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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24460 AT1G24460 |
| fragaria_vesca | FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 |
| malus_domestica | MD13G1107800.v1.1 MD16G1107700.v1.1 |
| prunus_persica | Prupe.1G238600_v2.0.a1 |
| pyrus_communis | pycom01g03020 pycom13g09320 pycom16g09190 |
| rosa_chinensis | RchiOBHm_Chr4g0431991 |
| rosa_laevigata | RLG00000006869 |
| rosa_multiflora | Rmu_co8237653.1_g000001 Rmu_co8348741.1_g000001 Rmu_sc0003919.1_g000022 Rmu_sc0004965.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00373540 |
| rosa_rugosa | Rorug04G0254100 |
| rosa_samantha | Rh4AG311400 Rh4BG318500 Rh4CG333800 Rh4DG313400 |
| rosa_wichuraiana | Rw4G027070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 3958, 4342 |
| AatII | GACGTC | 1 cut(s) | 78 |
| Acc16I | TGCGCA | 1 cut(s) | 6044 |
| Acc36I | ACCTGC | 1 cut(s) | 5752 |
| AccBSI | CCGCTC | 3 cut(s) | 2611, 3202, 4899 |
| AccI | GTMKAC | 2 cut(s) | 1414, 5096 |
| AccII | CGCG | 4 cut(s) | 128, 1467, 4617, 5093 |
| AccIII | TCCGGA | 1 cut(s) | 31 |
| AclI | AACGTT | 2 cut(s) | 193, 3996 |
| AclWI | GGATC | 9 cut(s) | 540, 3096, 3109, 3390, 4035, 4404, 5175, 6001, 6083 |
| AcoI | YGGCCR | 3 cut(s) | 22, 5088, 5829 |
| AcuI | CTGAAG | 9 cut(s) | 188, 1238, 1314, 2160, 2751, 3696, 4218, 5528, 6138 |
| AcyI | GRCGYC | 2 cut(s) | 75, 6270 |
| AdeI | CACNNNGTG | 1 cut(s) | 4706 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 31, 335, 592, 785, 6185 |
| AflIII | ACRYGT | 5 cut(s) | 147, 697, 1775, 2018, 3417 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 130, 5719 |
| AhlI | ACTAGT | 2 cut(s) | 215, 691 |
| AjnI | CCWGG | 4 cut(s) | 494, 3753, 4252, 5922 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3029, 3061 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 134, 166 |
| Alw21I | GWGCWC | 7 cut(s) | 510, 855, 1159, 1805, 4030, 4293, 4734 |
| AlwI | GGATC | 9 cut(s) | 540, 3096, 3109, 3390, 4035, 4404, 5175, 6001, 6083 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2264, 2855 |
| Aor13HI | TCCGGA | 1 cut(s) | 31 |
| AoxI | GGCC | 6 cut(s) | 22, 492, 3990, 5088, 5829, 6139 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 1299, 2358, 2601, 2620, 2949, 5140, 5541, 6058 |
| AspLEI | GCGC | 1 cut(s) | 6045 |
| AspS9I | GGNCC | 2 cut(s) | 2511, 4281 |
| AsuC2I | CCSGG | 2 cut(s) | 739, 787 |
| AsuII | TTCGAA | 3 cut(s) | 56, 153, 295 |
