCTTC | 3 cut(s) | 1974, 2943, 4781 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1355, 4761 |
| PctI | GAATGC | 2 cut(s) | 694, 1799 |
| PdmI | GAANNNNTTC | 7 cut(s) | 744, 1449, 2225, 2904, 2999, 3105, 4546 |
| PfeI | GAWTC | 9 cut(s) | 914, 1010, 1415, 1937, 2474, 2589, 4066, 4283, 4583 |
| PflFI | GACNNNGTC | 1 cut(s) | 2995 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2971 |
| PfoI | TCCNGGA | 1 cut(s) | 4410 |
| PinAI | ACCGGT | 3 cut(s) | 728, 2925, 4448 |
| PleI | GAGTC | 7 cut(s) | 239, 1510, 2260, 3247, 3842, 3928, 4743 |
| PpsI | GAGTC | 7 cut(s) | 239, 1510, 2260, 3247, 3842, 3928, 4743 |
| PpuMI | RGGWCCY | 1 cut(s) | 1602 |
| PscI | ACATGT | 2 cut(s) | 142, 1917 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4626 |
| Psp124BI | GAGCTC | 1 cut(s) | 3401 |
| Psp5II | RGGWCCY | 1 cut(s) | 1602 |
| Psp6I | CCWGG | 4 cut(s) | 230, 2616, 4308, 4410 |
| PspEI | GGTNACC | 1 cut(s) | 2801 |
| PspFI | CCCAGC | 1 cut(s) | 4795 |
| PspGI | CCWGG | 4 cut(s) | 230, 2616, 4308, 4410 |
| PspN4I | GGNNCC | 4 cut(s) | 1603, 1604, 3942, 4801 |
| PspPI | GGNCC | 5 cut(s) | 1602, 2544, 2784, 2884, 2923 |
| PspPPI | RGGWCCY | 1 cut(s) | 1602 |
| PstI | CTGCAG | 4 cut(s) | 1611, 2386, 3100, 4047 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3433, 3866 |
| PsuI | RGATCY | 3 cut(s) | 238, 264, 3667 |
| PsyI | GACNNNGTC | 1 cut(s) | 2995 |
| PvuII | CAGCTG | 1 cut(s) | 1022 |
| RsaI | GTAC | 8 cut(s) | 513, 735, 1146, 2270, 2490, 2676, 3343, 4321 |
| RsaNI | GTAC | 8 cut(s) | 512, 734, 1145, 2269, 2489, 2675, 3342, 4320 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1464 |
| SacI | GAGCTC | 1 cut(s) | 3401 |
| SapI | GCTCTTC | 3 cut(s) | 1974, 2943, 4781 |
| Sau96I | GGNCC | 5 cut(s) | 1602, 2544, 2784, 2884, 2923 |
| ScaI | AGTACT | 1 cut(s) | 1146 |
| SchI | GAGTC | 7 cut(s) | 239, 1510, 2261, 3248, 3842, 3929, 4744 |
| ScrFI | CCNGG | 5 cut(s) | 232, 2618, 4310, 4412, 4591 |
| SduI | GDGCHC | 5 cut(s) | 300, 604, 3401, 3578, 3945 |
| SfcI | CTRYAG | 7 cut(s) | 123, 1607, 2382, 3096, 3159, 3194, 4043 |
| SinI | GGWCC | 4 cut(s) | 1602, 2544, 2784, 2923 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1464 |
| SmlI | CTYRAG | 7 cut(s) | 83, 293, 563, 803, 832, 1760, 2256 |
| SmoI | CTYRAG | 7 cut(s) | 83, 293, 563, 803, 832, 1760, 2256 |
| SphI | GCATGC | 1 cut(s) | 851 |
| SseBI | AGGCCT | 1 cut(s) | 2447 |
| SsiI | CCGC | 5 cut(s) | 410, 3516, 3842, 3897, 4723 |
| SspI | AATATT | 2 cut(s) | 2712, 3124 |
| SstI | GAGCTC | 1 cut(s) | 3401 |
| StuI | AGGCCT | 1 cut(s) | 2447 |
| StyD4I | CCNGG | 5 cut(s) | 230, 2616, 4308, 4410, 4589 |
| StyI | CCWWGG | 2 cut(s) | 624, 1665 |
| TaiI | ACGT | 2 cut(s) | 51, 3981 |
| TatI | WGTACW | 3 cut(s) | 1144, 2674, 3341 |
| TauI | GCSGC | 1 cut(s) | 413 |
| TfiI | GAWTC | 9 cut(s) | 914, 1010, 1415, 1937, 2474, 2589, 4066, 4283, 4583 |
| TseFI | GTSAC | 7 cut(s) | 58, 490, 2295, 2801, 2989, 3921, 4231 |
| Tsp45I | GTSAC | 7 cut(s) | 58, 490, 2295, 2801, 2989, 3921, 4231 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2995 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2971 |
| Vha464I | CTTAAG | 1 cut(s) | 83 |
| VneI | GTGCAC | 1 cut(s) | 600 |
| VpaK11BI | GGWCC | 4 cut(s) | 1602, 2544, 2784, 2923 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2483 |
| XapI | RAATTY | 6 cut(s) | 53, 821, 2876, 2941, 3721, 4704 |
| XbaI | TCTAGA | 1 cut(s) | 763 |
| XceI | RCATGY | 4 cut(s) | 146, 851, 1921, 2742 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2632, 4223 |
| XmiI | GTMKAC | 1 cut(s) | 4767 |
| XmnI | GAANNNNTTC | 7 cut(s) | 744, 1449, 2225, 2904, 2999, 3105, 4546 |
| ZrmI | AGTACT | 1 cut(s) | 1146 |
| Zsp2I | ATGCAT | 4 cut(s) | 849, 1379, 2647, 4654 |