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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24460 AT1G24460 |
| fragaria_vesca | FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 |
| malus_domestica | MD13G1107800.v1.1 MD16G1107700.v1.1 |
| prunus_persica | Prupe.1G238600_v2.0.a1 |
| pyrus_communis | pycom01g03020 pycom13g09320 pycom16g09190 |
| rosa_chinensis | RchiOBHm_Chr4g0431991 |
| rosa_laevigata | RLG00000006869 |
| rosa_multiflora | Rmu_co8237653.1_g000001 Rmu_co8348741.1_g000001 Rmu_sc0003919.1_g000022 Rmu_sc0004965.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00373540 |
| rosa_rugosa | Rorug04G0254100 |
| rosa_samantha | Rh4AG311400 Rh4BG318500 Rh4CG333800 Rh4DG313400 |
| rosa_wichuraiana | Rw4G027070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 3937, 4321 |
| AatII | GACGTC | 1 cut(s) | 78 |
| Acc16I | TGCGCA | 1 cut(s) | 6020 |
| Acc36I | ACCTGC | 1 cut(s) | 5728 |
| AccBSI | CCGCTC | 2 cut(s) | 2611, 3181 |
| AccI | GTMKAC | 2 cut(s) | 1414, 5075 |
| AccII | CGCG | 2 cut(s) | 4596, 5072 |
| AccIII | TCCGGA | 1 cut(s) | 31 |
| AciI | CCGC | 7 cut(s) | 348, 1585, 2611, 3181, 3629, 5070, 5180 |
| AclI | AACGTT | 2 cut(s) | 193, 3975 |
| AclWI | GGATC | 7 cut(s) | 540, 3369, 4014, 4383, 5154, 5977, 6059 |
| AcoI | YGGCCR | 2 cut(s) | 22, 5067 |
| AcuI | CTGAAG | 8 cut(s) | 188, 1238, 1314, 1896, 2730, 3675, 4197, 6114 |
| AcyI | GRCGYC | 2 cut(s) | 75, 6246 |
| AdeI | CACNNNGTG | 1 cut(s) | 4685 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 31, 335, 592, 785, 6161 |
| AflIII | ACRYGT | 4 cut(s) | 147, 697, 1775, 2018 |
| AgeI | ACCGGT | 1 cut(s) | 85 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 130, 5695 |
| AhlI | ACTAGT | 2 cut(s) | 215, 691 |
| AjiI | CACGTC | 1 cut(s) | 714 |
| AjnI | CCWGG | 4 cut(s) | 494, 3732, 4231, 5898 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 134, 166 |
| Alw21I | GWGCWC | 6 cut(s) | 510, 855, 1159, 1805, 4272, 4713 |
| AlwI | GGATC | 7 cut(s) | 540, 3369, 4014, 4383, 5154, 5977, 6059 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2264, 2834 |
| Aor13HI | TCCGGA | 1 cut(s) | 31 |
| AoxI | GGCC | 5 cut(s) | 22, 492, 3969, 5067, 6115 |
| AsiGI | ACCGGT | 1 cut(s) | 85 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 1299, 2358, 2601, 2620, 2928, 5119, 6034 |
| AspLEI | GCGC | 2 cut(s) | 4596, 6021 |
| AspS9I | GGNCC | 3 cut(s) | 2511, 3081, 4260 |
| AsuC2I | CCSGG | 3 cut(s) | 739, 787, 4949 |
| AsuII | TTCGAA | 2 cut(s) | 153, 295 |