| AsuNHI | GCTAGC | 1 cut(s) | 3758 |
| AvaII | GGWCC | 2 cut(s) | 2511, 4281 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1272, 1305, 3502, 3535 |
| BamHI | GGATCC | 1 cut(s) | 3101 |
| BanII | GRGCYC | 4 cut(s) | 510, 855, 1805, 4293 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1311, 1343, 1446, 1478, 3903, 3935 |
| BbsI | GAAGAC | 5 cut(s) | 884, 2166, 2757, 4595, 5352 |
| Bbv12I | GWGCWC | 7 cut(s) | 510, 855, 1159, 1805, 4030, 4293, 4734 |
| BbvCI | CCTCAGC | 2 cut(s) | 3534, 4545 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3761, 3795, 5705, 5739 |
| BciT130I | CCWGG | 4 cut(s) | 496, 3755, 4254, 5924 |
| BciVI | GTATCC | 2 cut(s) | 205, 3503 |
| BclI | TGATCA | 3 cut(s) | 319, 793, 4297 |
| BcnI | CCSGG | 2 cut(s) | 739, 787 |
| BcuI | ACTAGT | 2 cut(s) | 215, 691 |
| BfmI | CTRYAG | 6 cut(s) | 42, 48, 399, 2516, 3780, 3879 |
| BfuAI | ACCTGC | 1 cut(s) | 5752 |
| BfuI | GTATCC | 2 cut(s) | 205, 3503 |
| BlpI | GCTNAGC | 3 cut(s) | 4056, 4446, 5907 |
| BmcAI | AGTACT | 1 cut(s) | 4467 |
| Bme1390I | CCNGG | 6 cut(s) | 496, 739, 787, 3755, 4254, 5924 |
| Bme18I | GGWCC | 2 cut(s) | 2511, 4281 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 130, 5719 |
| BmgT120I | GGNCC | 2 cut(s) | 2511, 4281 |
| BmiI | GGNNCC | 4 cut(s) | 2512, 2513, 3103, 6061 |
| BmrFI | CCNGG | 6 cut(s) | 496, 739, 787, 3755, 4254, 5924 |
| BmtI | GCTAGC | 1 cut(s) | 3762 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5743 |
| BpiI | GAAGAC | 5 cut(s) | 884, 2166, 2757, 4595, 5352 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1721, 1753, 1964, 1996 |
| BpmI | CTGGAG | 4 cut(s) | 1013, 1731, 3425, 4490 |
| Bpu10I | CCTNAGC | 6 cut(s) | 305, 638, 3254, 3534, 4545, 5808 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 4056, 4446, 5907 |
| Bpu14I | TTCGAA | 3 cut(s) | 56, 153, 295 |
| BpuEI | CTTGAG | 8 cut(s) | 869, 1139, 1343, 1434, 3281, 4805, 4934, 5877 |
| BpuMI | CCSGG | 2 cut(s) | 739, 787 |
| Bsa29I | ATCGAT | 2 cut(s) | 5484, 6087 |
| BsaAI | YACGTR | 3 cut(s) | 1508, 2377, 2968 |
| BsaBI | GATNNNNATC | 3 cut(s) | 4395, 5405, 6087 |
| BsaHI | GRCGYC | 2 cut(s) | 75, 6270 |
| BsaI | GGTCTC | 5 cut(s) | 317, 554, 776, 4413, 4958 |
| BsaJI | CCNNGG | 9 cut(s) | 99, 422, 495, 2574, 3165, 3753, 4968, 5865, 6254 |
| BsaWI | WCCGGW | 1 cut(s) | 31 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 134, 164, 464, 494, 4878, 4908 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 31, 335, 592, 785, 6185 |
