Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8348741.1

Orthogroup ID

OG0003663

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1034

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8348741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

gaagagagagagtcttttgttagagaagttggcactcttcgaattcagcttaggggtctcactgatcaacagccattggtgggtgaaaatggcggtgatttttgtaataatgaggctggaagtggagagaatggagaaaagactgcagtggtggacaagggtacgccgtggattgacttgataaaggagtgttctgggtttgttaacaaggcgttggagaaacagtctcagattgaggccagggtgagagagctcgatggaattgtgtatatgaaggatcaagaaatcgagggtctcaatgccaatgtgaaaggtttatatgagagtcaccatgagaaggatgcatattttgaagctctggcaaataggatgttggcttcccttagcggtgtagttggtcaacaagaactgctggatgattctattggtggaaaactagtacatgttgagaatggcacgtctatgttagttgagaatttcacccggatgctttctgaaattgaacatttcagacagtgtttgcctgagaccgggtttgatcatagttcgcaggaagtggggggcatttttgctgctgctcgtaatgagttacttgagctcagaagaaaggaagcagaatttgttgaaagactgagtcttctagaagattcaaataggaaattggttgaagaactggacaatcagagagcgatagctgaaaggctgaatgcagaacttggacaaacaaaaatggagctggagcaggagaagaataggtgtgctaatactagagagaagcttactatcgctgtgcagaaaggcaagggattggtacagcaaagagactcattgaagcagtccattgctgaaaaactgagtgagcttgagaagtgtcggactgaattgcaggagaagtcaagtgctcttgaagctgctgaattaagcaaggaggaattgattaggagtgaaaactcagttgcatcactgcaagaaacactttcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

36.62

Weight (kDa)