| AsuNHI | GCTAGC | 1 cut(s) | 3737 |
| AvaII | GGWCC | 3 cut(s) | 2511, 3081, 4260 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1272, 1305, 3481, 3514 |
| BanII | GRGCYC | 4 cut(s) | 510, 855, 1805, 4272 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1311, 1343, 1446, 1478, 3882, 3914 |
| BbsI | GAAGAC | 4 cut(s) | 884, 2736, 4574, 5328 |
| Bbv12I | GWGCWC | 6 cut(s) | 510, 855, 1159, 1805, 4272, 4713 |
| BbvCI | CCTCAGC | 2 cut(s) | 3513, 4524 |
| BceAI | ACGGC | 1 cut(s) | 627 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3740, 3774, 5681, 5715 |
| BciT130I | CCWGG | 4 cut(s) | 496, 3734, 4233, 5900 |
| BciVI | GTATCC | 2 cut(s) | 205, 3482 |
| BclI | TGATCA | 2 cut(s) | 319, 793 |
| BcnI | CCSGG | 3 cut(s) | 739, 787, 4949 |
| BcuI | ACTAGT | 2 cut(s) | 215, 691 |
| BfmI | CTRYAG | 8 cut(s) | 42, 48, 2175, 2516, 3086, 3759, 3858, 5519 |
| BfuAI | ACCTGC | 1 cut(s) | 5728 |
| BfuI | GTATCC | 2 cut(s) | 205, 3482 |
| BlpI | GCTNAGC | 3 cut(s) | 4035, 4425, 5883 |
| BmcAI | AGTACT | 1 cut(s) | 4446 |
| Bme1390I | CCNGG | 7 cut(s) | 496, 739, 787, 3734, 4233, 4949, 5900 |
| Bme18I | GGWCC | 3 cut(s) | 2511, 3081, 4260 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 130, 5695 |
| BmgBI | CACGTC | 1 cut(s) | 714 |
| BmgT120I | GGNCC | 3 cut(s) | 2511, 3081, 4260 |
| BmiI | GGNNCC | 5 cut(s) | 2512, 2513, 3082, 3083, 6037 |
| BmrFI | CCNGG | 7 cut(s) | 496, 739, 787, 3734, 4233, 4949, 5900 |
| BmtI | GCTAGC | 1 cut(s) | 3741 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5719 |
| BpiI | GAAGAC | 4 cut(s) | 884, 2736, 4574, 5328 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1721, 1753, 1964, 1996 |
| BpmI | CTGGAG | 4 cut(s) | 1013, 1731, 3404, 4469 |
| Bpu10I | CCTNAGC | 6 cut(s) | 305, 638, 3233, 3513, 4524, 5784 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 4035, 4425, 5883 |
| Bpu14I | TTCGAA | 2 cut(s) | 153, 295 |
| BpuEI | CTTGAG | 8 cut(s) | 869, 1139, 1343, 1434, 3260, 4784, 4913, 5853 |
| BpuMI | CCSGG | 3 cut(s) | 739, 787, 4949 |
| Bsa29I | ATCGAT | 2 cut(s) | 5460, 6063 |
| BsaAI | YACGTR | 2 cut(s) | 1508, 2377 |
| BsaBI | GATNNNNATC | 3 cut(s) | 4374, 5381, 6063 |
| BsaHI | GRCGYC | 2 cut(s) | 75, 6246 |
| BsaI | GGTCTC | 5 cut(s) | 317, 554, 776, 4392, 4937 |
| BsaJI | CCNNGG | 9 cut(s) | 99, 422, 495, 2574, 3144, 3732, 4947, 5841, 6230 |
| BsaWI | WCCGGW | 2 cut(s) | 31, 85 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 134, 164, 464, 494 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 31, 335, 592, 785, 6161 |