| Bse118I | RCCGGY | 1 cut(s) | 85 |
| Bse3DI | GCAATG | 3 cut(s) | 1095, 1755, 6273 |
| Bse8I | GATNNNNATC | 3 cut(s) | 4395, 5405, 6087 |
| BseAI | TCCGGA | 1 cut(s) | 31 |
| BseBI | CCWGG | 4 cut(s) | 496, 3755, 4254, 5924 |
| BseCI | ATCGAT | 2 cut(s) | 5484, 6087 |
| BseDI | CCNNGG | 9 cut(s) | 99, 422, 495, 2574, 3165, 3753, 4968, 5865, 6254 |
| BseJI | GATNNNNATC | 3 cut(s) | 4395, 5405, 6087 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 31, 335, 592, 785, 6185 |
| BseMI | GCAATG | 3 cut(s) | 1095, 1755, 6273 |
| BseRI | GAGGAG | 4 cut(s) | 2435, 3026, 4217, 5606 |
| BsgI | GTGCAG | 2 cut(s) | 1067, 4578 |
| Bsh1236I | CGCG | 4 cut(s) | 128, 1467, 4617, 5093 |
| BshFI | GGCC | 6 cut(s) | 24, 494, 3992, 5090, 5831, 6141 |
| BshVI | ATCGAT | 2 cut(s) | 5484, 6087 |
| BsiHKAI | GWGCWC | 7 cut(s) | 510, 855, 1159, 1805, 4030, 4293, 4734 |
| BsiSI | CCGG | 5 cut(s) | 21, 32, 86, 739, 786 |
| BslFI | GGGAC | 3 cut(s) | 2497, 3314, 5751 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 31, 335, 592, 785, 6185 |
| BsmBI | CGTCTC | 1 cut(s) | 5706 |
| BsmFI | GGGAC | 3 cut(s) | 2497, 3314, 5751 |
| BsmI | GAATGC | 7 cut(s) | 64, 967, 1924, 2554, 3145, 3299, 3336 |
| BsnI | GGCC | 6 cut(s) | 24, 494, 3992, 5090, 5831, 6141 |
| Bso31I | GGTCTC | 5 cut(s) | 317, 554, 776, 4413, 4958 |
| Bsp119I | TTCGAA | 3 cut(s) | 56, 153, 295 |
| Bsp1286I | GDGCHC | 7 cut(s) | 510, 855, 1159, 1805, 4030, 4293, 4734 |
| Bsp13I | TCCGGA | 1 cut(s) | 31 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 4056, 4446, 5907 |
| Bsp19I | CCATGG | 1 cut(s) | 3165 |
| Bsp68I | TCGCGA | 1 cut(s) | 1467 |
| BspANI | GGCC | 6 cut(s) | 24, 494, 3992, 5090, 5831, 6141 |
| BspDI | ATCGAT | 2 cut(s) | 5484, 6087 |
| BspEI | TCCGGA | 1 cut(s) | 31 |
| BspFNI | CGCG | 4 cut(s) | 128, 1467, 4617, 5093 |
| BspHI | TCATGA | 1 cut(s) | 3526 |
| BspLI | GGNNCC | 4 cut(s) | 2512, 2513, 3103, 6061 |
| BspMAI | CTGCAG | 5 cut(s) | 46, 52, 403, 3784, 3883 |
| BspMI | ACCTGC | 1 cut(s) | 5752 |
| BspOI | GCTAGC | 1 cut(s) | 3762 |
| BspPI | GGATC | 9 cut(s) | 540, 3096, 3109, 3390, 4035, 4404, 5175, 6001, 6083 |
| BspQI | GCTCTTC | 3 cut(s) | 5, 1290, 5532 |
| BspT104I | TTCGAA | 3 cut(s) | 56, 153, 295 |
| BspTNI | GGTCTC | 5 cut(s) | 317, 554, 776, 4413, 4958 |
| BsrBI | CCGCTC | 3 cut(s) | 2611, 3202, 4899 |
| BsrDI | GCAATG | 3 cut(s) | 1095, 1755, 6273 |
| BsrFI | RCCGGY | 1 cut(s) | 85 |