4.87

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24460 AT1G24460
fragaria_vesca	FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950
malus_domestica	MD13G1107800.v1.1 MD16G1107700.v1.1
prunus_persica	Prupe.1G238600_v2.0.a1
pyrus_communis	pycom01g03020 pycom13g09320 pycom16g09190
rosa_chinensis	RchiOBHm_Chr4g0431991
rosa_laevigata	RLG00000006869
rosa_multiflora	Rmu_co8237653.1_g000001 Rmu_co8348741.1_g000001 Rmu_sc0003919.1_g000022 Rmu_sc0004965.1_g000018
rosa_roxburghii	Rroxscaffold_5G00373540
rosa_rugosa	Rorug04G0254100
rosa_samantha	Rh4AG311400 Rh4BG318500 Rh4CG333800 Rh4DG313400
rosa_wichuraiana	Rw4G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 387
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	3 cut(s)	42, 475, 617
AfaI	GTAC	3 cut(s)	163, 441, 813
AfiI	CCNNNNNNNGG	3 cut(s)	80, 337, 530
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	7 cut(s)	353, 503, 626, 651, 668, 832, 908
AhlI	ACTAGT	1 cut(s)	436
AjiI	CACGTC	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	9 cut(s)	49, 253, 356, 598, 695, 736, 778, 862, 911
AluI	AGCT	9 cut(s)	49, 253, 356, 598, 695, 736, 778, 862, 911
Alw21I	GWGCWC	3 cut(s)	255, 600, 904
Alw26I	GTCTC	5 cut(s)	62, 231, 299, 521, 816
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	572, 575, 911
ApoI	RAATTY	3 cut(s)	42, 475, 617
AsuC2I	CCSGG	2 cut(s)	484, 532
AsuHPI	GGTGA	5 cut(s)	95, 107, 256, 320, 472
AsuII	TTCGAA	1 cut(s)	40
BanII	GRGCYC	2 cut(s)	255, 600
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	3 cut(s)	255, 600, 904
BbvI	GCAGC	3 cut(s)	559, 562, 898
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	241
BclI	TGATCA	2 cut(s)	64, 538
BcnI	CCSGG	2 cut(s)	484, 532
BcoDI	GTCTC	5 cut(s)	62, 231, 299, 521, 816
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	3 cut(s)	437, 641, 768
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	3 cut(s)	573, 576, 912
BlsI	GCNGC	3 cut(s)	574, 577, 913
Bme1390I	CCNGG	3 cut(s)	241, 484, 532
BmgBI	CACGTC	1 cut(s)	459
BmrFI	CCNGG	3 cut(s)	241, 484, 532
BmsI	GCATC	3 cut(s)	331, 477, 968
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	758
Bpu10I	CCTNAGC	2 cut(s)	50, 383
Bpu14I	TTCGAA	1 cut(s)	40
BpuEI	CTTGAG	2 cut(s)	614, 884
BpuMI	CCSGG	2 cut(s)	484, 532
BsaI	GGTCTC	3 cut(s)	62, 299, 521
BsaJI	CCNNGG	2 cut(s)	167, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 337, 530
Bse1I	ACTGG	1 cut(s)	678
Bse3DI	GCAATG	1 cut(s)	840
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	167, 240
BseGI	GGATG	4 cut(s)	346, 375, 421, 492
BseLI	CCNNNNNNNGG	3 cut(s)	80, 337, 530
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	6 cut(s)	242, 516, 613, 623, 845, 966
BseNI	ACTGG	1 cut(s)	678
BseXI	GCAGC	3 cut(s)	559, 562, 898
BsgI	GTGCAG	1 cut(s)	812
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	3 cut(s)	255, 600, 904
BsiSI	CCGG	2 cut(s)	484, 531
BslI	CCNNNNNNNGG	3 cut(s)	80, 337, 530
BsmAI	GTCTC	5 cut(s)	62, 231, 299, 521, 816
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	3 cut(s)	62, 299, 521
Bsp119I	TTCGAA	1 cut(s)	40
Bsp1286I	GDGCHC	3 cut(s)	255, 600, 904
Bsp143I	GATC	3 cut(s)	64, 277, 538
BspACI	CCGC	2 cut(s)	93, 387
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	6 cut(s)	241, 517, 612, 624, 846, 965
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	40
BspTNI	GGTCTC	3 cut(s)	62, 299, 521
BsrDI	GCAATG	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	678
BssECI	CCNNGG	2 cut(s)	167, 240
BssMI	GATC	3 cut(s)	64, 277, 538
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	225, 516
Bst6I	CTCTTC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	40
BstDEI	CTNAG	8 cut(s)	50, 228, 383, 525, 599, 632, 854, 952
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	4 cut(s)	346, 375, 421, 492
BstKTI	GATC	3 cut(s)	67, 280, 541
BstMAI	GTCTC	5 cut(s)	62, 231, 299, 521, 816
BstMBI	GATC	3 cut(s)	64, 277, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	908
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	239, 482, 530
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	559, 562, 898
BstV2I	GAAGAC	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	346, 375, 421, 492
BtsI	GCAGTG	2 cut(s)	153, 962
BtsIMutI	CAGTG	4 cut(s)	60, 153, 521, 962
Csp6I	GTAC	3 cut(s)	162, 440, 812
CviAII	CATG	2 cut(s)	332, 443
CviQI	GTAC	3 cut(s)	162, 440, 812
DdeI	CTNAG	8 cut(s)	50, 228, 383, 525, 599, 632, 854, 952
DpnI	GATC	3 cut(s)	66, 279, 540
DpnII	GATC	3 cut(s)	64, 277, 538