| Bse118I | RCCGGY | 1 cut(s) | 85 |
| Bse3DI | GCAATG | 3 cut(s) | 1095, 1755, 6249 |
| Bse8I | GATNNNNATC | 3 cut(s) | 4374, 5381, 6063 |
| BseAI | TCCGGA | 1 cut(s) | 31 |
| BseBI | CCWGG | 4 cut(s) | 496, 3734, 4233, 5900 |
| BseCI | ATCGAT | 2 cut(s) | 5460, 6063 |
| BseDI | CCNNGG | 9 cut(s) | 99, 422, 495, 2574, 3144, 3732, 4947, 5841, 6230 |
| BseJI | GATNNNNATC | 3 cut(s) | 4374, 5381, 6063 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 31, 335, 592, 785, 6161 |
| BseMI | GCAATG | 3 cut(s) | 1095, 1755, 6249 |
| BseRI | GAGGAG | 4 cut(s) | 2435, 3005, 4196, 5582 |
| BsgI | GTGCAG | 2 cut(s) | 1067, 4557 |
| Bsh1236I | CGCG | 2 cut(s) | 4596, 5072 |
| BshFI | GGCC | 5 cut(s) | 24, 494, 3971, 5069, 6117 |
| BshTI | ACCGGT | 1 cut(s) | 85 |
| BshVI | ATCGAT | 2 cut(s) | 5460, 6063 |
| BsiHKAI | GWGCWC | 6 cut(s) | 510, 855, 1159, 1805, 4272, 4713 |
| BsiSI | CCGG | 6 cut(s) | 21, 32, 86, 739, 786, 4949 |
| BslFI | GGGAC | 4 cut(s) | 2497, 3067, 3293, 5727 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 31, 335, 592, 785, 6161 |
| BsmBI | CGTCTC | 1 cut(s) | 5682 |
| BsmFI | GGGAC | 4 cut(s) | 2497, 3067, 3293, 5727 |
| BsmI | GAATGC | 7 cut(s) | 967, 1924, 2286, 2554, 2856, 3278, 3315 |
| BsnI | GGCC | 5 cut(s) | 24, 494, 3971, 5069, 6117 |
| Bso31I | GGTCTC | 5 cut(s) | 317, 554, 776, 4392, 4937 |
| Bsp119I | TTCGAA | 2 cut(s) | 153, 295 |
| Bsp1286I | GDGCHC | 6 cut(s) | 510, 855, 1159, 1805, 4272, 4713 |
| Bsp13I | TCCGGA | 1 cut(s) | 31 |
| Bsp1407I | TGTACA | 1 cut(s) | 2943 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 4035, 4425, 5883 |
| Bsp19I | CCATGG | 1 cut(s) | 3144 |
| BspACI | CCGC | 7 cut(s) | 348, 1585, 2611, 3181, 3629, 5070, 5180 |
| BspANI | GGCC | 5 cut(s) | 24, 494, 3971, 5069, 6117 |
| BspDI | ATCGAT | 2 cut(s) | 5460, 6063 |
| BspEI | TCCGGA | 1 cut(s) | 31 |
| BspFNI | CGCG | 2 cut(s) | 4596, 5072 |
| BspHI | TCATGA | 1 cut(s) | 3505 |
| BspLI | GGNNCC | 5 cut(s) | 2512, 2513, 3082, 3083, 6037 |
| BspMAI | CTGCAG | 5 cut(s) | 46, 52, 2179, 3763, 3862 |
| BspMI | ACCTGC | 1 cut(s) | 5728 |
| BspOI | GCTAGC | 1 cut(s) | 3741 |
| BspPI | GGATC | 7 cut(s) | 540, 3369, 4014, 4383, 5154, 5977, 6059 |
| BspQI | GCTCTTC | 3 cut(s) | 5, 1290, 5508 |
| BspT104I | TTCGAA | 2 cut(s) | 153, 295 |
| BspTNI | GGTCTC | 5 cut(s) | 317, 554, 776, 4392, 4937 |
| BsrBI | CCGCTC | 2 cut(s) | 2611, 3181 |
| BsrDI | GCAATG | 3 cut(s) | 1095, 1755, 6249 |
| BsrFI | RCCGGY | 1 cut(s) | 85 |
| BsrGI | TGTACA | 1 cut(s) | 2943 |