| BssAI | RCCGGY | 1 cut(s) | 85 |
| BssECI | CCNNGG | 9 cut(s) | 99, 422, 495, 2574, 3165, 3753, 4968, 5865, 6254 |
| BssNI | GRCGYC | 2 cut(s) | 75, 6270 |
| BssT1I | CCWWGG | 3 cut(s) | 3165, 5865, 6254 |
| Bst2UI | CCWGG | 4 cut(s) | 496, 3755, 4254, 5924 |
| BstACI | GRCGYC | 2 cut(s) | 75, 6270 |
| BstBAI | YACGTR | 3 cut(s) | 1508, 2377, 2968 |
| BstBI | TTCGAA | 3 cut(s) | 56, 153, 295 |
| BstDSI | CCRYGG | 4 cut(s) | 422, 2574, 3165, 4968 |
| BstFNI | CGCG | 4 cut(s) | 128, 1467, 4617, 5093 |
| BstHHI | GCGC | 1 cut(s) | 6045 |
| BstNI | CCWGG | 4 cut(s) | 496, 3755, 4254, 5924 |
| BstNSI | RCATGY | 6 cut(s) | 151, 701, 1779, 2022, 3421, 4738 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5743 |
| BstSCI | CCNGG | 6 cut(s) | 494, 737, 785, 3753, 4252, 5922 |
| BstSFI | CTRYAG | 6 cut(s) | 42, 48, 399, 2516, 3780, 3879 |
| BstSNI | TACGTA | 3 cut(s) | 1508, 2377, 2968 |
| BstUI | CGCG | 4 cut(s) | 128, 1467, 4617, 5093 |
| BstV2I | GAAGAC | 5 cut(s) | 884, 2166, 2757, 4595, 5352 |
| BstX2I | RGATCY | 4 cut(s) | 3101, 4040, 4396, 5167 |
| BstYI | RGATCY | 4 cut(s) | 3101, 4040, 4396, 5167 |
| Bsu15I | ATCGAT | 2 cut(s) | 5484, 6087 |
| BsuI | GTATCC | 2 cut(s) | 205, 3503 |
| BsuRI | GGCC | 6 cut(s) | 24, 494, 3992, 5090, 5831, 6141 |
| BsuTUI | ATCGAT | 2 cut(s) | 5484, 6087 |
| BtgI | CCRYGG | 4 cut(s) | 422, 2574, 3165, 4968 |
| BtsI | GCAGTG | 9 cut(s) | 408, 1217, 2053, 2262, 2317, 2644, 2853, 2908, 3876 |
| BtuMI | TCGCGA | 1 cut(s) | 1467 |
| BveI | ACCTGC | 1 cut(s) | 5752 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2264, 2855 |
| CciI | TCATGA | 1 cut(s) | 3526 |
| CfoI | GCGC | 1 cut(s) | 6045 |
| Cfr10I | RCCGGY | 1 cut(s) | 85 |
| Cfr13I | GGNCC | 2 cut(s) | 2511, 4281 |
| ClaI | ATCGAT | 2 cut(s) | 5484, 6087 |
| CseI | GACGC | 8 cut(s) | 134, 1889, 2153, 2744, 2751, 5082, 5248, 6259 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 1750, 1785, 2257, 2292, 2848, 2883, 5067, 5102 |
| DraI | TTTAAA | 1 cut(s) | 4747 |
| DraIII | CACNNNGTG | 1 cut(s) | 4706 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 3958, 4342 |
| DriI | GACNNNNNGTC | 2 cut(s) | 130, 5719 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 3958, 4342 |
| EaeI | YGGCCR | 3 cut(s) | 22, 5088, 5829 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 130, 5719 |
| EciI | GGCGGA | 2 cut(s) | 3665, 5216 |
| Ecl136II | GAGCTC | 4 cut(s) | 508, 853, 1803, 4291 |
| Eco105I | TACGTA | 3 cut(s) | 1508, 2377, 2968 |