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Ecl136II	GAGCTC	2 cut(s)	253, 598
Eco24I	GRGCYC	2 cut(s)	255, 600
Eco31I	GGTCTC	3 cut(s)	62, 299, 521
Eco53kI	GAGCTC	2 cut(s)	253, 598
EcoICRI	GAGCTC	2 cut(s)	253, 598
EcoRI	GAATTC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	346
EcoT38I	GRGCYC	2 cut(s)	255, 600
FaeI	CATG	2 cut(s)	335, 446
FaiI	YATR	9 cut(s)	270, 272, 319, 321, 333, 346, 444, 464, 543
FalI	AAGNNNNNCTT	1 cut(s)	960
FatI	CATG	2 cut(s)	331, 442
FbaI	TGATCA	2 cut(s)	64, 538
Fnu4HI	GCNGC	3 cut(s)	573, 576, 912
FokI	GGATG	4 cut(s)	353, 382, 428, 499
FriOI	GRGCYC	2 cut(s)	255, 600
Fsp4HI	GCNGC	3 cut(s)	573, 576, 912
FspBI	CTAG	3 cut(s)	437, 641, 768
GluI	GCNGC	3 cut(s)	573, 576, 912
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	484, 531
Hin1II	CATG	2 cut(s)	335, 446
HincII	GTYRAC	2 cut(s)	205, 401
HindII	GTYRAC	2 cut(s)	205, 401
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	6 cut(s)	11, 325, 419, 634, 647, 824
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	484, 531
HphI	GGTGA	5 cut(s)	95, 107, 256, 320, 472
Hpy166II	GTNNAC	3 cut(s)	154, 205, 401
Hpy188I	TCNGA	6 cut(s)	231, 496, 512, 602, 684, 876
Hpy188III	TCNNGA	3 cut(s)	281, 641, 905
Hpy8I	GTNNAC	3 cut(s)	154, 205, 401
HpyAV	CCTTC	2 cut(s)	268, 331
HpyCH4III	ACNGT	2 cut(s)	225, 516
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	7 cut(s)	146, 344, 710, 793, 886, 959, 967
HpyF10VI	GCNNNNNNNGC	1 cut(s)	908
HpyF3I	CTNAG	8 cut(s)	50, 228, 383, 525, 599, 632, 854, 952
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	335, 446
Ksp22I	TGATCA	2 cut(s)	64, 538
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	64, 277, 538
LmnI	GCTCC	2 cut(s)	733, 739
Lsp1109I	GCAGC	3 cut(s)	559, 562, 898
LweI	GCATC	3 cut(s)	331, 477, 968
MaeI	CTAG	3 cut(s)	437, 641, 768
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	2 cut(s)	326, 588
MalI	GATC	3 cut(s)	66, 279, 540
MboI	GATC	3 cut(s)	64, 277, 538
MboII	GAAGA	7 cut(s)	14, 29, 615, 629, 656, 680, 760
MhlI	GDGCHC	3 cut(s)	255, 600, 904
MluCI	AATT	9 cut(s)	42, 261, 475, 498, 617, 659, 881, 917, 932
MlyI	GAGTC	4 cut(s)	20, 334, 643, 818
MmeI	TCCRAC	2 cut(s)	195, 854
MnlI	CCTC	4 cut(s)	106, 229, 283, 922
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	2 cut(s)	204, 920
MslI	CAYNNNNRTG	2 cut(s)	461, 485
MspI	CCGG	2 cut(s)	484, 531
MspR9I	CCNGG	3 cut(s)	241, 484, 532
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	908
NciI	CCSGG	2 cut(s)	484, 532
NdeII	GATC	3 cut(s)	64, 277, 538
NlaIII	CATG	2 cut(s)	335, 446
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	346
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	40
PciI	ACATGT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	419, 647
PflFI	GACNNNGTC	1 cut(s)	633
PkrI	GCNGC	3 cut(s)	574, 577, 913
PleI	GAGTC	4 cut(s)	19, 333, 642, 818
PpsI	GAGTC	4 cut(s)	19, 333, 642, 818
PscI	ACATGT	1 cut(s)	442
Psp124BI	GAGCTC	2 cut(s)	255, 600
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	633
RsaI	GTAC	3 cut(s)	163, 441, 813
RsaNI	GTAC	3 cut(s)	162, 440, 812
RseI	CAYNNNNRTG	2 cut(s)	461, 485
SacI	GAGCTC	2 cut(s)	255, 600
SaqAI	TTAA	2 cut(s)	204, 920
SatI	GCNGC	3 cut(s)	573, 576, 912
Sau3AI	GATC	3 cut(s)	64, 277, 538
SchI	GAGTC	4 cut(s)	20, 334, 643, 818
ScrFI	CCNGG	3 cut(s)	241, 484, 532
SduI	GDGCHC	3 cut(s)	255, 600, 904
SfaNI	GCATC	3 cut(s)	331, 477, 968
SfcI	CTRYAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	461, 485
SmlI	CTYRAG	2 cut(s)	593, 863
SmoI	CTYRAG	2 cut(s)	593, 863
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	9 cut(s)	42, 261, 475, 498, 617, 659, 881, 917, 932
SsiI	CCGC	2 cut(s)	93, 387
SspMI	CTAG	3 cut(s)	437, 641, 768
SstI	GAGCTC	2 cut(s)	255, 600
StyD4I	CCNGG	3 cut(s)	239, 482, 530
TaaI	ACNGT	2 cut(s)	225, 516
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	3 cut(s)	40, 255, 288
TasI	AATT	9 cut(s)	42, 261, 475, 498, 617, 659, 881, 917, 932
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	2 cut(s)	419, 647
Tru1I	TTAA	2 cut(s)	204, 920
Tru9I	TTAA	2 cut(s)	204, 920
TscAI	CASTG	4 cut(s)	67, 153, 521, 969
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	572, 575, 911
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	4 cut(s)	67, 153, 521, 969
Tth111I	GACNNNGTC	1 cut(s)	633
XapI	RAATTY	3 cut(s)	42, 475, 617
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	3 cut(s)	437, 641, 768
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.