| BssAI | RCCGGY | 1 cut(s) | 85 |
| BssECI | CCNNGG | 9 cut(s) | 99, 422, 495, 2574, 3144, 3732, 4947, 5841, 6230 |
| BssNI | GRCGYC | 2 cut(s) | 75, 6246 |
| BssT1I | CCWWGG | 3 cut(s) | 3144, 5841, 6230 |
| Bst2UI | CCWGG | 4 cut(s) | 496, 3734, 4233, 5900 |
| BstACI | GRCGYC | 2 cut(s) | 75, 6246 |
| BstAUI | TGTACA | 1 cut(s) | 2943 |
| BstBAI | YACGTR | 2 cut(s) | 1508, 2377 |
| BstBI | TTCGAA | 2 cut(s) | 153, 295 |
| BstDSI | CCRYGG | 3 cut(s) | 422, 2574, 3144 |
| BstEII | GGTNACC | 1 cut(s) | 4277 |
| BstFNI | CGCG | 2 cut(s) | 4596, 5072 |
| BstHHI | GCGC | 2 cut(s) | 4596, 6021 |
| BstNI | CCWGG | 4 cut(s) | 496, 3734, 4233, 5900 |
| BstNSI | RCATGY | 6 cut(s) | 151, 701, 1779, 2022, 3400, 4717 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5719 |
| BstPI | GGTNACC | 1 cut(s) | 4277 |
| BstSCI | CCNGG | 7 cut(s) | 494, 737, 785, 3732, 4231, 4947, 5898 |
| BstSFI | CTRYAG | 8 cut(s) | 42, 48, 2175, 2516, 3086, 3759, 3858, 5519 |
| BstSNI | TACGTA | 2 cut(s) | 1508, 2377 |
| BstUI | CGCG | 2 cut(s) | 4596, 5072 |
| BstV2I | GAAGAC | 4 cut(s) | 884, 2736, 4574, 5328 |
| BstX2I | RGATCY | 3 cut(s) | 4019, 4375, 5146 |
| BstYI | RGATCY | 3 cut(s) | 4019, 4375, 5146 |
| Bsu15I | ATCGAT | 2 cut(s) | 5460, 6063 |
| BsuI | GTATCC | 2 cut(s) | 205, 3482 |
| BsuRI | GGCC | 5 cut(s) | 24, 494, 3971, 5069, 6117 |
| BsuTUI | ATCGAT | 2 cut(s) | 5460, 6063 |
| BtgI | CCRYGG | 3 cut(s) | 422, 2574, 3144 |
| BtrI | CACGTC | 1 cut(s) | 714 |
| BtsI | GCAGTG | 7 cut(s) | 1217, 2053, 2262, 2317, 2832, 2887, 3855 |
| BveI | ACCTGC | 1 cut(s) | 5728 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2264, 2834 |
| CciI | TCATGA | 1 cut(s) | 3505 |
| CfoI | GCGC | 2 cut(s) | 4596, 6021 |
| Cfr10I | RCCGGY | 1 cut(s) | 85 |
| Cfr13I | GGNCC | 3 cut(s) | 2511, 3081, 4260 |
| ClaI | ATCGAT | 2 cut(s) | 5460, 6063 |
| CseI | GACGC | 7 cut(s) | 134, 1889, 2153, 2723, 5061, 5224, 6235 |
| CspAI | ACCGGT | 1 cut(s) | 85 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 1750, 1785, 2257, 2292, 2827, 2862, 5046, 5081 |
| DraI | TTTAAA | 1 cut(s) | 4726 |
| DraIII | CACNNNGTG | 1 cut(s) | 4685 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 3937, 4321 |
| DriI | GACNNNNNGTC | 2 cut(s) | 130, 5695 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 3937, 4321 |
| EaeI | YGGCCR | 2 cut(s) | 22, 5067 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 130, 5695 |
| EciI | GGCGGA | 2 cut(s) | 3644, 5195 |
| Ecl136II | GAGCTC | 4 cut(s) | 508, 853, 1803, 4270 |