| Eco130I | CCWWGG | 3 cut(s) | 3165, 5865, 6254 |
| Eco24I | GRGCYC | 4 cut(s) | 510, 855, 1805, 4293 |
| Eco31I | GGTCTC | 5 cut(s) | 317, 554, 776, 4413, 4958 |
| Eco32I | GATATC | 4 cut(s) | 172, 5973, 6015, 6085 |
| Eco47I | GGWCC | 2 cut(s) | 2511, 4281 |
| Eco53kI | GAGCTC | 4 cut(s) | 508, 853, 1803, 4291 |
| Eco57I | CTGAAG | 9 cut(s) | 188, 1238, 1314, 2160, 2751, 3696, 4218, 5528, 6138 |
| EcoICRI | GAGCTC | 4 cut(s) | 508, 853, 1803, 4291 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2511, 4281 |
| EcoRI | GAATTC | 2 cut(s) | 297, 1376 |
| EcoRII | CCWGG | 4 cut(s) | 494, 3753, 4252, 5922 |
| EcoRV | GATATC | 4 cut(s) | 172, 5973, 6015, 6085 |
| EcoT14I | CCWWGG | 3 cut(s) | 3165, 5865, 6254 |
| EcoT22I | ATGCAT | 3 cut(s) | 601, 4237, 6166 |
| EcoT38I | GRGCYC | 4 cut(s) | 510, 855, 1805, 4293 |
| ErhI | CCWWGG | 3 cut(s) | 3165, 5865, 6254 |
| Esp3I | CGTCTC | 1 cut(s) | 5706 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1215, 1247, 3960, 3992, 5456, 5488, 5526, 5558 |
| FaqI | GGGAC | 3 cut(s) | 2497, 3314, 5751 |
| FauI | CCCGC | 4 cut(s) | 121, 1578, 2604, 3195 |
| FauNDI | CATATG | 1 cut(s) | 4483 |
| FbaI | TGATCA | 3 cut(s) | 319, 793, 4297 |
| FblI | GTMKAC | 2 cut(s) | 1414, 5096 |
| FriOI | GRGCYC | 4 cut(s) | 510, 855, 1805, 4293 |
| FspAI | RTGCGCAY | 1 cut(s) | 6044 |
| FspI | TGCGCA | 1 cut(s) | 6044 |
| GlaI | GCGC | 1 cut(s) | 6044 |
| GsuI | CTGGAG | 4 cut(s) | 1013, 1731, 3425, 4490 |
| HaeIII | GGCC | 6 cut(s) | 24, 494, 3992, 5090, 5831, 6141 |
| HapII | CCGG | 5 cut(s) | 21, 32, 86, 739, 786 |
| HgaI | GACGC | 8 cut(s) | 134, 1889, 2153, 2744, 2751, 5082, 5248, 6259 |
| HhaI | GCGC | 1 cut(s) | 6045 |
| Hin1I | GRCGYC | 2 cut(s) | 75, 6270 |
| Hin6I | GCGC | 1 cut(s) | 6043 |
| HinP1I | GCGC | 1 cut(s) | 6043 |
| HincII | GTYRAC | 6 cut(s) | 460, 656, 1560, 2067, 2658, 5550 |
| HindII | GTYRAC | 6 cut(s) | 460, 656, 1560, 2067, 2658, 5550 |
| HindIII | AAGCTT | 3 cut(s) | 1031, 4100, 5052 |
| HpaI | GTTAAC | 3 cut(s) | 460, 1560, 2658 |
| HpaII | CCGG | 5 cut(s) | 21, 32, 86, 739, 786 |
| Hpy99I | CGWCG | 3 cut(s) | 77, 80, 170 |
| HpyCH4IV | ACGT | 7 cut(s) | 75, 193, 1507, 2006, 2376, 2967, 3996 |
| HpySE526I | ACGT | 7 cut(s) | 75, 193, 1507, 2006, 2376, 2967, 3996 |
| Hsp92I | GRCGYC | 2 cut(s) | 75, 6270 |
| HspAI | GCGC | 1 cut(s) | 6043 |
| KflI | GGGWCCC | 1 cut(s) | 2511 |
| Kpn2I | TCCGGA | 1 cut(s) | 31 |
| Ksp22I | TGATCA | 3 cut(s) | 319, 793, 4297 |
| KspAI | GTTAAC | 3 cut(s) | 460, 1560, 2658 |
| LguI | GCTCTTC | 3 cut(s) | 5, 1290, 5532 |
| LmnI | GCTCC | 7 cut(s) | 988, 994, 1897, 2344, 2935, 4949, 5931 |
| MaeII | ACGT | 7 cut(s) | 75, 193, 1507, 2006, 2376, 2967, 3996 |
| MbiI | CCGCTC | 3 cut(s) | 2611, 3202, 4899 |
| MfeI | CAATTG | 3 cut(s) | 3450, 5100, 6078 |
| MflI | RGATCY | 4 cut(s) | 3101, 4040, 4396, 5167 |
| MhlI | GDGCHC | 7 cut(s) | 510, 855, 1159, 1805, 4030, 4293, 4734 |
| Mph1103I | ATGCAT | 3 cut(s) | 601, 4237, 6166 |
| MroI | TCCGGA | 1 cut(s) | 31 |
| MroXI | GAANNNNTTC | 8 cut(s) | 1299, 2358, 2601, 2620, 2949, 5140, 5541, 6058 |
| MslI | CAYNNNNRTG | 2 cut(s) | 716, 740 |
| MspA1I | CMGCKG | 6 cut(s) | 47, 208, 1577, 2084, 2675, 3353 |
| MspI | CCGG | 5 cut(s) | 21, 32, 86, 739, 786 |
| MspR9I | CCNGG | 6 cut(s) | 496, 739, 787, 3755, 4254, 5924 |
| MunI | CAATTG | 3 cut(s) | 3450, 5100, 6078 |
| Mva1269I | GAATGC | 7 cut(s) | 64, 967, 1924, 2554, 3145, 3299, 3336 |
| MvaI | CCWGG | 4 cut(s) | 496, 3755, 4254, 5924 |
| MvnI | CGCG | 4 cut(s) | 128, 1467, 4617, 5093 |
| NciI | CCSGG | 2 cut(s) | 739, 787 |
| NcoI | CCATGG | 1 cut(s) | 3165 |
| NdeI | CATATG | 1 cut(s) | 4483 |
| NheI | GCTAGC | 1 cut(s) | 3758 |
| NlaIV | GGNNCC | 4 cut(s) | 2512, 2513, 3103, 6061 |
| NmeAIII | GCCGAG | 1 cut(s) | 5857 |
| NmuCI | GTSAC | 5 cut(s) | 581, 3663, 3960, 4486, 4629 |
| NruI | TCGCGA | 1 cut(s) | 1467 |
| NsbI | TGCGCA | 1 cut(s) | 6044 |
| NsiI | ATGCAT | 3 cut(s) | 601, 4237, 6166 |
| NspI | RCATGY | 6 cut(s) | 151, 701, 1779, 2022, 3421, 4738 |
| NspV | TTCGAA | 3 cut(s) | 56, 153, 295 |
| PagI | TCATGA | 1 cut(s) | 3526 |
| PciI | ACATGT | 5 cut(s) | 147, 697, 1775, 2018, 3417 |
| PciSI | GCTCTTC | 3 cut(s) | 5, 1290, 5532 |
| PctI | GAATGC | 7 cut(s) | 64, 967, 1924, 2554, 3145, 3299, 3336 |
| PdmI | GAANNNNTTC | 8 cut(s) | 1299, 2358, 2601, 2620, 2949, 5140, 5541, 6058 |
| PflFI | GACNNNGTC | 1 cut(s) | 888 |
| PfoI | TCCNGGA | 1 cut(s) | 5922 |
| Ppu21I | YACGTR | 3 cut(s) | 1508, 2377, 2968 |
| PpuMI | RGGWCCY | 2 cut(s) | 2511, 4281 |
| PscI | ACATGT | 5 cut(s) | 147, 697, 1775, 2018, 3417 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5743 |
| Psp124BI | GAGCTC | 4 cut(s) | 510, 855, 1805, 4293 |
| Psp1406I | AACGTT | 2 cut(s) | 193, 3996 |
| Psp5II | RGGWCCY | 2 cut(s) | 2511, 4281 |
| Psp6I | CCWGG | 4 cut(s) | 494, 3753, 4252, 5922 |
| PspGI | CCWGG | 4 cut(s) | 494, 3753, 4252, 5922 |