| Eco105I | TACGTA | 2 cut(s) | 1508, 2377 |
| Eco130I | CCWWGG | 3 cut(s) | 3144, 5841, 6230 |
| Eco24I | GRGCYC | 4 cut(s) | 510, 855, 1805, 4272 |
| Eco31I | GGTCTC | 5 cut(s) | 317, 554, 776, 4392, 4937 |
| Eco32I | GATATC | 4 cut(s) | 172, 5949, 5991, 6061 |
| Eco47I | GGWCC | 3 cut(s) | 2511, 3081, 4260 |
| Eco53kI | GAGCTC | 4 cut(s) | 508, 853, 1803, 4270 |
| Eco57I | CTGAAG | 8 cut(s) | 188, 1238, 1314, 1896, 2730, 3675, 4197, 6114 |
| Eco91I | GGTNACC | 1 cut(s) | 4277 |
| EcoICRI | GAGCTC | 4 cut(s) | 508, 853, 1803, 4270 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2511, 3081, 4260 |
| EcoO65I | GGTNACC | 1 cut(s) | 4277 |
| EcoRI | GAATTC | 2 cut(s) | 297, 1376 |
| EcoRII | CCWGG | 4 cut(s) | 494, 3732, 4231, 5898 |
| EcoRV | GATATC | 4 cut(s) | 172, 5949, 5991, 6061 |
| EcoT14I | CCWWGG | 3 cut(s) | 3144, 5841, 6230 |
| EcoT22I | ATGCAT | 5 cut(s) | 601, 2288, 2858, 4216, 6142 |
| EcoT38I | GRGCYC | 4 cut(s) | 510, 855, 1805, 4272 |
| ErhI | CCWWGG | 3 cut(s) | 3144, 5841, 6230 |
| Esp3I | CGTCTC | 1 cut(s) | 5682 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1215, 1247, 3321, 3353, 3939, 3971, 5432, 5464 |
| FaqI | GGGAC | 4 cut(s) | 2497, 3067, 3293, 5727 |
| FauI | CCCGC | 3 cut(s) | 1578, 2604, 3174 |
| FauNDI | CATATG | 1 cut(s) | 4462 |
| FbaI | TGATCA | 2 cut(s) | 319, 793 |
| FblI | GTMKAC | 2 cut(s) | 1414, 5075 |
| FriOI | GRGCYC | 4 cut(s) | 510, 855, 1805, 4272 |
| FspAI | RTGCGCAY | 1 cut(s) | 6020 |
| FspI | TGCGCA | 1 cut(s) | 6020 |
| GlaI | GCGC | 2 cut(s) | 4595, 6020 |
| GsuI | CTGGAG | 4 cut(s) | 1013, 1731, 3404, 4469 |
| HaeIII | GGCC | 5 cut(s) | 24, 494, 3971, 5069, 6117 |
| HapII | CCGG | 6 cut(s) | 21, 32, 86, 739, 786, 4949 |
| HgaI | GACGC | 7 cut(s) | 134, 1889, 2153, 2723, 5061, 5224, 6235 |
| HhaI | GCGC | 2 cut(s) | 4596, 6021 |
| Hin1I | GRCGYC | 2 cut(s) | 75, 6246 |
| Hin6I | GCGC | 2 cut(s) | 4594, 6019 |
| HinP1I | GCGC | 2 cut(s) | 4594, 6019 |
| HincII | GTYRAC | 5 cut(s) | 656, 1560, 2067, 2637, 5526 |
| HindII | GTYRAC | 5 cut(s) | 656, 1560, 2067, 2637, 5526 |
| HindIII | AAGCTT | 3 cut(s) | 1031, 4079, 5031 |
| HpaI | GTTAAC | 2 cut(s) | 1560, 2637 |
| HpaII | CCGG | 6 cut(s) | 21, 32, 86, 739, 786, 4949 |
| Hpy99I | CGWCG | 3 cut(s) | 77, 80, 170 |
| HpyCH4IV | ACGT | 7 cut(s) | 75, 193, 713, 1507, 2006, 2376, 3975 |
| HpySE526I | ACGT | 7 cut(s) | 75, 193, 713, 1507, 2006, 2376, 3975 |
| Hsp92I | GRCGYC | 2 cut(s) | 75, 6246 |
| HspAI | GCGC | 2 cut(s) | 4594, 6019 |
| KflI | GGGWCCC | 2 cut(s) | 2511, 3081 |