| PspN4I | GGNNCC | 4 cut(s) | 2512, 2513, 3103, 6061 |
| PspPI | GGNCC | 2 cut(s) | 2511, 4281 |
| PspPPI | RGGWCCY | 2 cut(s) | 2511, 4281 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3384, 3416 |
| PstI | CTGCAG | 5 cut(s) | 46, 52, 403, 3784, 3883 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2264, 2855 |
| PsuI | RGATCY | 4 cut(s) | 3101, 4040, 4396, 5167 |
| PsyI | GACNNNGTC | 1 cut(s) | 888 |
| PvuII | CAGCTG | 6 cut(s) | 47, 208, 1577, 2084, 2675, 3353 |
| RruI | TCGCGA | 1 cut(s) | 1467 |
| RseI | CAYNNNNRTG | 2 cut(s) | 716, 740 |
| SacI | GAGCTC | 4 cut(s) | 510, 855, 1805, 4293 |
| SapI | GCTCTTC | 3 cut(s) | 5, 1290, 5532 |
| Sau96I | GGNCC | 2 cut(s) | 2511, 4281 |
| ScaI | AGTACT | 1 cut(s) | 4467 |
| ScrFI | CCNGG | 6 cut(s) | 496, 739, 787, 3755, 4254, 5924 |
| SduI | GDGCHC | 7 cut(s) | 510, 855, 1159, 1805, 4030, 4293, 4734 |
| SfcI | CTRYAG | 6 cut(s) | 42, 48, 399, 2516, 3780, 3879 |
| SfuI | TTCGAA | 3 cut(s) | 56, 153, 295 |
| SgrAI | CRCCGGYG | 1 cut(s) | 85 |
| SinI | GGWCC | 2 cut(s) | 2511, 4281 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 716, 740 |
| SmlI | CTYRAG | 8 cut(s) | 848, 1118, 1358, 1449, 3260, 4820, 4913, 5892 |
| SmoI | CTYRAG | 8 cut(s) | 848, 1118, 1358, 1449, 3260, 4820, 4913, 5892 |
| SnaBI | TACGTA | 3 cut(s) | 1508, 2377, 2968 |
| SpeI | ACTAGT | 2 cut(s) | 215, 691 |
| SspI | AATATT | 5 cut(s) | 1549, 2410, 3001, 4519, 5491 |
| SstI | GAGCTC | 4 cut(s) | 510, 855, 1805, 4293 |
| StyD4I | CCNGG | 6 cut(s) | 494, 737, 785, 3753, 4252, 5922 |
| StyI | CCWWGG | 3 cut(s) | 3165, 5865, 6254 |
| TaiI | ACGT | 7 cut(s) | 78, 196, 1510, 2009, 2379, 2970, 3999 |
| TatI | WGTACW | 7 cut(s) | 694, 1875, 2139, 2730, 3565, 4465, 4841 |
| TauI | GCSGC | 1 cut(s) | 5093 |
| TseFI | GTSAC | 5 cut(s) | 581, 3663, 3960, 4486, 4629 |
| Tsp45I | GTSAC | 5 cut(s) | 581, 3663, 3960, 4486, 4629 |
| TspGWI | ACGGA | 3 cut(s) | 1325, 2563, 4985 |
| Tth111I | GACNNNGTC | 1 cut(s) | 888 |
| VpaK11BI | GGWCC | 2 cut(s) | 2511, 4281 |
| XbaI | TCTAGA | 3 cut(s) | 895, 2413, 3004 |
| XceI | RCATGY | 6 cut(s) | 151, 701, 1779, 2022, 3421, 4738 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 4129, 5612 |
| XmiI | GTMKAC | 2 cut(s) | 1414, 5096 |
| XmnI | GAANNNNTTC | 8 cut(s) | 1299, 2358, 2601, 2620, 2949, 5140, 5541, 6058 |
| ZraI | GACGTC | 1 cut(s) | 76 |
| ZrmI | AGTACT | 1 cut(s) | 4467 |
| Zsp2I | ATGCAT | 3 cut(s) | 601, 4237, 6166 |