| Kpn2I | TCCGGA | 1 cut(s) | 31 |
| Ksp22I | TGATCA | 2 cut(s) | 319, 793 |
| KspAI | GTTAAC | 2 cut(s) | 1560, 2637 |
| LguI | GCTCTTC | 3 cut(s) | 5, 1290, 5508 |
| LmnI | GCTCC | 6 cut(s) | 988, 994, 1897, 2344, 2914, 5907 |
| MaeII | ACGT | 7 cut(s) | 75, 193, 713, 1507, 2006, 2376, 3975 |
| MbiI | CCGCTC | 2 cut(s) | 2611, 3181 |
| MfeI | CAATTG | 3 cut(s) | 3429, 5079, 6054 |
| MflI | RGATCY | 3 cut(s) | 4019, 4375, 5146 |
| MhlI | GDGCHC | 6 cut(s) | 510, 855, 1159, 1805, 4272, 4713 |
| Mph1103I | ATGCAT | 5 cut(s) | 601, 2288, 2858, 4216, 6142 |
| MroI | TCCGGA | 1 cut(s) | 31 |
| MroXI | GAANNNNTTC | 7 cut(s) | 1299, 2358, 2601, 2620, 2928, 5119, 6034 |
| MslI | CAYNNNNRTG | 2 cut(s) | 716, 740 |
| MspA1I | CMGCKG | 5 cut(s) | 47, 208, 1577, 2084, 2654 |
| MspI | CCGG | 6 cut(s) | 21, 32, 86, 739, 786, 4949 |
| MspR9I | CCNGG | 7 cut(s) | 496, 739, 787, 3734, 4233, 4949, 5900 |
| MunI | CAATTG | 3 cut(s) | 3429, 5079, 6054 |
| Mva1269I | GAATGC | 7 cut(s) | 967, 1924, 2286, 2554, 2856, 3278, 3315 |
| MvaI | CCWGG | 4 cut(s) | 496, 3734, 4233, 5900 |
| MvnI | CGCG | 2 cut(s) | 4596, 5072 |
| NciI | CCSGG | 3 cut(s) | 739, 787, 4949 |
| NcoI | CCATGG | 1 cut(s) | 3144 |
| NdeI | CATATG | 1 cut(s) | 4462 |
| NheI | GCTAGC | 1 cut(s) | 3737 |
| NlaIV | GGNNCC | 5 cut(s) | 2512, 2513, 3082, 3083, 6037 |
| NmuCI | GTSAC | 6 cut(s) | 581, 3642, 3939, 4277, 4465, 4608 |
| NsbI | TGCGCA | 1 cut(s) | 6020 |
| NsiI | ATGCAT | 5 cut(s) | 601, 2288, 2858, 4216, 6142 |
| NspI | RCATGY | 6 cut(s) | 151, 701, 1779, 2022, 3400, 4717 |
| NspV | TTCGAA | 2 cut(s) | 153, 295 |
| PagI | TCATGA | 1 cut(s) | 3505 |
| PciI | ACATGT | 4 cut(s) | 147, 697, 1775, 2018 |
| PciSI | GCTCTTC | 3 cut(s) | 5, 1290, 5508 |
| PctI | GAATGC | 7 cut(s) | 967, 1924, 2286, 2554, 2856, 3278, 3315 |
| PdmI | GAANNNNTTC | 7 cut(s) | 1299, 2358, 2601, 2620, 2928, 5119, 6034 |
| PflFI | GACNNNGTC | 1 cut(s) | 888 |
| PfoI | TCCNGGA | 1 cut(s) | 5898 |
| PinAI | ACCGGT | 1 cut(s) | 85 |
| Ppu21I | YACGTR | 2 cut(s) | 1508, 2377 |
| PpuMI | RGGWCCY | 3 cut(s) | 2511, 3081, 4260 |
| PscI | ACATGT | 4 cut(s) | 147, 697, 1775, 2018 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5719 |
| Psp124BI | GAGCTC | 4 cut(s) | 510, 855, 1805, 4272 |
| Psp1406I | AACGTT | 2 cut(s) | 193, 3975 |
| Psp5II | RGGWCCY | 3 cut(s) | 2511, 3081, 4260 |
| Psp6I | CCWGG | 4 cut(s) | 494, 3732, 4231, 5898 |
| PspEI | GGTNACC | 1 cut(s) | 4277 |
| PspGI | CCWGG | 4 cut(s) | 494, 3732, 4231, 5898 |
| PspN4I | GGNNCC | 5 cut(s) | 2512, 2513, 3082, 3083, 6037 |
| PspPI | GGNCC | 3 cut(s) | 2511, 3081, 4260 |
| PspPPI | RGGWCCY | 3 cut(s) | 2511, 3081, 4260 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3363, 3395 |
| PstI | CTGCAG | 5 cut(s) | 46, 52, 2179, 3763, 3862 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2264, 2834 |
| PsuI | RGATCY | 3 cut(s) | 4019, 4375, 5146 |
| PsyI | GACNNNGTC | 1 cut(s) | 888 |
| PvuII | CAGCTG | 5 cut(s) | 47, 208, 1577, 2084, 2654 |
| RseI | CAYNNNNRTG | 2 cut(s) | 716, 740 |
| SacI | GAGCTC | 4 cut(s) | 510, 855, 1805, 4272 |
| SapI | GCTCTTC | 3 cut(s) | 5, 1290, 5508 |
| Sau96I | GGNCC | 3 cut(s) | 2511, 3081, 4260 |
| ScaI | AGTACT | 1 cut(s) | 4446 |
| ScrFI | CCNGG | 7 cut(s) | 496, 739, 787, 3734, 4233, 4949, 5900 |
| SduI | GDGCHC | 6 cut(s) | 510, 855, 1159, 1805, 4272, 4713 |
| SfcI | CTRYAG | 8 cut(s) | 42, 48, 2175, 2516, 3086, 3759, 3858, 5519 |
| SfuI | TTCGAA | 2 cut(s) | 153, 295 |
| SgrAI | CRCCGGYG | 1 cut(s) | 85 |
| SinI | GGWCC | 3 cut(s) | 2511, 3081, 4260 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 716, 740 |
| SmlI | CTYRAG | 8 cut(s) | 848, 1118, 1358, 1449, 3239, 4799, 4892, 5868 |
| SmoI | CTYRAG | 8 cut(s) | 848, 1118, 1358, 1449, 3239, 4799, 4892, 5868 |
| SnaBI | TACGTA | 2 cut(s) | 1508, 2377 |
| SpeI | ACTAGT | 2 cut(s) | 215, 691 |
| SsiI | CCGC | 7 cut(s) | 348, 1585, 2611, 3181, 3629, 5070, 5180 |
| SspI | AATATT | 4 cut(s) | 1549, 2410, 2980, 4498 |
| SstI | GAGCTC | 4 cut(s) | 510, 855, 1805, 4272 |
| StyD4I | CCNGG | 7 cut(s) | 494, 737, 785, 3732, 4231, 4947, 5898 |
| StyI | CCWWGG | 3 cut(s) | 3144, 5841, 6230 |
| TaiI | ACGT | 7 cut(s) | 78, 196, 716, 1510, 2009, 2379, 3978 |
| TatI | WGTACW | 8 cut(s) | 694, 1875, 2139, 2709, 2943, 3544, 4444, 4820 |
| TauI | GCSGC | 1 cut(s) | 5072 |
| TseFI | GTSAC | 6 cut(s) | 581, 3642, 3939, 4277, 4465, 4608 |
| Tsp45I | GTSAC | 6 cut(s) | 581, 3642, 3939, 4277, 4465, 4608 |
| TspGWI | ACGGA | 1 cut(s) | 2563 |
| Tth111I | GACNNNGTC | 1 cut(s) | 888 |
| VpaK11BI | GGWCC | 3 cut(s) | 2511, 3081, 4260 |
| XbaI | TCTAGA | 3 cut(s) | 895, 2413, 2983 |
| XceI | RCATGY | 6 cut(s) | 151, 701, 1779, 2022, 3400, 4717 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 4108, 5588 |
| XmiI | GTMKAC | 2 cut(s) | 1414, 5075 |
| XmnI | GAANNNNTTC | 7 cut(s) | 1299, 2358, 2601, 2620, 2928, 5119, 6034 |
| ZraI | GACGTC | 1 cut(s) | 76 |
| ZrmI | AGTACT | 1 cut(s) | 4446 |
| Zsp2I | ATGCAT | 5 cut(s) | 601, 2288, 2858, 4216, 6142 |